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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 963 fasta sequence
[CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACTCCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCATTCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACCACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGNGATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTGGCG]
[+] EMBL BX467432 [CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACTCCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCATTCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACCACGATGGAAGANGTTCGATTTGGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGGNGATTAACGGCGAACTTCNGGANTTAAGAAAGGGCAAGAACCGGAAGCCGAGAAGGGAAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCCGAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTCAGTGGCG]
consensusID : consensus_5221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 899 fasta sequence
[TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGCGGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC]
[+] EMBL CNS09842 [TCCTGTTTTTGTGCGTCGACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACCATCACAACAAGTTCGGCACCGCCAACCTCGATCTCGACGCGATCGAGGCGGAAAAGCGCAAGATTCAGCTGGCGGTGGAGCGGGAAACGTTGATGAAAAAGCTGGAAC]
[+] EMBL BX623600 [ GACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCGGATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCGATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGGAGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACTCCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGAACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTAGCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCATTCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCGTGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGGGCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCCTGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGATAATGCGTGCCACCGGTACCACGATGGAGGANGTTCGATTTTGGCAGTACAAATGGCACACGAACCGCGAGCAGGCGATACGCGACTCG ]
[-] EMBL CNS09843 [ GGATAATGCGTGCCACCGGTACCACGATGGAGGAGGTTCGATTTTGGCAGTACAATTGGCACACGAACCGCGGGCAGGCGATACGCGACTCGATGAAAAAAAAAACCGACGCGGGGGGGGAACCGTTG TTACGCACCATCACAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5221#0 CAAGAATCGCCACGAGGCGGTAGTGAACATTCCGTTCGATTTTTCCTGTTTTTGTGCGTC 60
consensus_5221#1 -------------------------------------------TCCTGTTTTTGTGCGTC 17
*****************
consensus_5221#0 GACTGGACAAACAGTGAAGAATGATTCGAAGTACGGTGTACCGGTTCTGTGTTCCGGGCG 120
consensus_5221#1 GACTGGACAAACAGTGAAGAATGCTTCGACGTGCGGTGTACCGGTTCTGTGTTCCGGGCG 77
*********************** ***** ** ***************************
consensus_5221#0 GATTTGTGTCGGCTGGACTGCTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG 180
consensus_5221#1 GATTTGTGTCGGCTGGACTACTACCGTTCACGCTCAACGACCATGATCAGGTCAAAATCG 137
******************* ****************************************
consensus_5221#0 ACACCAAAACCGTACAGAGCATGTACGAGGAGGCGCCCGGTGACAAACAAACCGGCGTGG 240
consensus_5221#1 ATACCAAAACCGTACAGAGCATGTACGAGGAGGCACCCGGCGACAAACAAACCGGCATGG 197
* ******************************** ***** *************** ***
consensus_5221#0 AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTATCGAGCGAACTCAACT 300
consensus_5221#1 AGCGGCTACAGATGATGTTTACGATTGATGAATTTGGCCGAGTGTCGAGCGAGCTCAACT 257
******************************************* ******** *******
consensus_5221#0 CCATCTATCAGGCCGGCTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA 360
consensus_5221#1 CCATCTATCAGGCCGGTTTTCTTGGCTTCCTGTTCGGCGCTTGCTACGGTGGGTTCGTGA 317
**************** *******************************************
consensus_5221#0 ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA 420
consensus_5221#1 ACTCCCGCGTCGCCTACATGAACTTCCTCGAGCGCAACCAGGCAACGGCGTTCCAGTCTA 377
************************************************************
consensus_5221#0 GCTTCGAGGCAAAAAAGAAACTACAGGACCAGGTTACGCTCAACTTTGCCAAGGGAGCAT 480
consensus_5221#1 GCTTCGAGGCAAAAAAGAAACTGCAGGACCAGGTTACGCTCAACTTCGCCAAGGGAGCAT 437
********************** *********************** *************
consensus_5221#0 TCCGCTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG 540
consensus_5221#1 TCCGTTGGGGTTGGCGTTTGGCACTGTTCACCACCAGCTATGTTGGCATTCAAACGGTCG 497
**** *******************************************************
consensus_5221#0 TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG 600
consensus_5221#1 TGTCGGTGTACCGAGGGAAATCCTCCCTGTACGAGTATCTGGCGGCCGGTGGCGTTACGG 557
************************************************************
consensus_5221#0 GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC 660
consensus_5221#1 GCGCGATGTACAAATTCAGCATGGGACTGCGCGGGATGGCCTCCGGTGGGCTCGTTGGCC 617
************************************************************
consensus_5221#0 TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGGGATAATGCGTGCCACCGGTACC 720
consensus_5221#1 TGGCGCTCGGCGGTCTGGCCGGTGGACTGTCGCTCGGG-ATAATGCGTGCCACCGGTACC 676
************************************** *********************
consensus_5221#0 ACGATGGAAGANGTTCGATTT-GGCAGTACCAAATTGGCACACCGAAACGGGGAGCAGGG 779
consensus_5221#1 ACGATGGAGGAGGTTCGATTTTGGCAGTACAAA--TGGCACAC--GAACCGCGAGCAGG- 731
******** ** ********* ******** ** ******** *** * *******
consensus_5221#0 NGATTAACGGCGAACTTCNGGANTTAAGAAA---GGGCAAGAACCGGAAGCCGAGAAGGG 836
consensus_5221#1 CGATACGCGACTCGATGAAAAAACAAACCGACGCGGAGGAGGAACCGTTGCTAACGCACC 791
*** ** * * * ** * ** ** * * * ** *
consensus_5221#0 AAGGGAACCCGGTTGGCTTAAACGNCACCCAATCACCAAGCAANGTTCCGGGCACCGGCC 896
consensus_5221#1 ATCACAACAAGTTCGGCACCGCCAAC-CTCGATCTCGACGCGATCGAGGCGGAAAAGCGC 850
* *** * * *** * * * * *** * * ** * ** * * *
consensus_5221#0 GAAACCTNCCGAATTCTCCGAGCGGAGATCTCCAAGGGGGAAAAAAGGGCCAAGGAATTC 956
consensus_5221#1 AAGATTCAGCTGGCGGTG-GAGCGGGAAACGTTGATGAAAAAGCTGGAAC---------- 899
* * * * ****** * * * * ** * *
consensus_5221#0 AGTGGCG 963
consensus_5221#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||