cluster # 5258

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Anopheles gambiae
cluster # 5258 cluster # 5258 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5258#0 length = 1301 sequences # 3

consensus_5258#1 length = 489 sequences # 1

consensusID : consensus_5258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1301
fasta sequence

                              [AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAAANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGAAAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAGGACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACTCGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTTCCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGAAGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGCGTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACTGGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATTTGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTATCAATACTTTGCCGAATCTTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAAGAAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGTTCGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTCACAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATAGAAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAATGTACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA]

[+] EMBL AL696992             [AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAAANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGAAAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAGGACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACTCGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTTCCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGAAGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGCGTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACTGGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM632382             [                                                                                                                                                                                                       ccgGGGTAATCGATAATGATGATGATGATGATGATGTCACTCGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTTCCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGAAGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGCGTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACTGGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATTTGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX626219             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTACTTTTCTCTTCCTTTCCCCGGTAAAGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGNATGTACATCANTGTGCTAAAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTATCAATACTTTGCCGAATCTTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAAGAAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGTTCGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTCACAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATAGAAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAATGTACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA]




>consensus_5258#0
AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAA
ANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGA
AAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAG
GACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACT
CGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTT
CCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGA
AGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGC
GTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACT
GGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATT
TGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATG
TTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAG
TTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGAC
TCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCC
CGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGC
GTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTA
TTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTATCAATACTTTGCCGAATC
TTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAAG
AAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGTT
CGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTCA
CAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATAG
AAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAATG
TACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA

consensusID : consensus_5258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [CCGCGGACGCGTGGGCAAATTTAAAAGTACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAACGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAATCTTACATTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAAGAAATCCACACGCAA]

[+] EMBL BM632078             [CCGCGGACGCGTGGGCAAATTTAAAAGTACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAACGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAATCTTACATTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAAGAAATCCACACGCAA]




>consensus_5258#1
CCGCGGACGCGTGGGCAAATTTAAAAGTACACACACACACACATCCTATTGAATGTTATT
TAATACACATACATTTCAATTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGC
CATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGACTCGAGA
TTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAA
CGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTAT
GTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTT
TTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAATCTTACA
TTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAAGAAATC
CACACGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5258#0      AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAA 60
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      ANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGA 120
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      AAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAG 180
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      GACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACT 240
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      CGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTT 300
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      CCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGA 360
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      AGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGC 420
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      GTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACT 480
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      GGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATT 540
consensus_5258#1      -----------------------------------------------------------C 1
                                                                                  

consensus_5258#0      TGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATG 600
consensus_5258#1      CGCGGACGCGTGG----GCAAATTTAAAAGTACACACACACACACA--TCCTATTGAATG 55
                       *  *  * **       ****************************  ************

consensus_5258#0      TTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAG 660
consensus_5258#1      TTATTTAATACACATACATTTCAATT-ATTGTCACTTGTTCCATGATGTTTGCGGTTTAG 114
                      ************************** *********************************

consensus_5258#0      TTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGAC 720
consensus_5258#1      TTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGAC 174
                      ************************************ ***********************

consensus_5258#0      TCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCC 780
consensus_5258#1      TCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCC 234
                      ************************************************************

consensus_5258#0      CGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGC 840
consensus_5258#1      CGGTAACGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGC 294
                      ****** *************** *************************************

consensus_5258#0      GTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTA 900
consensus_5258#1      GTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTA 354
                      ************************************************************

consensus_5258#0      TTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTA-TCAATACTTTGCCGAAT 959
consensus_5258#1      TTGCTTTTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAAT 414
                      ************** ***** *************** *** * *****************

consensus_5258#0      CTTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAA 1019
consensus_5258#1      CTTACATTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAA 474
                      ****** ** ***************************** ********************

consensus_5258#0      GAAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGT 1079
consensus_5258#1      GAAATCCACACGCAA--------------------------------------------- 489
                      ***************                                             

consensus_5258#0      TCGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTC 1139
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      ACAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATA 1199
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      GAAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAAT 1259
consensus_5258#1      ------------------------------------------------------------
                                                                                  

consensus_5258#0      GTACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA 1301
consensus_5258#1      ------------------------------------------