cluster # 5226

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Anopheles gambiae
cluster # 5226 cluster # 5226 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5226#0 length = 464 sequences # 3

consensus_5226#1 length = 84 sequences # 1

consensusID : consensus_5226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 464
fasta sequence

                              [CCGAGAAGATATAAGAAAGTAACGCATAATTTGCTGCTCGCATGCATGTGATACACTTCGTGTTTCTGTTTAAACTCCGTAAATACAAATTCACTTCGCTTGATTCAATAGTTCGCTGAAAGCTTCATCATGTATCGTCCGGCCGGTTATGATGATTCCGATGACGATGATTTCGATGATTTTGGATACATG-AGTAGCTCATATCCGAAGCAAAAACAAAATACAGCGTTTATGCAGGAGGTCAAACCACCAGA-GGAAGACTATGATACCCTCCTGTATTACGCCATCCTCGATGGGCAACTAGATGAAACGAAACGTATTATCAGGCAGGATGCATATTTGCGTGGCGGTGGAATGCTACGGCAAGGATGGCCAGCTATGTTTTATGCGTGTTTCGAAGCGCATCTACCTATAGTGGAGTATTTCCTGCGTGATGAAAAGATGGATGTGAATCGCCAGTACAA]

[+] EMBL BM592648             [CCGAGAAGATATAAGAAAGTAACGCATAATTTGCTGCTCGCATGCATGTGATACACTTCGTGTTTCTGTTTAAACTCCGTAAATACAAATTCACTTCGCTTGATTCAATAGTTCGCTGAAAGCTTCATCATGTATCGTCCGGCCGGTTATGATGATTCCGATGACGATGATTTCAATGATTTTGGATACATG AGTAGCTCATATCCGAAACAAAAACAAAATACAGCGTTTATGCAGGAGGTCAAACCACCAGA GGAAGACTATGATACCCTCCTGTATTACGCCATCCTCGATGGGCAACTAGATGAAACGAAACGTATTATCAGGCAGGATGCATATTTGCGTGGCGGTGGAATGCTACGGCAAGGATGGCCAGCTATGTTTTATGCGTGTTTCGAAGCGCATCTACCTATAGTGGAGTATTTCCTGCGTGATGAAAAGATGGATGTGAATCGCCAGTACAA]
[+] EMBL AL695731             [                  ccagtaCATAA TTGCTGCTCGCATGCATGTGATACACTTCGT TTTCTGTTTAAACTCCG AAATATAAATTCAC TCGCTTGA TCAATAATTCGCTGAAAGCTTCATCATGTATCGTCCGGCCGGTTATGATGATCCCGATGAGGATGATTTCGATGATTTTGGATACATG AGTAGCTCATATCCGAAGC AAAACAAAATACAG GTTTATGCAGGAGGTCAAA CA CAGAGGGAAGACTATGATACCCTCCTGTATTA                                                                                                                                                                                       ]
[+] EMBL CNS08Q1K             [                                                                                                                                                                        GATTTCGATGATTTTGGATACATGCAGTAGCTCATATCCGAAGCAAAAACAAAATACAGCGTTTATGCAGGAGGTCAAACCACCAGA GGAAGACTATGATACCCTCCTGTATTACGCCATCCTCGATGGGCAACTAGATGAAACGAAACGTATTATCAGGTAGGATGCATATTTGCGTGGCGGTGGAATGCTACGGCAAGGA                                                                                               ]




>consensus_5226#0
CCGAGAAGATATAAGAAAGTAACGCATAATTTGCTGCTCGCATGCATGTGATACACTTCG
TGTTTCTGTTTAAACTCCGTAAATACAAATTCACTTCGCTTGATTCAATAGTTCGCTGAA
AGCTTCATCATGTATCGTCCGGCCGGTTATGATGATTCCGATGACGATGATTTCGATGAT
TTTGGATACATGAGTAGCTCATATCCGAAGCAAAAACAAAATACAGCGTTTATGCAGGAG
GTCAAACCACCAGAGGAAGACTATGATACCCTCCTGTATTACGCCATCCTCGATGGGCAA
CTAGATGAAACGAAACGTATTATCAGGCAGGATGCATATTTGCGTGGCGGTGGAATGCTA
CGGCAAGGATGGCCAGCTATGTTTTATGCGTGTTTCGAAGCGCATCTACCTATAGTGGAG
TATTTCCTGCGTGATGAAAAGATGGATGTGAATCGCCAGTACAA

consensusID : consensus_5226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [CCGGAAAGAAACGCATAATTTGCTGCTCGAATGCATGTGATACACTTCGTTTTCTGTTTAAACTCCGAAATATAAATTCACCTC]

[+] EMBL BM598618             [CCGGAAAGAAACGCATAATTTGCTGCTCGAATGCATGTGATACACTTCGTTTTCTGTTTAAACTCCGAAATATAAATTCACCTC]




>consensus_5226#1
CCGGAAAGAAACGCATAATTTGCTGCTCGAATGCATGTGATACACTTCGTTTTCTGTTTA
AACTCCGAAATATAAATTCACCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5226#0      CCGAGAAGATATAAGAAAGTAACGCATAATTTGCTGCTCGCATGCATGTGATACACTTCG 60
consensus_5226#1      -----------CCGGAAAGAAACGCATAATTTGCTGCTCGAATGCATGTGATACACTTCG 49
                                    ***** ******************** *******************

consensus_5226#0      TGTTTCTGTTTAAACTCCGTAAATACAAATTCACTTCGCTTGATTCAATAGTTCGCTGAA 120
consensus_5226#1      T-TTTCTGTTTAAACTCCG-AAATATAAATTCACCTC----------------------- 84
                      * ***************** ***** ******** **                       

consensus_5226#0      AGCTTCATCATGTATCGTCCGGCCGGTTATGATGATTCCGATGACGATGATTTCGATGAT 180
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      TTTGGATACATGAGTAGCTCATATCCGAAGCAAAAACAAAATACAGCGTTTATGCAGGAG 240
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      GTCAAACCACCAGAGGAAGACTATGATACCCTCCTGTATTACGCCATCCTCGATGGGCAA 300
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      CTAGATGAAACGAAACGTATTATCAGGCAGGATGCATATTTGCGTGGCGGTGGAATGCTA 360
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      CGGCAAGGATGGCCAGCTATGTTTTATGCGTGTTTCGAAGCGCATCTACCTATAGTGGAG 420
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      TATTTCCTGCGTGATGAAAAGATGGATGTGAATCGCCAGTACAA 464
consensus_5226#1      --------------------------------------------