cluster # 5254

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Anopheles gambiae
cluster # 5254 cluster # 5254 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5254#0 length = 638 sequences # 1

consensus_5254#1 length = 585 sequences # 2
consensus_5254#2 length = 569 sequences # 1

consensusID : consensus_5254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGCCATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAGTATAACGGCTACGGCTGCCAGTATTGGTGCGGGCGGTATACCCCAAGCAGGTTTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTTGGTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGGGCTGCGATCGTCTACCACTACAGCAAGGGCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGGAGCTGGGATACCACAGCGACACGATACTGGCGAAACGACGATTAGAAGCATCCGATTGTAGATTGAGCTACAAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANTATGGTGCGTATATTCTATGACTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGATCAATCGCGTNTGCGCAGGGTTCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA]

[+] EMBL BX468377             [GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGCCATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAGTATAACGGCTACGGCTGCCAGTATTGGTGCGGGCGGTATACCCCAAGCAGGTTTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTTGGTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGGGCTGCGATCGTCTACCACTACAGCAAGGGCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGGAGCTGGGATACCACAGCGACACGATACTGGCGAAACGACGATTAGAAGCATCCGATTGTAGATTGAGCTACAAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANTATGGTGCGTATATTCTATGACTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGATCAATCGCGTNTGCGCAGGGTTCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA]




>consensus_5254#0
GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGC
CATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAG
TATAACGGCTACGGCTGCCAGTATTGGTGCGGGCGGTATACCCCAAGCAGGTTTGGTAAC
GCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCATCATTGC
CGTCGACTGGCTTGGTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCG
GGGCTGCGATCGTCTACCACTACAGCAAGGGCGAGCTGCAGAACACGAAAAGCCTGGATG
GAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGGAGCTGGGATAC
CACAGCGACACGATACTGGCGAAACGACGATTAGAAGCATCCGATTGTAGATTGAGCTAC
AAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANTATGGTGCGTATATTCTATGA
CTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGATCAATCGCGTNTGCGCAGGGT
TCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA

consensusID : consensus_5254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 585
fasta sequence

                              [GCAAGAATCGCGCNCGAGGNTATGCAGTATTGGTGCGGCGGTATA-CCCAGGCAGGTCTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCATACCA-ACCGACACGATACTGGGCAAACGACGATAAGAACATCCGATTGTAGCATTGAGCTACAAGATCCGGGTGATATCAAGAAGACCCGGCTGATTGGTGCTATTTTATGACTCCTACTCGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGGCAAGTGGCGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACGCAGCTCC]

[+] EMBL AL696873             [GCAAGAATCGCGCNCGAGGNTATGCAGTATTGGTGCGGCGGTATA CCCAGGCAGGTCTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCATACCA ACCGACACGATACTGGGCAAACGACGATAAGAACATCCGATTGTAGCATTGAGCTACAAGATCCGGGTGATATCAAGAAGACCCGGCTGATTGGTGCTATTTTATGACTCCTACTCGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGGCAAGTGGCGGCTGTCGCG                                                                                          ]
[+] EMBL BX614398             [                                    gcCGGTATACCCCAGGCAGGTCTGGTAACGCTCGTGATTGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGAGCTGCGATCGTCTACCACTACA GCAAGGCCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCATACCACACCGACACGATACT GGCAAACGACGATAAGAACATCCGATTGTAG ATTGAGCTACAAGATCCGGGTGATATCAAGAAGACCCGCCTGATTGGTGCTATTTTATGACTCCTACTCGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGG AAGTGGCGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACGCAGCTCC]




>consensus_5254#1
GCAAGAATCGCGCNCGAGGNTATGCAGTATTGGTGCGGCGGTATACCCAGGCAGGTCTGG
TAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCA
TTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCT
TCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAAAAGCCTG
GATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCA
TACCAACCGACACGATACTGGGCAAACGACGATAAGAACATCCGATTGTAGCATTGAGCT
ACAAGATCCGGGTGATATCAAGAAGACCCGGCTGATTGGTGCTATTTTATGACTCCTACT
CGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGGCAA
GTGGCGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTG
ATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACGCAGCTCC

consensusID : consensus_5254#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [CCGCCCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGACACGCATTACGGTTTATTTGTTGTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAGCAGATAAGATAGAAGCGGTAAGACAAATAATAGGCTACAAACCGTGTATCGTAGAGGAACAGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTGTAAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATACGACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTCACAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAGTTCCGTTTTGGTGACTATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTACCCTCCCATCCCCCATCCATAAAACTCGATGACTGAAATACAACTTTGAATTATG]

[+] EMBL BM585833             [CCGCCCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGACACGCATTACGGTTTATTTGTTGTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAGCAGATAAGATAGAAGCGGTAAGACAAATAATAGGCTACAAACCGTGTATCGTAGAGGAACAGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTGTAAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATACGACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTCACAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAGTTCCGTTTTGGTGACTATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTACCCTCCCATCCCCCATCCATAAAACTCGATGACTGAAATACAACTTTGAATTATG]




>consensus_5254#2
CCGCCCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGAC
CTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGA
CACGCATTACGGTTTATTTGTTGTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAG
CAGATAAGATAGAAGCGGTAAGACAAATAATAGGCTACAAACCGTGTATCGTAGAGGAAC
AGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTGT
AAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATAC
GACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTCA
CAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAGTTCCGTTTTGGTGACT
ATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTACCCTCCCATCCCCCATCCATAAAACT
CGATGACTGAAATACAACTTTGAATTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5254#0      GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGC 60
consensus_5254#1      ------------------------------------------------------------
consensus_5254#2      ------------------------------------------------------------
                                                                                  

consensus_5254#0      CATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAG 120
consensus_5254#1      -------------------------------------------------------GCAAG 5
consensus_5254#2      --------------------------------------------------------CCGC 4
                                                                                  

consensus_5254#0      TATAACGGCTACGGCTGC-CAGTATTGGT----GCGGGCGGTATACCCCAAGCAGGTTTG 175
consensus_5254#1      AATCGCGCNCGAGGNTATGCAGTATTGGT----GCGG-CGGTATACCC-AGGCAGGTCTG 59
consensus_5254#2      CCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTT 64
                           **     *      *   *****       *  *** * **     **     * 

consensus_5254#0      GTAACGCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCAT- 234
consensus_5254#1      GTAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCAT- 118
consensus_5254#2      TATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGACACG 124
                           * ***  **        ** *   * ****      * *   *    *   **  

consensus_5254#0      CATTGCCGTCGACTGGCTTGGTCGATCGATTCCGAACTCTG---GTGAACGTGCTTGGC- 290
consensus_5254#1      CATTGCCGTCGACTGGCT-GCTCGATCGATTCCGAACTCTG---GTGAACGTGCTTGGC- 173
consensus_5254#2      CATTACGGTTTATTTGTT--GTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAGCA 182
                      **** * **  * * * *   *   *  *   * *  * *       ****   ** ** 

consensus_5254#0      GATAGCTTCGGGGCTGCGATCGTCTACCACTACAG-CAAGGGCGAGCTGCAGAACACGAA 349
consensus_5254#1      GATAGCTTCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAA 233
consensus_5254#2      GATAAGATAGAAGCGGTAA--GACAAATAATAGGCTACAAACCGTG-TATCGTAGAGGAA 239
                      ****   * *  ** *  *  * * *  * **      *   ** * *   * * * ***

consensus_5254#0      AAGCCTGGATGGAGGGCT--GTCCGGTGCGACACATCTC-TCGCAGG-ACTCAAGCGATC 405
consensus_5254#1      AAGCCTGGATGGAGGGCT--GTCCGGTGCGACACATCTC-TCGCAGG-ACTCAAGCGATC 289
consensus_5254#2      CAGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTG 299
                       ***  ** * *  *  *  **   *** * *   * *  *****   * *** * * * 

consensus_5254#0      CCGGAGCTGGGATACCAC-AGCGACACGATACTGGCGAAACGACGATTAGAAGC---ATC 461
consensus_5254#1      CCG-AGCTGGCATACCA--ACCGACACGATACTGGGCAAACGACGATAAGAA-C---ATC 342
consensus_5254#2      TAAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATA 359
                          **** *  *        *   *   **      ***   * ** **   *   ** 

consensus_5254#0      CGATTGTAG-ATTGAGCTACAAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANT 520
consensus_5254#1      CGATTGTAGCATTGAGCTACAAGATCC-GGGTGATATCA----AGAAGACCCGGCTGATT 397
consensus_5254#2      CGACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTC 419
                      ***    **    * * *    **  *  *       **                     

consensus_5254#0      AT-GGTGCGTATATTCTATGACTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGA 579
consensus_5254#1      ---GGTGC---TATTTTATGACTCCTAC-TCGCTACTTAATGGCG-CACTTTTCTGCGGA 449
consensus_5254#2      ACAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAG-TTCCGTTTTGGTGA 478
                           *     *    ** **    **  * * **  *** **     *  ** **  **

consensus_5254#0      TCAATCGCGTNTGCGCAGGGTTCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA- 638
consensus_5254#1      TCAATCGCGTTTGCGCA--GTTTACGAAGGCAAGTGGCGGCTGTCGCG-AAATTGGCCAT 506
consensus_5254#2      CTATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTA----CCCTCCCATCCCCCATCCAT 534
                        *   *  * **   *  ***    *  *   **     *  ** *          ** 

consensus_5254#0      ------------------------------------------------------------
consensus_5254#1      CATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTG 566
consensus_5254#2      AAAACTCGATGACTGAAATACAACTTTGAATTATG------------------------- 569
                                                                                  

consensus_5254#0      -------------------
consensus_5254#1      ACTGAGTCGACGCAGCTCC 585
consensus_5254#2      -------------------