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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1104 fasta sequence
[GCTCTAGCAGATCCCGAGGTTCGATCGGCGTGGCGAACAAGTCTATCAGTGAATTATGCGAACCACTTCTGCTCTGTTGTTGTTCGGTGCAAAGTTTACCATAAACACCGCATTANATTACAAGCGAAACCGATGAAGATAATTTCGGACATTCGTGGTGATAACTGGGAAAGTGTTGTACAGTGGAAAGGNCCGAGAAGGCAAAGGCCCACCCCGTGGGTGGTTGTTACGGGTNTCCAAGGCTGGGTATGGACATTCTCCGGCTGTTGTAACAGGCACGGCACGAAGTGCAATCGGNACAGGTTGACCTTCATCAACAGTGTNCTTTATTGGGGCAACCTGGATTTNGGCTGAAAAAAACTCCCANCGATNNNNTCCCGGTCCCCAGNGAGCGGGATTTTCTGGGACACAGGTAGGGAATTTCCGGAAGCCCGGGGCACAAAAGATATATCTGGGGNCCACACATTNGTTTAGTTTTTCCAAAACCACCNTNGAGGGCCACATATTAAACCCGCAACGACGTATTTCCGGNGGGAAACGCAAGTTGCAAATTCAANATTCCGATATGACGGGCAAGAACCGGGGTAGTGAAAAAGGNCGCCGAATGACTAAAACACCCTGGTGGTTTGGATACNTCANACGCCANAGCNGCCGTAAAGAACACNTAATGCACCTGGAAATAGGGTATAAGCAACAAATTAAAAANGCACANCGGAGNGAGCACCATTANTCGGGNNCCATATCNCTATAAACGACATTCCGGAAGGATTTGCCCCNGAGCGAANCAGGAATTGAATTTGCCCGGCACANGGAACCAAACNAACAGGGGNNGACGNGAGTACCCCTCAAGNAGAAAACGCGAGGTTTGNGCCCCNATATNCANGAAAGCCAACGGAAGAGGAAAGAGCATACANGGGAACACANCCCGNATGAAANATATCACCGAGAACGATTGCAAANTGGNCACACCCGNNTNGCAATATACANAGCTNATNCTTCACCATGGNGCCAGACCCACAANTAGCNGGGTAATTCAAAGCACGGCATAACAATNGTCAAAAACCANNNGGCGGGCNAAANCTATCNCCCGCCAGGNANTGTACA]
[+] EMBL AL696465 [GCTCTAGCAGATCCCGAGGTTCGATCGGCGTGGCGAACAAGTCTATCAGTGAATTATGCGAACCACTTCTGCTCTGTTGTTGTTCGGTGCAAAGTTTACCATAAACACCGCATTANATTACAAGCGAAACCGATGAAGATAATTTCGGACATTCGTGGTGATAACTGGGAAAGTGTTGTACAGTGGAAAGGNCCGAGAAGGCAAAGGCCCACCCCGTGGGTGGTTGTTACGGGTNTCCAAGGCTGGGTATGGACATTCTCCGGCTGTTGTAACAGGCACGGCACGAAGTGCAATCGGNACAGGTTGACCTTCATCAACAGTGTNCTTTATTGGGGCAACCTGGATTTNGGCTGAAAAAAACTCCCANCGATNNNNTCCCGGTCCCCAGNGAGCGGGATTTTCTGGGACACAGGTAGGGAATTTCCGGAAGCCCGGGGCACAAAAGATATATCTGGGGNCCACACATTNGTTTAGTTTTTCCAAAACCACCNTNGAGGGCCACATATTAAACCCGCAACGACGTATTTCCGGNGGGAAACGCAAGTTGCAAATTCAANATTCCGATATGACGGGCAAGAACCGGGGTAGTGAAAAAGGNCGCCGAATGACTAAAACACCCTGGTGGTTTGGATACNTCANACGCCANAGCNGCCGTAAAGAACACNTAATGCACCTGGAAATAGGGTATAAGCAACAAATTAAAAANGCACANCGGAGNGAGCACCATTANTCGGGNNCCATATCNCTATAAACGACATTCCGGAAGGATTTGCCCCNGAGCGAANCAGGAATTGAATTTGCCCGGCACANGGAACCAAACNAACAGGGGNNGACGNGAGTACCCCTCAAGNAGAAAACGCGAGGTTTGNGCCCCNATATNCANGAAAGCCAACGGAAGAGGAAAGAGCATACANGGGAACACANCCCGNATGAAANATATCACCGAGAACGATTGCAAANTGGNCACACCCGNNTNGCAATATACANAGCTNATNCTTCACCATGGNGCCAGACCCACAANTAGCNGGGTAATTCAAAGCACGGCATAACAATNGTCAAAAACCANNNGGCGGGCNAAANCTATCNCCCGCCAGGNANTGTACA]
consensusID : consensus_5240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[ATTCGTGGTGATAACTGGAAAACGTGTTGTACAGTGAAAGGTCGAGGAGCAAGCCACCCGTGGTGTGTTCGGTTCAGTGGTTGATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGAATAAAAAATGTCTTTTGCACTGTTGCGAAGCCACGGCCGTCCGGCGTTGGCAGTGATCGAGCGGCAAGTTCGGGCACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGTGAAGCCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCCTTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGCCGCCCCAGAACGTGCCTACAACAGTGACTCGGACTCGGACTCGGATGATGAGCGTGATAATACTCCGCGCCAGCGTCAGCGCAAGGAACGGGGCAACTCCGAGTTCTGGCGACGCAAGATGCGCACCCTGCACGGTGTGCTGGACGTCAACAAGGACGGTGTCATCTCGTACGACGATTTTATGCTGCTGACGGAAAAGTTTGCCTCCCTGGGCCATCTCGATGCGAAGGCAAAGAACGAGTTCCGCGACATTATGAGAACCACCTGGGAGCAACAATGGGGTGAAATTACGCCCTACAATCTAGTCACGGTGGAACAGTACCTAACCGAGATGCACCATGTGGTGAATGATAAGGATCTCNAGAAGAAGGTGCATCGCTTTTTGNCCTACCTGTACAAGGNCGTCGACAAGGATCGCTCGGGATCGATCTCGCTGAACGAGTTCNAACTATTCTTCCGCTGTC]
[+] EMBL BX621227 [ATTCGTGGTGATAACTGGAAAACGTGTTGTACAGTGAAAGGTCGAGGAGCAAGCCACCCGTGGTGTGTTCGGTTCAGTGGTTGATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGAATAAAAAATGTCTTTTGCACTGTTGCGAAGCCACGGCCGTCCGGCGTTGGCAGTGATCGAGCGGCAAGTTCGGGCACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGTGAAGCCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCCTTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGCCGCCCCAGAACGTGCCTACAACAGTGACTCGGACTCGGACTCGGATGATGAGCGTGATAATACTCCGCGCCAGCGTCAGCGCAAGGAACGGGGCAACTCCGAGTTCTGGCGACGCAAGATGCGCACCCTGCACGGTGTGCTGGACGTCAACAAGGACGGTGTCATCTCGTACGACGATTTTATGCTGCTGACGGAAAAGTTTGCCTCCCTGGGCCATCTCGATGCGAAGGCAAAGAACGAGTTCCGCGACATTATGAGAACCACCTGGGAGCAACAATGGGGTGAAATTACGCCCTACAATCTAGTCACGGTGGAACAGTACCTAACCGAGATGCACCATGTGGTGAATGATAAGGATCTCNAGAAGAAGGTGCATCGCTTTTTGNCCTACCTGTACAAGGNCGTCGACAAGGATCGCTCGGGATCGATCTCGCTGAACGAGTTCNAACTATTCTTCCGCTGTC]
[+] EMBL BX621981 [ GCAAGCCACCCGTGGTGTGTTCGGTTCAGTGGTTGATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGAATAAAAAATGTCTTTTGCACTGTTGCGAAGCCACGGCCGTCCGGCGTTGGCAGTGATCGAGCGGCAAGTTCGGGCACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGTGAAGCCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCCTTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGCCGCCCCAGAACGTGCCTACAACAGTGACTCGGACTCGGACTCGGATGATGAGCGTGATAATACTCCGCGCCAGCGTCAGCGCAAGGAACGGGGCAACTCCGAGTTCTGGCGACGCAAGATGCGCACCCTGCACGGTGTGCTGGACGTCAACAAGGACGGTGTCATCTCGTACGACGATTTTATGCTGCTGACGGAAAAGTTTGCCTCCCTGGGCCATCTCGATGCGAAG ]
consensusID : consensus_5240#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[AGAATCCGGCACGATGGGTGAATTAAGCGAACCACTTCTGCTCTGTTGTTGTTCGGTGCAAAAGTTTACCATAAACACCGCCATTACATTACAAGCGAAACCGACTGAAGATAATTTCGGCACATTCGTGGTGATAACTGGAAAACGTGTTGTACAGTGAAAGGTCGAGGAGCAAGCCACCCGTGGTGTGTTCGGTTCAGTGGTTGATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGAATAAAAAATGTCTTTTGCACTGTTGCGAAGCCACGGCCGTCCGGCGTTGGCAGTGATCGAGCGGCAAGTTCGGGCACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGTGAAGCCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCCTTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGGCGGCCCAGAACGTGCCTACAACAAGTGACTCGGACTCGGACTCGGATGATGAGCGTGATGAATAAGCCCGAGCTGGTACGATCACTGAGCACGGAGGCGTGTTCCGTGTACTTCCCGGGTANGTCCAGGGGACTAACTGTGCGCCTGATCG]
[+] EMBL BX468818 [AGAATCCGGCACGATGGGTGAATTAAGCGAACCACTTCTGCTCTGTTGTTGTTCGGTGCAAAAGTTTACCATAAACACCGCCATTACATTACAAGCGAAACCGACTGAAGATAATTTCGGCACATTCGTGGTGATAACTGGAAAACGTGTTGTACAGTGAAAGGTCGAGGAGCAAGCCACCCGTGGTGTGTTCGGTTCAGTGGTTGATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGAATAAAAAATGTCTTTTGCACTGTTGCGAAGCCACGGCCGTCCGGCGTTGGCAGTGATCGAGCGGCAAGTTCGGGCACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGTGAAGCCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCCTTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGGCGGCCCAGAACGTGCCTACAACAAGTGACTCGGACTCGGACTCGGATGATGAGCGTGATGAATAAGCCCGAGCTGGTACGATCACTGAGCACGGAGGCGTGTTCCGTGTACTTCCCGGGTANGTCCAGGGGACTAACTGTGCGCCTGATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5240#1 ------------------------------------------------------------
consensus_5240#2 -------------------------------AGAATCCGGCACGATGGGTGAATTAAGCG 29
consensus_5240#0 GCTCTAGCAGATCCCGAGGTTCGATCGGCGTGGCGAACAAGTCTATCAGTGAATTATGCG 60
consensus_5240#1 ------------------------------------------------------------
consensus_5240#2 AACCACTTCTGCTCTGTTGTTGTTCGGTGCAAAAGTTTACCATAAACACCGCCATTACAT 89
consensus_5240#0 AACCACTTCTGCTCTGTTGTTGTTCGGTGCAAA-GTTTACCATAAACACCGC-ATTANAT 118
consensus_5240#1 ----------------------------------ATTCGTGGTGATAACTGGAAAACGTG 26
consensus_5240#2 TACAAGCGAAACCGACTGAAGATAATTTCGGCACATTCGTGGTGATAACTGGAAAACGTG 149
consensus_5240#0 TACAAGCGAAACCGA-TGAAGATAATTTCGG-ACATTCGTGGTGATAACTGGGAAA-GTG 175
****************** *** ***
consensus_5240#1 TTGTACAGTGAAA--GGTCGAGGAGCAAGCCACCCGTGGTGTGTTCGGTT-CAGTGGTTG 83
consensus_5240#2 TTGTACAGTGAAA--GGTCGAGGAGCAAGCCACCCGTGGTGTGTTCGGTT-CAGTGGTTG 206
consensus_5240#0 TTGTACAGTGGAAAGGNCCGAGAAGGCAAAGGCCCACCCCGTGGGTGGTTGTTACGGGTN 235
********** ** * **** ** * *** *** **** ** *
consensus_5240#1 ATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGA-ATAAAAAATGTCTTTTGCACTGTTGCG 142
consensus_5240#2 ATTTCGTGTGAAGCAAGAGAGGAAAGAAGTGA-ATAAAAAATGTCTTTTGCACTGTTGCG 265
consensus_5240#0 TCCAAGGCTGGGTATGGACATTCTCCGGCTGTTGTAACAGGCACGGCACGAAGTGCAATC 295
* ** ** * ** *** * * * **
consensus_5240#1 AAGCCACGGCCGTCCGGCGTTGGCAGTGATC-------GAGCGGC--AAGTTCGGGC--- 190
consensus_5240#2 AAGCCACGGCCGTCCGGCGTTGGCAGTGATC-------GAGCGGC--AAGTTCGGGC--- 313
consensus_5240#0 GGNACA-GGTTGACCTTCATCAACAGTGTNCTTTATTGGGGCAACCTGGATTTNGGCTGA 354
** ** * ** * * ***** * * ** * ** ***
consensus_5240#1 ACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGT 250
consensus_5240#2 ACTGTCTTCCACCCTGGCCATTACCGACATTTCGGCAACATCATCATCGTCAGCAGCGGT 373
consensus_5240#0 AAAAAACTCCCANCGATNNNNTCCCGGTCCCCAGNGAGCGGGATTTTCTGGGACACAGGT 414
* *** * * *** * * * ** ** ** ***
consensus_5240#1 GAAG-----CCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCC 305
consensus_5240#2 GAAG-----CCGACAACCGGTGAAAACAACCGAAACTACCTGAAGAACAATAAGCCGTCC 428
consensus_5240#0 AGGGAATTTCCGGAAGCCCG-GGGCACAAAAGATA-TATCTGGGGNCCACACATTNGTTT 472
* *** * ** * * **** ** * ** *** * ** * **
consensus_5240#1 TTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGCCGCCCCAGAACGTGCCTAC 365
consensus_5240#2 TTCGTCTCTACATCGGTCCGCAAGTATTCGAAGAAAACGGGCGGCCCAGAACGTGCCTAC 488
consensus_5240#0 AGTTTTTCCAAAACCACCNTNGAGGGCC---ACATATTAAACCCGCAACGACGTATTTCC 529
* ** * * * * ** * * * * * * **** * *
consensus_5240#1 AACA-GTGACTCGGACT-CGGACTCGGATGATGAGCGTGATAA--TACT-CCGCGCCAGC 420
consensus_5240#2 AACAAGTGACTCGGACT-CGGACTCGGATGATGAGCGTGATGAATAAGC-CCGAGCTGGT 546
consensus_5240#0 GGNGGGAAACGCAAGTTGCAAATTCAANATTCCGATATGACGGGCAAGAACCGGGGTAGT 589
* ** * * * * ** *** * *** * *
consensus_5240#1 GTCA----GCGCAAGGA-ACGG-GGCA-ACT--CCGAGTTCTGGCGACGCAAGATGCGCA 471
consensus_5240#2 ACGA----TCACTGAGC-ACGGAGGCGTGTT--CCGTGTACTTCCCGGGTANGTCCAGGG 599
consensus_5240#0 GAAAAAGGNCGCCGAATGACTAAAACACCCTGGTGGTTTGGATACNTCANACGCCANAGC 649
* * * ** * * * * * * *
consensus_5240#1 CCCTGCACGGTGTGCTGGACGTCAACAAGGACGGTGTCATCTCGTACGACGATTTTATGC 531
consensus_5240#2 GACTA-ACTGTGCGCCTGATCG-------------------------------------- 620
consensus_5240#0 NGCCGTAAAGAACACNTAATGCACCTGGAAATAGGGTATAAGCAACAAATTAAAAANGCA 709
* * * * *
consensus_5240#1 TGCTGACGGAAAAGTTTGCCTCCCTGGGCCATCTCGATGCGAAGGC-------AAAGAAC 584
consensus_5240#2 ------------------------------------------------------------
consensus_5240#0 CANCGGAGNGAGCACCATTANTCGGGNNCCATATCNCTATAAACGACATTCCGGAAGGAT 769
consensus_5240#1 GAGTTCCGCGACATTATGAGAACCACCTGGGAGCAACAATGGGGTGAAATTACGCCC--- 641
consensus_5240#2 ------------------------------------------------------------
consensus_5240#0 TTGCCCCNGAGCGAANCAGGAATTGAATTTGCCCGGCACANGGAACCAAACNAACAGGGG 829
consensus_5240#1 TACAATCTAGTCACGGTGGAACAGTACCTAACCGAGATGCACCATGTGGTGAATGATAAG 701
consensus_5240#2 ------------------------------------------------------------
consensus_5240#0 NNGACGNGAGTACCCCTCAAGNAGAAAACGCGAGGTTTGNGCCCCNATATNCANGAAAGC 889
consensus_5240#1 GATCTCNAGAAGAAGGTGCATCGCTTTTTGNCCTACCTGTAC-AAGGNCGTCGACAAGGA 760
consensus_5240#2 ------------------------------------------------------------
consensus_5240#0 CAACGGAAGAGGAAAGAGCATACANGGGAACACANCCCGNATGAAANATATCACCGAGAA 949
consensus_5240#1 TCGCTCGGGATCGATCTCGCTGAACGAGTTCNAACTATTCTTCCGCTGTC---------- 810
consensus_5240#2 ------------------------------------------------------------
consensus_5240#0 CGATTGCAAANTGGNCACACCCGNNTNGCAATATACANAGCTNATNCTTCACCATGGNGC 1009
consensus_5240#1 ------------------------------------------------------------
consensus_5240#2 ------------------------------------------------------------
consensus_5240#0 CAGACCCACAANTAGCNGGGTAATTCAAAGCACGGCATAACAATNGTCAAAAACCANNNG 1069
consensus_5240#1 -----------------------------------
consensus_5240#2 -----------------------------------
consensus_5240#0 GCGGGCNAAANCTATCNCCCGCCAGGNANTGTACA 1104
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||