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Anopheles gambiae
cluster # 5221 cluster # 5221       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5221#0 length = 963 sequences # 1  
consensus_5221#1 length = 899 sequences # 3  

consensusID : consensus_5221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 963
fasta sequence
                              [CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACTCCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCATTCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACCACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGNGATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTGGCG]

[+] EMBL BX467432             [CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACTCCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCATTCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACCACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGNGATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTGGCG]


>consensus_5221#0 CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTC GACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCG GATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG ACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGG AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACT CCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA GCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCAT TCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACC ACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGN GATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGG GAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAA CCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTG GCG



consensusID : consensus_5221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 899
fasta sequence
                              [TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGCGGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC]

[+] EMBL CNS09842             [TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGCGGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC]
[+] EMBL BX623600             [                 GACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGANGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCG                                                                                                                                                          ]
[-] EMBL CNS09843             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAATTGGCACACGAACCGCGGGCAGGCGATACGCGACTCGATGAAAAAAAAAACCGACGCGGGGGGGGAACCGTTG TTACGCACCATCACAAC                                                                                                    ]


>consensus_5221#1 TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCG GTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCA TGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGA CAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGT GTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTG CTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGC AACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAA CTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGT TGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGC GGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTC CGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAAT GCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAA CCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTT GCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGC GGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5221#0      CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTC 60
consensus_5221#1      -------------------------------------------TCCTGTTTTTGTGCGTC 17
                                                                 *****************

consensus_5221#0      GACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCG 120
consensus_5221#1      GACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCG 77
                      *********************** ***** ** ***************************

consensus_5221#0      GATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG 180
consensus_5221#1      GATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG 137
                      ******************* ****************************************

consensus_5221#0      ACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGG 240
consensus_5221#1      ATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGG 197
                      * ******************************** ***** *************** ***

consensus_5221#0      AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACT 300
consensus_5221#1      AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACT 257
                      ******************************************* ******** *******

consensus_5221#0      CCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA 360
consensus_5221#1      CCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA 317
                      **************** *******************************************

consensus_5221#0      ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA 420
consensus_5221#1      ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA 377
                      ************************************************************

consensus_5221#0      GCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCAT 480
consensus_5221#1      GCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCAT 437
                      ********************** *********************** *************

consensus_5221#0      TCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG 540
consensus_5221#1      TCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG 497
                      **** *******************************************************

consensus_5221#0      TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG 600
consensus_5221#1      TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG 557
                      ************************************************************

consensus_5221#0      GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC 660
consensus_5221#1      GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC 617
                      ************************************************************

consensus_5221#0      TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACC 720
consensus_5221#1      TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGG-ATAATGCGTGCCACCGGTACC 676
                      ************************************** *********************

consensus_5221#0      ACGATGGAAGANGTTCGATTT-GGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGG 779
consensus_5221#1      ACGATGGAGGAGGTTCGATTTTGGCAGTACAAA--TGGCACAC--GAACCGCGAGCAGG- 731
                      ******** ** ********* ******** **  ********   *** * ******* 

consensus_5221#0      NGATTAACGGCGAACTTCNGGANTTAAGAAA---GGGCAAGAACCGGAAGCCGAGAAGGG 836
consensus_5221#1      CGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACC 791
                       ***   ** *    *     *   **   *   **   ** * * *  **  *      

consensus_5221#0      AAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCC 896
consensus_5221#1      ATCACAACAAGTTCGGCACCGCCAAC-CTCGATCTCGACGCGATCGAGGCGGAAAAGCGC 850
                      *    ***  * * ***     *  * * * *** * * ** *       ** *  *  *

consensus_5221#0      GAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTC 956
consensus_5221#1      AAGATTCAGCTGGCGGTG-GAGCGGGAAACGTTGATGAAAAAGCTGGAAC---------- 899
                       * *     *      *  ******  * *    * *   **    *  *          

consensus_5221#0      AGTGGCG 963
consensus_5221#1      -------
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)