cluster # 5246

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Anopheles gambiae
cluster # 5246 cluster # 5246 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5246#0 length = 979 sequences # 3

consensus_5246#1 length = 661 sequences # 1

consensusID : consensus_5246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 979
fasta sequence

                              [TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCCTGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCATTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTAC-ACGGCGGCAGCCGAA-ATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAGAGCCTTGGCTGCAGAATAA]

[+] EMBL CNS090SF             [TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCCTGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCATTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTAC ACGGCGGCAGCGAAATATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAGAGCCT              ]
[-] EMBL CNS090SG             [                                                                   CGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGAAATCACGCTATTCATTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGGTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACAACGGCGGCAGCCGAA ATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAGAGCCTTGGCTGCAGAATAA]
[+] EMBL BX624729             [                                                                                       ATACAGGAAAGCTCGCCGGAATCACGCTATTCATTACCGGTGCATCCAGGGGCATCGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTAC ACGGCGGCAGCCGAA ATTGAAGCAGCGGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGCAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGNTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGCAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGACAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCAGATCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGNCGCGGAANGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTA                                                                                                    ]




>consensus_5246#0
TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCC
TGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCA
TTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGG
CCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCT
ACACGGCGGCAGCCGAAATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATG
TGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTA
TCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATA
TGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAG
AGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGC
TTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGA
TGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATG
CGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGG
GCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCC
GACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAG
GTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGG
ACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAG
AGCCTTGGCTGCAGAATAA

consensusID : consensus_5246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [GCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAGCCGAAAGTAAGATTGCTATGACACCCTTTCCTCGGCTAGGAGGGCTTAAGAGCTTAATTGTCTGTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTATGGGAAACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAGCGTTCTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCT]

[-] EMBL BX608607             [GCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAGCCGAAAGTAAGATTGCTATGACACCCTTTCCTCGGCTAGGAGGGCTTAAGAGCTTAATTGTCTGTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTATGGGAAACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAGCGTTCTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCT]




>consensus_5246#1
GCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAGCC
GAAAGTAAGATTGCTATGACACCCTTTCCTCGGCTAGGAGGGCTTAAGAGCTTAATTGTC
TGTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCG
TAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGA
TATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAA
GCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTATGGGA
AACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAGCGTT
CTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGA
ACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCA
TGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAA
ACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5246#0      TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCC 60
consensus_5246#1      ------------------------------------------------------------
                                                                                  

consensus_5246#0      TGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCA 120
consensus_5246#1      --------------------------------------GCAGCCAAAACGGCGGAACCTC 22
                                                               ***  **   **  *    

consensus_5246#0      TTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGG 180
consensus_5246#1      ATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAG--CCGAAAGTAA-----GATTGCT 75
                       * *        ** *   ***   **  ***   *  * *****        *** *  

consensus_5246#0      CCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCT 240
consensus_5246#1      ATGACACCCTTTCCTCGGCTAGGAGGGCTTAA---------GAGCTT-----AATTGTCT 121
                         ***   *     * ** *  * ***  **          ****      **   ***

consensus_5246#0      ACACGGCGGCAGCCGAAATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATG 300
consensus_5246#1      -----GTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATG 176
                           *  **      * ******************************************

consensus_5246#0      TGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTA 360
consensus_5246#1      TGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTA 236
                      ************************************************************

consensus_5246#0      TCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATA 420
consensus_5246#1      TCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATA 296
                      ************************************************************

consensus_5246#0      TGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGT-------- 472
consensus_5246#1      TGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTAT 356
                      ****************************************************        

consensus_5246#0      ------------------------------------------------------------
consensus_5246#1      GGGAAACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAG 416
                                                                                  

consensus_5246#0      -----------ATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATC 521
consensus_5246#1      CGTTCTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATC 476
                                 *************************************************

consensus_5246#0      CTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTAT 581
consensus_5246#1      CTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTAT 536
                      ************************************************************

consensus_5246#0      ACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGT 641
consensus_5246#1      ACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGT 596
                      ************************************************************

consensus_5246#0      GCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAG 701
consensus_5246#1      GCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAG 656
                      ************************************************************

consensus_5246#0      ATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCT 761
consensus_5246#1      ATGCT------------------------------------------------------- 661
                      *****                                                       

consensus_5246#0      GCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGAC 821
consensus_5246#1      ------------------------------------------------------------
                                                                                  

consensus_5246#0      GAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAAC 881
consensus_5246#1      ------------------------------------------------------------
                                                                                  

consensus_5246#0      GCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATT 941
consensus_5246#1      ------------------------------------------------------------
                                                                                  

consensus_5246#0      TGTTCGGATTGCATTCCAGAGCCTTGGCTGCAGAATAA 979
consensus_5246#1      --------------------------------------