|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 726 fasta sequence
[AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGA--TGTGTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTT-AAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGANAAGTCTTTGAACTTATGAAGCAAAATTACCTA]
[+] EMBL AL697056 [AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGA TGTGTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTT AAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGAN ]
[+] EMBL BX611463 [ CGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCA GGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAA AAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGAT AAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAA TTATCGAG AA TTATAATAGA A ATTT GAA A TT GAAA CAAAGGC AAAA CATGCAAAC AAAACCACCA ATATATTAA CACG AATTGTAATTTGCGATAACTACACAACCCACGTA CACATGAACGCGT ACACAGCGGAAGAAGTCTTTGAACTTATGAAGCAAAATTACCTA]
consensusID : consensus_5261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAACGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAAC]
[+] EMBL BM579721 [CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAACGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAAC]
consensusID : consensus_5261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGCAAAACATG]
[+] EMBL AL930809 [CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGCAAAACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5261#0 ------------------------------------------------------------
consensus_5261#2 ------------------------------------------------------------
consensus_5261#1 CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAA 60
consensus_5261#0 ------------------AGATCGCCNGAG---GTNAAAGTCATTAC--CATAAACAACA 37
consensus_5261#2 CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA 60
consensus_5261#1 CGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA 120
**** ** *********** * *********
consensus_5261#0 GCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCG 97
consensus_5261#2 G-TATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCG 119
consensus_5261#1 G-TATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCG 179
* ******************************************************* **
consensus_5261#0 TCCCAGCAAAGTATGTATGATGTGTGTGTGTGT--TGAACAAAAGATCGGTGTTAATCCA 155
consensus_5261#2 TCCCAGCAAAGTATGTATGATGTGTGTGTGTGT--TAAACAAAAGATCGGTGTTAATCCA 177
consensus_5261#1 TCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCA 239
********************************* * ***********************
consensus_5261#0 ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAAT 215
consensus_5261#2 ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAAT 237
consensus_5261#1 ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAAT 299
***************************************** ******************
consensus_5261#0 TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACG 275
consensus_5261#2 TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGG-AGCGCTCTCCCTGGACGATACG 296
consensus_5261#1 TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGG-AGCGCTCTCCCTGGACGATATG 358
************************************* ******************** *
consensus_5261#0 TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 335
consensus_5261#2 TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 356
consensus_5261#1 TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 418
************************************************************
consensus_5261#0 ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAA 395
consensus_5261#2 ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAA 416
consensus_5261#1 ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAA 478
*********************************** ************************
consensus_5261#0 TGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 455
consensus_5261#2 TGTCAAACAAAAAG-AGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 475
consensus_5261#1 TGTCAAACAAAAAG-AGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 537
*********** ** *********************************************
consensus_5261#0 GCGATCAAAAACCATTTAAAAAAA-GCGGTAGGATAAATTGAATTACATATAAACACAAG 514
consensus_5261#2 GCGAT-AAAAACCATTTAAAAAAA-GCGGTAGGATAAATTGAATTACATATAAACACAAG 533
consensus_5261#1 GCGAT-AAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAG 596
***** ****************** ***********************************
consensus_5261#0 CACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACAC 574
consensus_5261#2 CACGAAGTAAACGAACTCTAA-TTATCGANAA---TTATAATAGAAA--CTTTCGCNNAC 587
consensus_5261#1 CACGAAGTAAACGAAC-------------------------------------------- 612
****************
consensus_5261#0 TTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAA 634
consensus_5261#2 TTGAAA--CAAAGGCAAAA--CATG----------------------------------- 608
consensus_5261#1 ------------------------------------------------------------
consensus_5261#0 TTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGAN 694
consensus_5261#2 ------------------------------------------------------------
consensus_5261#1 ------------------------------------------------------------
consensus_5261#0 AAGTCTTTGAACTTATGAAGCAAAATTACCTA 726
consensus_5261#2 --------------------------------
consensus_5261#1 --------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||