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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1218 fasta sequence
[CAACAACAACAATGTCATTAAGACATCCGTAGCATTGTTGAATGTCTCCCTTATTGTTATTTTATACTCCTTATAGTTATAGTATTTCTTCTACCTTTTTCTCGAGGTCGCTGTTGTCGGCGCTCCTCTGCAGCTCCAGGATCTCGATTTGCTGATCCTCGACGTCCTTCTCATTCGGGATGTACGGCCCGATATATTCGCCGTCCTCATCAAAATTTCTTAGTCCGTGCCAGGTGCCCATCTTCTTTGCTCGGCTGATAGTTGGTTTAAGCTGTTGGGCGGCTTCCGGCTATCGTTTGCTGGTGGGCGGCGTGCGTCTTGCTGTTAGGCGTTTTGCTGTGGACGTCTCTTTGTAGGCAGCTTGCAGTTGTCGTCTGATTAACACTTGATCGGCACTTTGTCTTTTATACCCGTTTGTCACTTCACTATTATTCTTTTTTCTGCTATTTATTGGGGCAAAAACAACACCTTTAAAGCTTGTTTTGCGCCTGATTTTCACTATTTTGTAAACTATTTTGAGCGCTTTTGAAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGTGTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGACCTATAACTCATATTTTTGTTATGGCTAAATAAATACACGTGCTCACTATTATTTTCCTTTTGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTTTAGGTACTTGATACTTGTACGCAAGAATGTGTTTTTGCTAATTTTTGAAAATTGTACCACTTTTAGAGTACACAGTTATTTTACACGTTTGGTGTCACCTTATAGCTCAAACTGCACCACTCGCACTTTGTTGAAAACTGATTATAATAGCGGAGAAAGAAAAATGTAGGAAATATTTAAAATAGACATCCTAGCGAGGCAAACGTGTACAATATCCAAAATAGAAAACCCTTCAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAACACAGTGGCCTTAATCTCACTAACACAAACCAAGAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAGTATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAA]
[+] EMBL BX607728 [CAACAACAACAATGTCATTAAGACATCCGTAGCATTGTTGAATGTCTCCCTTATTGTTATTTTATACTCCTTATAGTTATAGTATTTCTTCTACCTTTTTCTCGAGGTCGCTGTTGTCGGCGCTCCTCTGCAGCTCCAGGATCTCGATTTGCTGATCCTCGACGTCCTTCTCATTCGGGATGTACGGCCCGATATATTCGCCGTCCTCATCAAAATTTCTTAGTCCGTGCCAGGTGCCCATCTTCTTTGCTCGGCTGATAGTTGGTTTAAGCTGTTGGGCGGCTTCCGGCTATCGTTTGCTGGTGGGCGGCGTGCGTCTTGCTGTTAGGCGTTTTGCTGTGGACGTCTCTTTGTAGGCAGCTTGCAGTTGTCGTCTGATTAACACTTGATCGGCACTTTGTCTTTTATACCCGTTTGTCACTTCACTATTATTCTTTTTTCTGCTATTTATTGGGGCAAAAACAACACCTTTAAAGCTTGTTTTGCGCCTGATTTTCACTATTTTGTAAACTATTTTGAGCGCTTTTGAAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGTGTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGACCTATAACTCATATTTTTGTTATGGCTAAATAAATACACGTGCTCACTATTATTTTCCTTTTGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTTTAGGTACTTGATACTTG ]
[+] EMBL BM598692 [ ccgTTTGAAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGTGTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGGCCTATAACTTATATTTTTGTTATGGATAAATAAATACACGCGCTCACTATTATTTTCCTTTTGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTTTAGGTACTTGATACTTGTACGCAAGAATGTGTTTTTGCTAATTTTTGAAAATTGTACCACTTTTAGAGTACACAGTTATTTTACACGTTTGGTGTCACCTTATAGCTCAAACTGCACCACTCGCACTTTGTTGAAAACTGATTATAATAGCGGAGAAAGAAAAATGTAGGAAATATTTAAAATAGACATCCTAGCGAGGCAAACGTGTACAATATCCAAAATAGAAAACCCTTCAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAACACAGTGGCCTTAATCTCACTAACACAAACCAAGAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAGTATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAA]
consensusID : consensus_5239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1147 fasta sequence
[CAAGAATTGCCGAGGTTTAACAGTTGCTGGCAGAAAGCACCNATGTAGGAACATCATTCTACACATCAGCACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACANAATATTTTAGAGCAACGCGATCCAAGCAAGAGCANTTTCATTTGCGCTCAAGCAAATCATCAGTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATTACTAATAAACGATNNTAAACCATTACATCTAACAATCTAANTTATNAANNNACCTATTATAANCCATTGCATCAAAAGAACAATCAAGTGCTTACTNTGGAACCAAGGATTATGTTAGCAGGTCAAAACAAGCAAGGACACCTTAGTTCTACATTGGNTCCTCAAACTCCTTAATGGAAACCTTATTGNACACTCATCCANAACCNANATNTTCATTGCACAGGTANAACACAAGGNACCCAACGTTACAGTGGACCTCCAAGAAAAGAATCAACTCTACACAGGAAACAATACACCAGANGGTCTCACACTCACATGGGAAGNACTCTCATTGGAAAAGAGAGCAATTAATTAACACATTAAATTCCAAGCAACAANAGTNACCAACTAAAAACTTATGGTACACNNAGGCCCCACACGCGATCAATTCCACAATGGACTTGGTAAACCGNTTATGGCCCAGCACAACTCAATTACTTGCCNGCACGGGCATTGCTAAANCAANTTGGCTACANGCATNACAGCCGGTAAAGNCAATATGCANACATTCAAATTGGGATTATTGGACCCTTNTGGTACAACAGNACNAGGTCCATNTGGGCCCAAAGCTTGGGCCAGCCTNACGAAAATCAAANTGGCCCACAAATCAAACACCGAAAACAACNCGGTTAGACACTTCNACAANTCCACAACACGGGCAGAAAAGGGGCCAACCGTTCCCCCACCCGAGGATACCNACCTTCATCCCCTCTTCTGGGCGNAGCGGGACTAATCACTAAGAGCGTCGNCGACACACAAACCTATTACCCAACTGCGACCCACAATNAGACGATGGAAGCCCAGNNAAANAACTATCGGTCTACACCGAGANCAGGCNCTNTCCACACGCAGTATANCC]
[+] EMBL AL696431 [CAAGAATTGCCGAGGTTTAACAGTTGCTGGCAGAAAGCACCNATGTAGGAACATCATTCTACACATCAGCACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACANAATATTTTAGAGCAACGCGATCCAAGCAAGAGCANTTTCATTTGCGCTCAAGCAAATCATCAGTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATTACTAATAAACGATNNTAAACCATTACATCTAACAATCTAANTTATNAANNNACCTATTATAANCCATTGCATCAAAAGAACAATCAAGTGCTTACTNTGGAACCAAGGATTATGTTAGCAGGTCAAAACAAGCAAGGACACCTTAGTTCTACATTGGNTCCTCAAACTCCTTAATGGAAACCTTATTGNACACTCATCCANAACCNANATNTTCATTGCACAGGTANAACACAAGGNACCCAACGTTACAGTGGACCTCCAAGAAAAGAATCAACTCTACACAGGAAACAATACACCAGANGGTCTCACACTCACATGGGAAGNACTCTCATTGGAAAAGAGAGCAATTAATTAACACATTAAATTCCAAGCAACAANAGTNACCAACTAAAAACTTATGGTACACNNAGGCCCCACACGCGATCAATTCCACAATGGACTTGGTAAACCGNTTATGGCCCAGCACAACTCAATTACTTGCCNGCACGGGCATTGCTAAANCAANTTGGCTACANGCATNACAGCCGGTAAAGNCAATATGCANACATTCAAATTGGGATTATTGGACCCTTNTGGTACAACAGNACNAGGTCCATNTGGGCCCAAAGCTTGGGCCAGCCTNACGAAAATCAAANTGGCCCACAAATCAAACACCGAAAACAACNCGGTTAGACACTTCNACAANTCCACAACACGGGCAGAAAAGGGGCCAACCGTTCCCCCACCCGAGGATACCNACCTTCATCCCCTCTTCTGGGCGNAGCGGGACTAATCACTAAGAGCGTCGNCGACACACAAACCTATTACCCAACTGCGACCCACAATNAGACGATGGAAGCCCAGNNAAANAACTATCGGTCTACACCGAGANCAGGCNCTNTCCACACGCAGTATANCC]
consensusID : consensus_5239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[GGCCAAGAATCNCGCACGAGTGCAGAACAGTTGCTGGAGAAAGACAAAATGTAGGAAATATTCAAAATAGACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAATATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAACAAGATTATGTAGAGTTTAACAGCAGAACTAGTTATGATACTAAATCTTATGAACCTATGAACTATCAAACAATTTATGAAGTAAAAAGACCAAGTAAGTGACTCAGAAAGAATAAGTTAAAGAAAATAAAGAGTTAACGTAATGGAGATCATGAAGGAGCATATACAGTAATCAGAAAATAAACTNAAAATTGTAAGCCAACGATAATCAATGATGTTAGTTGCAGGAAATATATGCAGAGGATGTAAAACTGNTAGATAGCGTAGAATGCAACATAATGAGTATGAACTTGTGAAAGACNGATCATGCAAACTGAAGCTAGGATAACATGGCNNAGATTAGACNCGACAAACGGTNGGCAGTCGAGATCCAACAGGGAGAAANGGGCAAGTTCCAAGCAAGGTACATCTGATCNNTCATTGG]
[+] EMBL BX468235 [GGCCAAGAATCNCGCACGAGTGCAGAACAGTTGCTGGAGAAAGACAAAATGTAGGAAATATTCAAAATAGACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAATATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAACAAGATTATGTAGAGTTTAACAGCAGAACTAGTTATGATACTAAATCTTATGAACCTATGAACTATCAAACAATTTATGAAGTAAAAAGACCAAGTAAGTGACTCAGAAAGAATAAGTTAAAGAAAATAAAGAGTTAACGTAATGGAGATCATGAAGGAGCATATACAGTAATCAGAAAATAAACTNAAAATTGTAAGCCAACGATAATCAATGATGTTAGTTGCAGGAAATATATGCAGAGGATGTAAAACTGNTAGATAGCGTAGAATGCAACATAATGAGTATGAACTTGTGAAAGACNGATCATGCAAACTGAAGCTAGGATAACATGGCNNAGATTAGACNCGACAAACGGTNGGCAGTCGAGATCCAACAGGGAGAAANGGGCAAGTTCCAAGCAAGGTACATCTGATCNNTCATTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5239#1 ------CAAGAATTGC---CGAG-GTTTAACAGTTGCTGGCAGAAAGCACCNATGTAGGA 50
consensus_5239#2 ---GGCCAAGAATCNCGCACGAGTGCAGAACAGTTGCTGGAGAAAGACAA-AATGTAGGA 56
consensus_5239#0 CAACAACAACAATGTCAT-TAAGACATCCGTAGC-ATTGTTGAATGTCTCCCTTATTGTT 58
*** *** * ** ** ** * * * * *
consensus_5239#1 ACATCATTCTACACATCAGCACATCCTAGCGAGGCAAACATGTACAATATC--CAAAATA 108
consensus_5239#2 AA--TATTCAAAATAG----ACATCCTAGCGAGGCAAACATGTACAATATC--CAAAATA 108
consensus_5239#0 ATTTTATACTCCTTATAGTTATAGTATTTCTTCTACCTTTTTCTCGAGGTCGCTGTTGTC 118
* ** * * * * * * * * * ** *
consensus_5239#1 GAAAACCCTTTAGCACANAATATTTTAGAGCAACGCGATCCAAGCAAGAGCANTTTCATT 168
consensus_5239#2 GAAAACCCTTTAGCACAAA-TATTTTAGAGCAACGCGATCCAAG-AAGAGCAATTTA--T 164
consensus_5239#0 GGCGCTCCTCTGCAGCTCCAGGATCTCGATTTGC-TGATCCTCG--ACGTCCTTCTCATT 175
* *** * * * * ** * ***** * * * * * *
consensus_5239#1 TG-------CGCTCAAGCAAATCATCAG-TCTCAGAAGAAACAGAAAATACAGT---GGC 217
consensus_5239#2 TG-------CGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAATACAGT---GGC 214
consensus_5239#0 CGGGATGTACGGCCCGATATATTCGCCGTCCTCATCAAAATTTCTTAGTCCGTGCCAGGT 235
* ** * * ** * * **** * ** * * * **
consensus_5239#1 CTTAATCTCACTAACACAAACCAATAATGATT---ACTAATAAACGATNNTAAACCATTA 274
consensus_5239#2 CTTAATCTCACTAACACAAACCAATAATGAT----ACTAATAAACGATATAAAA--ATTA 268
consensus_5239#0 GCCCATCTTCTTTGCTCGGCTGATAGTTGGTTTAAGCTGTTGGGCGGCTTCCGGCTAT-- 293
**** * * * * ** * ** * ** **
consensus_5239#1 CATCTAACAATCTAANTTATNAANNNACCTATTATAANCCATTGCATCAAAAGAACAATC 334
consensus_5239#2 CATCTA-CAATCTAAATTATAAAAAA---TAT-ATAAAC-ATTG-ATCAAAAGAACAATC 321
consensus_5239#0 CGTTTGCTGGTGGGCGGCGTGCGTCTTGCTGT--TAGGCGTTTTGCTGTGGACGTCTCTT 351
* * * * * * * ** * ** * * * *
consensus_5239#1 AAGTGCTTACTNTGGAACCAAGGATTATGTTAGCAGGTCAAAACAAGCAAGGACACCTTA 394
consensus_5239#2 AAGTGCT-ACTT--GAAC--AAGATTATGTAG--AGTTTAACAGCAGAA--------CTA 366
consensus_5239#0 TGTAGGCAGCTT--GCAGTTGTCGTCTGATTAACACTTGATCGGCACTTTGTCTTTTATA 409
* ** * * * * * * * * **
consensus_5239#1 GTTCTACATTGGNTC-CTCAAACTCCTTAATGGAAACCTTATTGNACACTCATCCANAAC 453
consensus_5239#2 GTTAT------GATA-CTAAATCTTATGAACCTATGAACTATCAAACA---ATTTATGAA 416
consensus_5239#0 CCCGTTTGTCACTTCACTATTATTCTTTTTTCTGCTATTTATTGGGGCAAAAACAACACC 469
* * ** * * *** * *
consensus_5239#1 CNANATNTTCATTGCACAGGTANAACACAAGGNACCCAACGTTACAGTGGACCTCCAAGA 513
consensus_5239#2 GTAAAAAG--ACCAAGTAAGTGACTCAGAAAGAAT---AAGTTAAAGAAAAT-------- 463
consensus_5239#0 TTTAAAGCTTGTTTTGCGCCTGATTTTCACTATTTTGTAAACTATTTTGAGCGCTTTTG- 528
* * * * **
consensus_5239#1 AAAGAATCAACTCTACACAGGAAACAATACACCAGANGGTCTCACACTCACATG---GGA 570
consensus_5239#2 AAAGAGTTAACGTAAT---GGAGATCATGAAGGAGCATATACAGTAATCAGA-----AAA 515
consensus_5239#0 AAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGT 588
*** * * * ** * * **
consensus_5239#1 AGNACTCTCATTGGAAAAGAGAGCAATTAATTAACACATTAAATTCCAAGCAACAANAGT 630
consensus_5239#2 TAAACTNAAAATTGTAA-GCCAACGAT-AATCAATGATGTTAGTTGCAGGAAATATATGC 573
consensus_5239#0 GTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGAC 648
* * * * * ** ** * *
consensus_5239#1 NACCAACTAAAAACTTATGGTACACNNAGGCCCCACACGCGATCAATTCCACAATGGACT 690
consensus_5239#2 AGAGGATGTAAAACTGNTAGATAGCGTAGAATGCA-ACATAATGAGT------ATGAACT 626
consensus_5239#0 CTATAACTCATATTTTTGTTATGGCTAAATAAATACACGTGCTCACTATTATTTTCCTTT 708
* * * * * * * ** * * * * *
consensus_5239#1 TG---GTAAACCGNTTATGGCCCAGCACAACTCAATTACTTGCCNGCACGGGCATTGCTA 747
consensus_5239#2 TGT-GAAAGACNGATCATG--CAAACTGAAGCTAG------GATAACATGGCNNAGATTA 677
consensus_5239#0 TGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTT 768
** * * * *
consensus_5239#1 AANCAANTTGGCTACANGCA--TNACAGC-CGGTAAAGNCAATATGCANACATT----CA 800
consensus_5239#2 GACNCGACAAACGGTNGGCAGTCGAGATC-CAACAGGGAGAAANGGGCAAGTTC----CA 732
consensus_5239#0 TAGGTACTTGA-TACTTGTACGCAAGAATGTGTTTTTGCTAATTTTTGAAAATTGTACCA 827
* * * * * * ** * * **
consensus_5239#1 AATTGGGATTATTGGACCCTTN--TG-GTACAACAGNACNAGGTCCATNTGGGCCCAAAG 857
consensus_5239#2 AGCAAGGTACATCTGATCNNTCATTG-G-------------------------------- 759
consensus_5239#0 CTTTTAGAGTACACAGTTATTTTACACGTTTGGTGTCACCTTATAGCTCAAACTGCACCA 887
* * * *
consensus_5239#1 CTTGGGCCAGCCTNACGAA-AATCAAANTGGCCCACAAATCAAA-CACCGAAAACAACNC 915
consensus_5239#2 ------------------------------------------------------------
consensus_5239#0 CTCGCACTTTGTTGAAAACTGATTATAATAGCGGAGAAAGAAAAATGTAGGAAATATTTA 947
consensus_5239#1 GGTTAGACACTTCNACAANTCCACAACACGGGCAGAAAAGGGGCCAACCGTTCCCCCACC 975
consensus_5239#2 ------------------------------------------------------------
consensus_5239#0 AAATAGACATCCTAGCGAGGCA--AACGTGTACAATATCCAAAATAGAAAACCCTTCAGC 1005
consensus_5239#1 CGAGGATACCNACCTTCATCCCCTCTTCTGGGCGNAGCGGGACTAATCACTAAGAGCGTC 1035
consensus_5239#2 ------------------------------------------------------------
consensus_5239#0 ACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTA--TTGCGCTCAAGCAAATC 1063
consensus_5239#1 GNCGACACACAAACCTATTACCCAACTGCG-ACCCACAATNAGACGATGGAAGCCCAGNN 1094
consensus_5239#2 ------------------------------------------------------------
consensus_5239#0 ATCAGCTCTCAGAAGAAACAGAAAACACAGTGGCCTTAATCTCACTAACACAAACCAAGA 1123
consensus_5239#1 AAANAACTATCGGTCTACACCGAGANCAGGCNCTNTCCACACGCAGTATANCC------- 1147
consensus_5239#2 ------------------------------------------------------------
consensus_5239#0 ATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAGTATATAA 1183
consensus_5239#1 -----------------------------------
consensus_5239#2 -----------------------------------
consensus_5239#0 ACATTGATCAAAAGAACAATCAAGTGCTACTTGAA 1218
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||