These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 963 fasta sequence [CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACTCCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCATTCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACCACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGNGATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTGGCG] [+] EMBL BX467432 [CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACTCCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCATTCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACCACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGNGATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTGGCG] consensusID : consensus_5221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 899 fasta sequence [TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGCGGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC] [+] EMBL CNS09842 [TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGCGGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC] [+] EMBL BX623600 [ GACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGANGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCG ] [-] EMBL CNS09843 [ GGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAATTGGCACACGAACCGCGGGCAGGCGATACGCGACTCGATGAAAAAAAAAACCGACGCGGGGGGGGAACCGTTG TTACGCACCATCACAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5221#0 CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTC 60 consensus_5221#1 -------------------------------------------TCCTGTTTTTGTGCGTC 17 ***************** consensus_5221#0 GACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCG 120 consensus_5221#1 GACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCG 77 *********************** ***** ** *************************** consensus_5221#0 GATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG 180 consensus_5221#1 GATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG 137 ******************* **************************************** consensus_5221#0 ACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGG 240 consensus_5221#1 ATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGG 197 * ******************************** ***** *************** *** consensus_5221#0 AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACT 300 consensus_5221#1 AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACT 257 ******************************************* ******** ******* consensus_5221#0 CCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA 360 consensus_5221#1 CCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA 317 **************** ******************************************* consensus_5221#0 ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA 420 consensus_5221#1 ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA 377 ************************************************************ consensus_5221#0 GCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCAT 480 consensus_5221#1 GCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCAT 437 ********************** *********************** ************* consensus_5221#0 TCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG 540 consensus_5221#1 TCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG 497 **** ******************************************************* consensus_5221#0 TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG 600 consensus_5221#1 TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG 557 ************************************************************ consensus_5221#0 GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC 660 consensus_5221#1 GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC 617 ************************************************************ consensus_5221#0 TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACC 720 consensus_5221#1 TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGG-ATAATGCGTGCCACCGGTACC 676 ************************************** ********************* consensus_5221#0 ACGATGGAAGANGTTCGATTT-GGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGG 779 consensus_5221#1 ACGATGGAGGAGGTTCGATTTTGGCAGTACAAA--TGGCACAC--GAACCGCGAGCAGG- 731 ******** ** ********* ******** ** ******** *** * ******* consensus_5221#0 NGATTAACGGCGAACTTCNGGANTTAAGAAA---GGGCAAGAACCGGAAGCCGAGAAGGG 836 consensus_5221#1 CGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACC 791 *** ** * * * ** * ** ** * * * ** * consensus_5221#0 AAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCC 896 consensus_5221#1 ATCACAACAAGTTCGGCACCGCCAAC-CTCGATCTCGACGCGATCGAGGCGGAAAAGCGC 850 * *** * * *** * * * * *** * * ** * ** * * * consensus_5221#0 GAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTC 956 consensus_5221#1 AAGATTCAGCTGGCGGTG-GAGCGGGAAACGTTGATGAAAAAGCTGGAAC---------- 899 * * * * ****** * * * * ** * * consensus_5221#0 AGTGGCG 963 consensus_5221#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||