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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1179 fasta sequence
[AATCAAAAACACTTCTTCGTTCTACAGACACACACACACACAGAGTCACACAAGGGAGTGGGAGGTAGAAGAAAAAGTATGCGATCTCGACCGGCACTAGCAATCGATAGTTTAAGTTTCGTTCTTTCTATGTTTTAGCTAACCCCTGTTCGATTCATTACACATAGCGCACAGTGTGTTCACACGTCCGTCATCTGAAGTAGCGCTTTCACACTCACTTTCGACTACGTTTTGTCACATGTAGTATGTGTGTATCAGTATCGTTTCCCGCCTCACACGGGTTGATTTTTTTTCTTTCATTATTCATTAAGCGATAAACTCGTTGATTTGCAAGCGATTATTTTATACCATTCTGATGCGAGAATTTGTTTCTTTACCTTAGCCACACACTTACTGAAAAGGTTCTGTCTTTTTTTACCGTCTTTCTTTTTGTACAAAAAAAAAAAAACTAAACCCCACACCGAGCAGTCATTGTGAAGGCAACGGATCCGCGGCACCCGGAACCGGGAAGCAAGCCGCGACCGCCAATGCCACTCGCGCTGCTGCCCATAATGGCACGCTGGCAGAAGGGCAGCATTGGCTCAAAGGCCTAGAACGCAGTGAGGGGAGGGAAGGGTATAGATAACTGAAACGTCCCCACGACCGACAACCCACCCACCCACAACACAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAGCCGATAGTAGTGTGGTGCCTGCCAAATTCCACCGCCCGTAACACATCGCGTTCCTCAGCACGCACCGGCGAGGGATGTATACACCCTACATGTTCCTATTGTTTAAGAGGATGTTGTTTTTTTTTTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAAC]
[+] EMBL BX626941 [AATCAAAAACACTTCTTCGTTCTACAGACACACACACACACAGAGTCACACAAGGGAGTGGGAGGTAGAAGAAAAAGTATGCGATCTCGACCGGCACTAGCAATCGATAGTTTAAGTTTCGTTCTTTCTATGTTTTAGCTAACCCCTGTTCGATTCATTACACATAGCGCACAGTGTGTTCACACGTCCGTCATCTGAAGTAGCGCTTTCACACTCACTTTCGACTACGTTTTGTCACATGTAGTATGTGTGTATCAGTATCGTTTCCCGCCTCACACGGGTTGATTTTTTTTCTTTCATTATTCATTAAGCGATAAACTCGTTGATTTGCAAGCGATTATTTTATACCATTCTGATGCGAGAATTTGTTTCTTTACCTTAGCCACACACTTACTGAAAAGGTTCTGTCTTTTTTTACCGTCTTTCTTTTTGTACAAAAAAAAAAAAACTAAACCCCACACCGAGCAGTCATTGTGAAGGCAACGGATCCGCGGCACCCGGAACCGGGAAGCAAGCCGCGACCGCCAATGCCACTCGCGCTGCTGCCCATAATGGCACGCTGGCAGAAGGGCAGCATTGGCTCAAAGGCCTAGAACGCAGTGAGGGGAGGGAAGGGTATAGATAACTGAAACGTCCCCACGACCGACAACCCACCCACCCACAACACAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATG ]
[+] EMBL BM626789 [ ccgtggAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAGCCGATAGTAGTGTGGTGCCTGCCAAATTCCACCGCCCGTAACACATCGCGTTCCTCAGCACGCACCGGCGAGGGATGTATACACCCTACATGTTCCTATTGTTTAAGAGGATGTTGTTTTTTTTTTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAAC]
consensusID : consensus_5220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[CAGAATTCGCCCCCGAGGTNTTATAGCAGCCGATAGTAGTGTGTGTGCTGCCAAATTCCACCTGCCCTGTAACACATCGCTGTTCCTCAGCACTGCACCTGGCGAGGGATGTATACACCCTAACATGTTCCTATTGTTTAAGAGGATGTTTGTTAATATATTATATTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAACAATGGAATGCATTAGGAGCAAGGCAGAGACAAAACACACAACAGCTGCCATAAGGAGGGACATGCCCGTAGGAAACGCTCAATTGACGGAAAACAGGTGGAAAACAAGAGGGTTAGTAAACTATGTGGGATGTCACTCGCTACCTGTTACGATGAGTGAAAGCGGTACGGACAAGCCTGAGGTGTGCCATGAATTCCATAGTTTGTACCCCCATCCGCAGCTTAAATCGACTGAAAGNGGAAAGCATCGACGGATCGTGGCGTGTTAAATATATTACATAGCGTTTTGCTTTCGGGATTTTGCTATTTCCGTTTTGAAATTCTCCATGCTNTTGCCTAGCTT]
[+] EMBL AL931489 [CAGAATTCGCCCCCGAGGTNTTATAGCAGCCGATAGTAGTGTGTGTGCTGCCAAATTCCACCTGCCCTGTAACACATCGCTGTTCCTCAGCACTGCACCTGGCGAGGGATGTATACACCCTAACATGTTCCTATTGTTTAAGAGGATGTTTGTTAATATATTATATTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAACAATGGAATGCATTAGGAGCAAGGCAGAGACAAAACACACAACAGCTGCCATAAGGAGGGACATGCCCGTAGGAAACGCTCAATTGACGGAAAACAGGTGGAAAACAAGAGGGTTAGTAAACTATGTGGGATGTCACTCGCTACCTGTTACGATGAGTGAAAGCGGTACGGACAAGCCTGAGGTGTGCCATGAATTCCATAGTTTGTACCCCCATCCGCAGCTTAAATCGACTGAAAGNGGAAAGCATCGACGGATCGTGGCGTGTTAAATATATTACATAGCGTTTTGCTTTCGGGATTTTGCTATTTCCGTTTTGAAATTCTCCATGCTNTTGCCTAGCTT]
consensusID : consensus_5220#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GAATTCCCGAGGTTTAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAACCGATAGTAGTGTGGTGCCTGCCAAATTCCAACCGGCCGTAACACATCGCGTTCCTCAGCACGCACCGGGGAGGGATGTATTACACCCTACATGTTCCTATTGTTTAAAGAGGATGTTATTAAGCTTACTTGTAGAGAAAGGGGTGTTAGGAAAAGGTTTCGTGCAAAGTTCGCTATCATTAGTCTTTCCCTATAAGTGCGTGTGTGTATGTACCGAGCGCGCACAAACACATACACCACTGACTTCCGAGCACGGCGTAATCCTTTATCCTTNGGGGCCTTCCTTCCTCNACTTAGCACAAGTGCATCGAGCTCGCAAACACACAGAAATAACTGGAATCCATAGGAGCAAGGCAGAGCACAAAACACACAACAGCGCCATAGGAGGGACATGCCCGAGGANACGCTCAATGAGGAAACAGG]
[+] EMBL AL695660 [GAATTCCCGAGGTTTAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAACCGATAGTAGTGTGGTGCCTGCCAAATTCCAACCGGCCGTAACACATCGCGTTCCTCAGCACGCACCGGGGAGGGATGTATTACACCCTACATGTTCCTATTGTTTAAAGAGGATGTTATTAAGCTTACTTGTAGAGAAAGGGGTGTTAGGAAAAGGTTTCGTGCAAAGTTCGCTATCATTAGTCTTTCCCTATAAGTGCGTGTGTGTATGTACCGAGCGCGCACAAACACATACACCACTGACTTCCGAGCACGGCGTAATCCTTTATCCTTNGGGGCCTTCCTTCCTCNACTTAGCACAAGTGCATCGAGCTCGCAAACACACAGAAATAACTGGAATCCATAGGAGCAAGGCAGAGCACAAAACACACAACAGCGCCATAGGAGGGACATGCCCGAGGANACGCTCAATGAGGAAACAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5220#0 AATCAAAAACACTTCTTCGTTCTACAGACACACACACACACAGAGTCACACAAGGGAGTG 60
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 GGAGGTAGAAGAAAAAGTATGCGATCTCGACCGGCACTAGCAATCGATAGTTTAAGTTTC 120
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 GTTCTTTCTATGTTTTAGCTAACCCCTGTTCGATTCATTACACATAGCGCACAGTGTGTT 180
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 CACACGTCCGTCATCTGAAGTAGCGCTTTCACACTCACTTTCGACTACGTTTTGTCACAT 240
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 GTAGTATGTGTGTATCAGTATCGTTTCCCGCCTCACACGGGTTGATTTTTTTTCTTTCAT 300
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 TATTCATTAAGCGATAAACTCGTTGATTTGCAAGCGATTATTTTATACCATTCTGATGCG 360
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 AGAATTTGTTTCTTTACCTTAGCCACACACTTACTGAAAAGGTTCTGTCTTTTTTTACCG 420
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 TCTTTCTTTTTGTACAAAAAAAAAAAAACTAAACCCCACACCGAGCAGTCATTGTGAAGG 480
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 CAACGGATCCGCGGCACCCGGAACCGGGAAGCAAGCCGCGACCGCCAATGCCACTCGCGC 540
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 TGCTGCCCATAATGGCACGCTGGCAGAAGGGCAGCATTGGCTCAAAGGCCTAGAACGCAG 600
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 TGAGGGGAGGGAAGGGTATAGATAACTGAAACGTCCCCACGACCGACAACCCACCCACCC 660
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 ACAACACAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATGA 720
consensus_5220#2 ------------------GAATTCCCGAGGTT----------TAACAACGTCCCTTATGA 32
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 AACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTG 780
consensus_5220#2 AACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTG 92
consensus_5220#1 ------------------------------------------------------------
consensus_5220#0 TATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGT 840
consensus_5220#2 TATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGT 152
consensus_5220#1 ------------------------------------CAGAATTCGC-----CCCCGAGGT 19
* * ** * * * **
consensus_5220#0 CGGATAGCAAGCCGATAGTAGTGTGGTGCCTGCCAAATTCCA-CCGCCC-GTAACACATC 898
consensus_5220#2 CGGATAGCAAACCGATAGTAGTGTGGTGCCTGCCAAATTCCAACCGGCC-GTAACACATC 211
consensus_5220#1 NTTATAGCA-GCCGATAGTAGTGTGTGTGCTGCCAAATTCCACCTGCCCTGTAACACATC 78
****** ************** ************* * * ** **********
consensus_5220#0 GC-GTTCCTCAGCAC-GCACC-GGCGAGGGATGTAT-ACACCCTA-CATGTTCCTATTGT 953
consensus_5220#2 GC-GTTCCTCAGCAC-GCACC-GGGGAGGGATGTATTACACCCTA-CATGTTCCTATTGT 267
consensus_5220#1 GCTGTTCCTCAGCACTGCACCTGGCGAGGGATGTAT-ACACCCTAACATGTTCCTATTGT 137
** ************ ***** ** *********** ******** **************
consensus_5220#0 TTAA-GAGGATGTTGTTT------TTTTTTTGCTTGCTTGTAGAGAAAGGG-TGTTAGAA 1005
consensus_5220#2 TTAAAGAGGATGTTATT------------AAGCTTACTTGTAGAGAAAGGGGTGTTAGGA 315
consensus_5220#1 TTAA-GAGGATGTTTGTTAATATATTATATTGCTTGCTTGTAGAGAAAGGG-TGTTAGAA 195
**** ********* * **** *************** ****** *
consensus_5220#0 AAGG--TTTGTGCAAAGTTCGCCTATCATTTGTCTT-CCCTATAAGTGCGTGTGTGTACG 1062
consensus_5220#2 AAAGGTTTCGTGCAAAGTTCGC-TATCATTAGTCTTTCCCTATAAGTGCGTGTGTGTATG 374
consensus_5220#1 AAGG--TTTGTGCAAAGTTCGCCTATCATTTGTCTT-CCCTATAAGTGCGTGTGTGTACG 252
** * ** ************* ******* ***** ********************* *
consensus_5220#0 TACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTAT 1122
consensus_5220#2 TACCGA-GCGCGCACAAACACATACACCACTGACTTCCGAGCACGG-CGTAATCCTTTAT 432
consensus_5220#1 TACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTAT 312
*** **** **** ********* * **************** *** *********
consensus_5220#0 CCTTTGGGGCATTAATTA---TAATTAGCACACGTGCATCGAGCTTTGAAAAA-ACGAAA 1178
consensus_5220#2 CCTTNGGGGCCTTCCTTCCTCNACTTAGCACAAGTGCATCGAGCTCGCAAACACACAGAA 492
consensus_5220#1 CCTTTGGGGCATTAATTA---TAATTAGCACACGTGCATCGAGCTTTGAAAAA-ACGAAA 368
**** ***** ** ** * ******** ************ *** * ** **
consensus_5220#0 C----------------------------------------------------------- 1179
consensus_5220#2 ATAACTGGAATCCATAGGAGCAAGGCAGAGCACAAAACACACAACAGCGCCATAGGAGGG 552
consensus_5220#1 CAATGGAATGCATTAGGAGCAAGGCAGAGACAAAACACACAACAGCTGCCATAAGGAGGG 428
consensus_5220#0 ------------------------------------------------------------
consensus_5220#2 ACATGCCCGAGGANACGCTCAATGAGGAAACAGG-------------------------- 586
consensus_5220#1 ACATGCCCGTAGGAAACGCTCAATTGACGGAAAACAGGTGGAAAACAAGAGGGTTAGTAA 488
consensus_5220#0 ------------------------------------------------------------
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 ACTATGTGGGATGTCACTCGCTACCTGTTACGATGAGTGAAAGCGGTACGGACAAGCCTG 548
consensus_5220#0 ------------------------------------------------------------
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 AGGTGTGCCATGAATTCCATAGTTTGTACCCCCATCCGCAGCTTAAATCGACTGAAAGNG 608
consensus_5220#0 ------------------------------------------------------------
consensus_5220#2 ------------------------------------------------------------
consensus_5220#1 GAAAGCATCGACGGATCGTGGCGTGTTAAATATATTACATAGCGTTTTGCTTTCGGGATT 668
consensus_5220#0 -------------------------------------------
consensus_5220#2 -------------------------------------------
consensus_5220#1 TTGCTATTTCCGTTTTGAAATTCTCCATGCTNTTGCCTAGCTT 711
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||