These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1215 fasta sequence [CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACACACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGCCGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGATGAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTACTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGAAACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAGTCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACT-GTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG------CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGGGGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAACGAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGTATGCTTTGTGGATTT] [+] EMBL BM629026 [CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACACACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGCCGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGATGAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTACTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGAAACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAGTCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACT GTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGCGCGGCCGGCAGCGTACAACCGACCACGTTCC ] [+] EMBL BX619609 [ TCGAGCCGGGC ANGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGGTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCCGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCGTCCTTGCTCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGG ] [+] EMBL BM620122 [ ccgCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGGGGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAACGAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGTATGCTTTGTGGATTT] consensusID : consensus_5225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTCGAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGTTTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGACACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC] [+] EMBL AL695698 [AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTCGAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGTTTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGACACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5225#0 CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACAC 60 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 ACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGC 120 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 CGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGAT 180 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 GAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTA 240 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 CTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGA 300 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 AACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAG 360 consensus_5225#1 -----------------------------------------------AGATCGCCGA--- 10 ***** * consensus_5225#0 TCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGA 420 consensus_5225#1 --GGTT---AATCGTG-AGCTG-TGCGGCTCGAGCCGAGCGAGGTC-AGACGCTGTTCGA 62 **** ****** ***** *********************** ************* consensus_5225#0 GGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCCACTGGT 480 consensus_5225#1 GGCGCTGCAGGGCGTT-CGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTC-ACTGGT 120 **************** ************************************ ****** consensus_5225#0 TTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG 540 consensus_5225#1 TTGCTGCGGGAAGGCGG-TGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG 179 ***************** ****************************************** consensus_5225#0 CATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTT 600 consensus_5225#1 CATC-TTGCCCGGGAAGCGGAACGGGAGTG-TTGCCCGTGAGCGATCTGATGGAAATGTT 237 **** ************************* ***************************** consensus_5225#0 GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG------CGGCAGCGTACAACC 654 consensus_5225#1 GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACC 297 ************************************ ** *************** consensus_5225#0 GACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCG-CC 713 consensus_5225#1 GAC-ACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCC 356 *** **************** ************************************ ** consensus_5225#0 TGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGA-GCTG 772 consensus_5225#1 TGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTG 416 ********* ********************************************* **** consensus_5225#0 TCCGCTGGGGAGAACAGCAGC-AGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGA 831 consensus_5225#1 TCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGA 476 ********************* ***** ****************** *********** consensus_5225#0 TAGGGAAACGAACCGTTTAATTC-GGGCACTGTT-GGAGCTGTCCGAGAAGCAGTGCAGC 889 consensus_5225#1 TACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC-------------------- 516 ** ******************** ********** ***** consensus_5225#0 CAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCA 949 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 CTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTG 1009 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 CTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAG 1069 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 GACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTC 1129 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 GACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAG 1189 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 AAGTCATTTGTATGCTTTGTGGATTT 1215 consensus_5225#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||