cluster # 5245

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Anopheles gambiae
cluster # 5245 cluster # 5245 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5245#0 length = 696 sequences # 1

consensus_5245#1 length = 683 sequences # 2
consensus_5245#2 length = 610 sequences # 1

consensusID : consensus_5245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCACCTACGACTACTCCGCACACATCATGGACCTGGGACCGACCGGTTTCGTCGACGTCGATGTAGCGACGATGACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTCTACATCTGGATGCAGGACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGCGGTAACATTCTCGTCGACTGGATGGCAACATTTTCGTCAACATCATCACGACG]

[+] EMBL AL929870             [ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCACCTACGACTACTCCGCACACATCATGGACCTGGGACCGACCGGTTTCGTCGACGTCGATGTAGCGACGATGACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTCTACATCTGGATGCAGGACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGCGGTAACATTCTCGTCGACTGGATGGCAACATTTTCGTCAACATCATCACGACG]




>consensus_5245#0
ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTGATTC
AAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTG
GCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGAT
GAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATG
ATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTC
GAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAAC
GGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGAC
CGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCACCTACGACT
ACTCCGCACACATCATGGACCTGGGACCGACCGGTTTCGTCGACGTCGATGTAGCGACGA
TGACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTCTACATCTGGATGCAG
GACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGCGGTAACATTCTCGTCGA
CTGGATGGCAACATTTTCGTCAACATCATCACGACG

consensusID : consensus_5245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence

                              [AAACTCCCCCNAGGTTAGTTTGTGTTTGTGTGTGTGCGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTA-CATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGGCAATGTGTACTGGTAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGAATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGAGGGCTGACGAAAAATTTGTATGGTTGTTTGAACCAGGCATCTAGCTCGGAAATAGTATGTGCACATGTATGTTAAATGCGTAT]

[+] EMBL AL932301             [AAACTCCCCCNAGGTTAGTTTGTGTTTGTGTGTGTGCGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTA CATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGGCAATGTGTACTGGTAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGAATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGAGGGCTGACGAAAAATTTGTATGGTTGTTTGAA                                                   ]
[+] EMBL BX626638             [                                     GTTGATTC AATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGG AATGTGTACTGGTAGAATGTGCAACG AGGAAGAATT GTTCACCAGAATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGAGGGCTGACGAAAAATTTGTATGGTTGTTTGAACCAGGCATCTAGCTCGGAAATAGTATGTGCACATGTATGTTAAATGCGTAT]




>consensus_5245#1
AAACTCCCCCNAGGTTAGTTTGTGTTTGTGTGTGTGCGTTGATTCAAATTGAACTTGAAG
GAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATC
TGCGCCCTACATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACA
CCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGT
GGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATC
GCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCA
TTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCG
TCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGGCAATGTGTACTGG
TAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGAATTTGGTTAACGTCTGGGTTGGTA
GTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGA
GGGCTGACGAAAAATTTGTATGGTTGTTTGAACCAGGCATCTAGCTCGGAAATAGTATGT
GCACATGTATGTTAAATGCGTAT

consensusID : consensus_5245#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTGTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTTGAAGATGAAGTGCAACGCAAAAACCGCTAATGTCGGGCGGAAAACCATTGAAAACAAATTTACAATTCCGGAACCGGTTGGGGTTGGATTGGAATTTCCAAAGTTTGGGAACCCGGTTGGGCATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGCCTGGCCCCNGGAATTGGTTGGGTTCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGCCCCAAAATCCCTGGAATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAACTTTAAACCCAAAACGAGGCCGGATGGTTTACCCAAGAAGCCAATTTCCANACCAAGGGTTGGTTGGGGGCCCCGGGCGAAAATNGGCGCAAACACATTGGCCCGGGAATTCGCAATTTGGCCAACCTTTAACCGGGAAGGCCGG]

[+] EMBL AL696606             [AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTGTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTTGAAGATGAAGTGCAACGCAAAAACCGCTAATGTCGGGCGGAAAACCATTGAAAACAAATTTACAATTCCGGAACCGGTTGGGGTTGGATTGGAATTTCCAAAGTTTGGGAACCCGGTTGGGCATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGCCTGGCCCCNGGAATTGGTTGGGTTCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGCCCCAAAATCCCTGGAATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAACTTTAAACCCAAAACGAGGCCGGATGGTTTACCCAAGAAGCCAATTTCCANACCAAGGGTTGGTTGGGGGCCCCGGGCGAAAATNGGCGCAAACACATTGGCCCGGGAATTCGCAATTTGGCCAACCTTTAACCGGGAAGGCCGG]




>consensus_5245#2
AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTGTGTTTGTGTGTGTGCTGTTGA
TTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTG
GTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTTG
AAGATGAAGTGCAACGCAAAAACCGCTAATGTCGGGCGGAAAACCATTGAAAACAAATTT
ACAATTCCGGAACCGGTTGGGGTTGGATTGGAATTTCCAAAGTTTGGGAACCCGGTTGGG
CATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGCCTGGCCCCNGGAA
TTGGTTGGGTTCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGCCCCAAAATCCCTGG
AATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAACTTTAAACCCAAAAC
GAGGCCGGATGGTTTACCCAAGAAGCCAATTTCCANACCAAGGGTTGGTTGGGGGCCCCG
GGCGAAAATNGGCGCAAACACATTGGCCCGGGAATTCGCAATTTGGCCAACCTTTAACCG
GGAAGGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5245#0      ----ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTG 56
consensus_5245#1      -----------------AAACTCCCCCNAGGTTAGTTTG-TGTTTGTGTGTGTGC-GTTG 41
consensus_5245#2      AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTG-TGTTTGTGTGTGTGCTGTTG 59
                                                *   **  ***** *************** ****

consensus_5245#0      ATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACT 116
consensus_5245#1      ATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACT 101
consensus_5245#2      ATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACT 119
                      ************************************************************

consensus_5245#0      GGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAG--ACGGAGGTT 174
consensus_5245#1      GGTGGCTTTCGGGCTCATCTGCGCCCTA-CATCGGTTGGTGGTTACGAG--ACGGAGGTT 158
consensus_5245#2      GGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTT 179
                      **************************** ********************  *********

consensus_5245#0      GAAGATGAAGTGCAACGCAACA-CCGCTA-TGTCGGCGAACATGAACAACTACATCGACG 232
consensus_5245#1      GAAGATGAAGTGCAACGCAACA-CCGCTA-TGTCGGCGAACATGAACAACTACATCGACG 216
consensus_5245#2      GAAGATGAAGTGCAACGCAAAAACCGCTAATGTCGG-GCGGAAAACCATTGAAAACAAAT 238
                      ******************** * ****** ****** *   *  * **   * * * *  

consensus_5245#0      TGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCG 292
consensus_5245#1      TGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCG 276
consensus_5245#2      TTACAAT--TCCGGAACCGGTTGGGGTTGGATTGGAAT-----TTCCAAAGTTTGGG--A 289
                      *    **  * *      *   * ** ** *   * **     * ***  *    *    

consensus_5245#0      ATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCAC 352
consensus_5245#1      ATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCAC 336
consensus_5245#2      ACCCGGTTGGGCATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGC-C 348
                      *   *** *     *   * ** ** *** ** **      * **       *  *** *

consensus_5245#0      TTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGC 412
consensus_5245#1      TTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGC 396
consensus_5245#2      TGGCCCCNGGAATTGGTTGGGT--TCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGC 406
                      *  **   **  *           * *  *    ***   *   ***      **   **

consensus_5245#0      ACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCAC 472
consensus_5245#1      ACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAA 456
consensus_5245#2      CCCAAAATC-CCTGGAATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAA 465
                       * *  * *  * *    * *  * *     *  *           *      *    * 

consensus_5245#0      CTACGACTACTCCGCACACATCAT--GGACCTGGGACC--GACCGGTTTCGTCGACGTCG 528
consensus_5245#1      GTATGGCGAGGCAATGTGTACTGGTAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGA 516
consensus_5245#2      CTTTAA--ACCCAAAACGAGGCCGGATGGTTTACCCAAGAAGCCAATTTC-CANACCAAG 522
                       *      *  *                   *               ***    **    

consensus_5245#0      ATGTAGCGACGAT---GACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTC 585
consensus_5245#1      ATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGC 576
consensus_5245#2      GGTTGGTTGGGG----GCCCCGGGCGAAAATNGGCGCA--AACACATTGGCCCGGGAATT 576
                         * *          *                *                 *        

consensus_5245#0      TACATCTGGATGCAGGACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGC-- 643
consensus_5245#1      GTTGATTCAGTACAAAGTACATGAGGGCTG-ACGAAAAATTTGTATGGTTGTTTGAACCA 635
consensus_5245#2      CGCAATTTGGC-CAACCTTTAACCGGGAAGGCCGG------------------------- 610
                            *     **                   *                          

consensus_5245#0      GGTAACATTCTCGTCGACTGGATGGCAACATTTTCGTCAACATCATCACGACG 696
consensus_5245#1      GGCATCTAGCTCGGAAATAGTATGTGCACATGTATGTTAAATGCGTAT----- 683
consensus_5245#2      -----------------------------------------------------