|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1377 fasta sequence
[TTGTTAGGCAGAAGACTGACGGGAACCGAGAAATTTGGAGGAGAGATTGCTTAAGTCTGCGTCGGGTACGACCATGATAAGCGAGCCGAGTACGGCCGGCACGAGCGGGAAGGATGCATGCCCGGAGGGAGATGTGGTACTTGAGACGCCTCGGATTCTCACCCGACGGGGATCGACCGAGAGTGGATTCTTTTCCTGCCTCAACGAGGACTTTGGTACGTACAAATCGTCACCTTGCTGCTGTCTGGATCAGATTACACACTTCGAATCGACGGACCGGCTGTCGATGTGCAGATGCATCTACGCGGGTGCGGCAACGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAATCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAAAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTTGTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGCGGTGGCGGCGGAACAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACCATCGCCCTAGTGCGGCCTATGCAGCGGGAACGAACGCATCGTCCTGTGCTGGGATGGGTGCCACGGCCACGGGCGGTGCTGCACCAACGGCTTCCACCAATACAGCAACACCAAATGGAGCGGTCGTGGACAGTGGGCGACGGCATTCTTCCACTTCCGGGGCCGTAACTTCCGCGGCAGCCAATGCAAAGCTGTCTCAGGCTGAACTAAAGCAACGCTTCGAGTACGAAGCGTTCTGTCTGGAGCTGGAGCGAAAGCAGCAAGCTTCCGTCACAGTCCCGAACGCTCCCCAAATACGGTTAAACAACATCTGCGAGGGTAACGTTCGCTCAAAACTGCAACTGTTCGATAAGCAGAGACAGCAGAGCAACGCTGCGGCGGCTG]
[+] EMBL BX628694 [TTGTTAGGCAGAAGACTGACGGGAACCGAGAAATTTGGAGGAGAGATTGCTTAAGTCTGCGTCGGGTACGACCATGATAAGCGAGCCGAGTACGGCCGGCACGAGCGGGAAGGATGCATGCCCGGAGGGAGATGTGGTACTTGAGACGCCTCGGATTCTCACCCGACGGGGATCGACCGAGAGTGGATTCTTTTCCTGCCTCAACGAGGACTTTGGTACGTACAAATCGTCACCTTGCTGCTGTCTGGATCAGATTACACACTTCGAATCGACGGACCGGCTGTCGATGTGCAGATGCATCTACGCGGGTGCGGCAACGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAATCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAAAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTTGTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAA ]
[+] EMBL BM575840 [ ccgGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGC TGTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGCGGTGGCGGCGGAACAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACCATCGCCCTAGTGCGGCCTATGCAGCGGGAACGAACGCATCGTCCTGTGCTGGGATGGGTGCCACGGCCACGGGCGGTGCTGCACCAACGGCTTCCACCAATACAGCAACACCAAATGGAGCGGTCGTGGACAGTGGGCGACGGCATTCTTCCACTTCCGGGGCCGTAACTTCCGCGGCAGCCAATGCAAAGCTGTCTCAGGCTGAACTAAAGCAACGCTTCGAGTACGAAGCGTTCTGTCTGGAGCTGGAGCGAAAGCAGCAAGCTTCCGTCACAGTCCCGAACGCTCCCCAAATACGGTTAAACAACATCTGCGAGGGTAACGTTCGCTCAAAACTGCAACTGTTCGATAAGCAGAGACAGCAGAGCAACGCTGCGGCGGCTG]
consensusID : consensus_5244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGCGGACGCGTGGGGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAACCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAGAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTGTGGGATGATCGCTCGTGCACGACCATGCCAAACACTCGCTCTGCCCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGGCGGTGGCGGTGGAACAAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACC]
[+] EMBL BM636997 [CCGCGGACGCGTGGGGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAACCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAGAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTGTGGGATGATCGCTCGTGCACGACCATGCCAAACACTCGCTCTGCCCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGGCGGTGGCGGTGGAACAAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACC]
consensusID : consensus_5244#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[TGGCTCAGCCAGAATTGCACGAGGTTACTGCCGACGGACTGACCGGACTGATGTCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGACAACGGACCACATTGCTGAGGCAATTGTGGACATCGATGCCCGGTCGAATTGACCAATTGGGGTCTTGAATCAAATTCGGTTTGGGCGCTCGGATTTCCGAAATAAGGCAGCATGATTTCCAAAAAAGAAAACCCAAGGTTTCAAGGCCGAAAAACCCAATGCCTTTGCTTGTTAACTTTGCCACACGAAACCCTGTTTCCCTTCCGGTTCGGAATTATTATCAACCTGGACCAAGGCTTCCNGNGGAACGCGAATTATCAAGGGCCGAAGGCCCTTNGAGGCCCNGGGGTTCCGGGGAACCTTCCACGGCCTTGCCTTGGTTGGAGGGGAACTTTGGATTCCGGCTCCGGGTTGGCCAAACCGAAANTTTAATTTGGCGCAAAGAACGAGCTTCCN]
[+] EMBL AL696601 [TGGCTCAGCCAGAATTGCACGAGGTTACTGCCGACGGACTGACCGGACTGATGTCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGACAACGGACCACATTGCTGAGGCAATTGTGGACATCGATGCCCGGTCGAATTGACCAATTGGGGTCTTGAATCAAATTCGGTTTGGGCGCTCGGATTTCCGAAATAAGGCAGCATGATTTCCAAAAAAGAAAACCCAAGGTTTCAAGGCCGAAAAACCCAATGCCTTTGCTTGTTAACTTTGCCACACGAAACCCTGTTTCCCTTCCGGTTCGGAATTATTATCAACCTGGACCAAGGCTTCCNGNGGAACGCGAATTATCAAGGGCCGAAGGCCCTTNGAGGCCCNGGGGTTCCGGGGAACCTTCCACGGCCTTGCCTTGGTTGGAGGGGAACTTTGGATTCCGGCTCCGGGTTGGCCAAACCGAAANTTTAATTTGGCGCAAAGAACGAGCTTCCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5244#0 TTGTTAGGCAGAAGACTGACGGGAACCGAGAAATTTGGAGGAGAGATTGCTTAAGTCTGC 60
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 GTCGGGTACGACCATGATAAGCGAGCCGAGTACGGCCGGCACGAGCGGGAAGGATGCATG 120
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 CCCGGAGGGAGATGTGGTACTTGAGACGCCTCGGATTCTCACCCGACGGGGATCGACCGA 180
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 GAGTGGATTCTTTTCCTGCCTCAACGAGGACTTTGGTACGTACAAATCGTCACCTTGCTG 240
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 CTGTCTGGATCAGATTACACACTTCGAATCGACGGACCGGCTGTCGATGTGCAGATGCAT 300
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 CTACGCGGGTGCGGCAACGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAAC 360
consensus_5244#1 --CCGCGGACGCG-TGGGGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAAC 57
consensus_5244#2 ---------------------------------TGGCTCAGCCA--GAATTGCACGAGGT 25
** *** * * * * *
consensus_5244#0 GCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCAT 420
consensus_5244#1 GCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCAT 117
consensus_5244#2 TACTGCCGACGGACTGACCGGACTGATGTC-AACCAGACATTGAACGACAGCTCAAGCAT 84
**************************** *****************************
consensus_5244#0 ACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGA 480
consensus_5244#1 ACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGA 177
consensus_5244#2 ACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGA 144
************************************************************
consensus_5244#0 GCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCA 540
consensus_5244#1 GCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCA 237
consensus_5244#2 GCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCA 204
************************************************************
consensus_5244#0 CCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGA- 599
consensus_5244#1 CCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGA- 296
consensus_5244#2 CCAGCTG-ACAACGGACCACATTGCTGA--GGCAATTGTGGACATCGATGCCCGGTCGAA 261
******* ***** * * ** ** * * ***********************
consensus_5244#0 TTGAC--AT--GGGTCT--GATCAA--TCGGTT--GGCGCTCGA--TTCCGAAATAAG-C 646
consensus_5244#1 TTGAC--AT--GGGTCT--GATCAA--CCGGTT--GGCGCTCGA--TTCCGAAATAAG-C 343
consensus_5244#2 TTGACCAATTGGGGTCTTGAATCAAATTCGGTTTGGGCGCTCGGATTTCCGAAATAAGGC 321
***** ** ****** ***** ***** ******** ************ *
consensus_5244#0 AGCATGATTCAAAAAAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCG 706
consensus_5244#1 AGCATGATTCAAAAGAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCG 403
consensus_5244#2 AGCATGATTTCCAAAAAAGAAAAC-CCAA--GGTTTCAAGGCCGAAAAACCCAATGC-CT 377
********* ** ** * * **** * * * * * ** * ** * * *
consensus_5244#0 TCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTT 766
consensus_5244#1 TCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCT- 462
consensus_5244#2 TTGCTTGTTAACTTTGCCACACGAAAC-CCTGTTTCCCTTCCGGTTCGGAATTATT---- 432
* * ** * * * * * * * * ** ********** * *
consensus_5244#0 GTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGAT 826
consensus_5244#1 GTGGGATGATCGCTCGTGCACGACCATGCCAAACACTCGCTCTGCCCAGATCGCCAAGAT 522
consensus_5244#2 -----ATCAAC-CTGGACCAAGGCTTCCNGNGGAACGCGAATTATCAAGGGCCGAAGGCC 486
** * * ** * ** * * ** ** * ** * * *
consensus_5244#0 CGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCT 886
consensus_5244#1 CGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCT 582
consensus_5244#2 CTTNGAGGCCCNGGGGTTCCGGGG---AACCTTCCACGGCCTTGCCTTGGTTGGAGGGGA 543
* * *** * * * *** *** *** * * * * ** *
consensus_5244#0 ACAGCTGGGCGCATCTGCCTCCGGGGGCCACTG-CGGTGGCGGCGGAACA-GGCAGCTCC 944
consensus_5244#1 ACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGGCGGTGGCGGTGGAACAAGGCAGCTCC 642
consensus_5244#2 ACT-TTGGAT---TCCGGCTCCGGG-----TTGGCCAAACCGAAANTTTAATTTGGCGCA 594
** *** ** * ******* ** * ** * ** *
consensus_5244#0 GTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACCATCGCCCTAGT 1004
consensus_5244#1 GTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACC----------- 691
consensus_5244#2 AAGAACGAGCTTCCN--------------------------------------------- 609
* * ** *
consensus_5244#0 GCGGCCTATGCAGCGGGAACGAACGCATCGTCCTGTGCTGGGATGGGTGCCACGGCCACG 1064
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 GGCGGTGCTGCACCAACGGCTTCCACCAATACAGCAACACCAAATGGAGCGGTCGTGGAC 1124
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 AGTGGGCGACGGCATTCTTCCACTTCCGGGGCCGTAACTTCCGCGGCAGCCAATGCAAAG 1184
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 CTGTCTCAGGCTGAACTAAAGCAACGCTTCGAGTACGAAGCGTTCTGTCTGGAGCTGGAG 1244
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 CGAAAGCAGCAAGCTTCCGTCACAGTCCCGAACGCTCCCCAAATACGGTTAAACAACATC 1304
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 TGCGAGGGTAACGTTCGCTCAAAACTGCAACTGTTCGATAAGCAGAGACAGCAGAGCAAC 1364
consensus_5244#1 ------------------------------------------------------------
consensus_5244#2 ------------------------------------------------------------
consensus_5244#0 GCTGCGGCGGCTG 1377
consensus_5244#1 -------------
consensus_5244#2 -------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||