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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1532 fasta sequence
[CGGTTAATCGATCAGGTGAAGACTCGATGGATATGTGCGTAACGAGCAACTCGTACCTGGACATTTCAACCATACTACCGTCGTCTTTAAGCGACGATAACATTGAAGAGATCCTTACGCACATCTTAACGCCGACAATACGCAAACAAACGTACGTCTTCGGGATGGTCGTTCTGACGGTGAACTTCATGGACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGGTGCGGTTTGAAAGTGGTAGCTATCAAAAGCTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCAAGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTTTCTGCCACAAGCATGGTCTGCCGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTTTTTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCTATTTTAACCTTCCTGCAGGCGGTGCTGAGAACTGACGACTCAAAAGTATTCAACAACTACCATGATCTGGTACTGAAGTTACTAAGTACGGAAAGCTCCACCACGGAAGAAGCCAAGGCAAATGCGGAAGATATTACGAAGCAGCTGGGTGAACTGACGCCTGTTGTGAAGAACATTGCTGGCAACTTTAAGAAAGCTGGTGTAACTCCAGTAGAGTAAAGAAGGAGAGAGGTCGTTCGATCGGTCGTTAGGTCCTTAGTGCATTAAATTGGGTTGGATCTTACTTGTGTGCTGGAGGTATGGTTAATATTCTTTATTTTTTCGCGTCAATAAAACCCGAGCTTGTTAATT]
[+] EMBL CNS08XNL [CGGTTAATCGATCAGGTGAAGACTCGATGGATATGTGCGTAACGAGCAACTCGTACCTGGACATTTCAACCATACTACCGTCGTCTTTAAGCGACGATAACATTGAAGAGATCCTTACGCACATCTTAACGCCGACAATACGCAAACAAACGTACGTCTTCGGGATGGTCGTTCTGACGGTGAACTTCATGGACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGGTGCGGTTTGAAAGTGGTAGCTATCAAAAGCTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCAAGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAA ]
[-] EMBL CNS08XNM [ CTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTTTCTGCCACAAGCATGGTCTGCCGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTTTTTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCTATTTTAACCTTCCTGCAGGCGGTGCTGAGAACTGACGACTCAAAAGTATTCAACAACTACCATGATCTGGTACTGAAGTTACTAAGTACGGAAAGCTCCACCACGGAAGAAGCCAAGGCAAATGCGGAAGATATTACGAAGCAGCTGGGTGAACTGACGCCTGTTGTGAAGAACATTGCTGGCAACTTTAAGAAAGCTGGTGTAACTCCAGTAGAGTAAAGAAGGAGAGAGGTCGTTCGATCGGTCGTTAGGTCCTTAGTGCATTAAATTGGGTTGGATCTTACTTGTGTGCTGGAGGTATGGTTAATATTCTTTATTTTTTCGCGTCAATAAAACCCGAGCTTGTTAATT]
consensusID : consensus_5217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1049 fasta sequence
[GACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGCGTGCGGTTGAAAGTGTAGCTATCAAAAGTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCGAGACGAAGACAAAATCGACGAAAAAGCATGCCCGAGGAACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTTGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTCTCTGCCACAAGCATGGTCTGCTGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTATCTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCT]
[+] EMBL BX608438 [GACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGCGTGCGGTTGAAAGTGTAGCTATCAAAAGTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCGAGACGAAGACAAAATCGACGAAAAAGCATGCCCGAGGAACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTTGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTA ]
[+] EMBL BX608754 [ AACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTTAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTCTCTGCCACAAGCATGGTCTGCTGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTATCTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5217#0 CGGTTAATCGATCAGGTGAAGACTCGATGGATATGTGCGTAACGAGCAACTCGTACCTGG 60
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 ACATTTCAACCATACTACCGTCGTCTTTAAGCGACGATAACATTGAAGAGATCCTTACGC 120
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 ACATCTTAACGCCGACAATACGCAAACAAACGTACGTCTTCGGGATGGTCGTTCTGACGG 180
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 TGAACTTCATGGACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAG- 239
consensus_5217#1 -----------GACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGC 49
************************************************
consensus_5217#0 GTGCGGTTTGAAAGTGGTAGCTATCAAAAGCTATATAGCAGAGAAGTCAATAAAGCATCA 299
consensus_5217#1 GTGCGGTT-GAAAGTG-TAGCTATCAAAAG-TATATAGCAGAGAAGTCAATAAAGCATCA 106
******** ******* ************* *****************************
consensus_5217#0 GGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAA 359
consensus_5217#1 GGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAA 166
************************************************************
consensus_5217#0 GAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCAAGACGA---------- 409
consensus_5217#1 GAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCGAGACGAAGACAAAATC 226
******************************************* ******
consensus_5217#0 ---------------------------------------------------TGGCGGAGA 418
consensus_5217#1 GACGAAAAAGCATGCCCGAGGAACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGA 286
*********
consensus_5217#0 GATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCAC 478
consensus_5217#1 GATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCAC 346
************************************************************
consensus_5217#0 AGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTT 538
consensus_5217#1 AGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTT 406
************************************************************
consensus_5217#0 GGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGC 598
consensus_5217#1 GGCAAAGGACGTTGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGC 466
************ ***********************************************
consensus_5217#0 GCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGC 658
consensus_5217#1 GCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGC 526
************************************************************
consensus_5217#0 CAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATT 718
consensus_5217#1 CAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATT 586
************************************************************
consensus_5217#0 GAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGG 778
consensus_5217#1 GAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGG 646
************************************************************
consensus_5217#0 CACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAA 838
consensus_5217#1 CACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAA 706
************************************************************
consensus_5217#0 CTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGA 898
consensus_5217#1 CTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGA 766
************************************************************
consensus_5217#0 ATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGA 958
consensus_5217#1 ATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGA 826
************************************************************
consensus_5217#0 TTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGA 1018
consensus_5217#1 TTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGA 886
************************************************************
consensus_5217#0 CAAAAAAAAGGATAGAAACCTAATTTTCTGCCACAAGCATGGTCTGCCGGAGCAGCTGAC 1078
consensus_5217#1 CAAAAAAAAGGATAGAAACCTAATTCTCTGCCACAAGCATGGTCTGCTGGAGCAGCTGAC 946
************************* ********************* ************
consensus_5217#0 CAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTTTTTTTACTATCTC 1138
consensus_5217#1 CAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTATCTTTACTATCTC 1006
********************************************** * ***********
consensus_5217#0 AACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCTATTTTAACCTTCCTGCA 1198
consensus_5217#1 AACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCT----------------- 1049
*******************************************
consensus_5217#0 GGCGGTGCTGAGAACTGACGACTCAAAAGTATTCAACAACTACCATGATCTGGTACTGAA 1258
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 GTTACTAAGTACGGAAAGCTCCACCACGGAAGAAGCCAAGGCAAATGCGGAAGATATTAC 1318
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 GAAGCAGCTGGGTGAACTGACGCCTGTTGTGAAGAACATTGCTGGCAACTTTAAGAAAGC 1378
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 TGGTGTAACTCCAGTAGAGTAAAGAAGGAGAGAGGTCGTTCGATCGGTCGTTAGGTCCTT 1438
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 AGTGCATTAAATTGGGTTGGATCTTACTTGTGTGCTGGAGGTATGGTTAATATTCTTTAT 1498
consensus_5217#1 ------------------------------------------------------------
consensus_5217#0 TTTTTCGCGTCAATAAAACCCGAGCTTGTTAATT 1532
consensus_5217#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||