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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence
[TCTTAAGCTAGGTCTGGAAGTAAAAAAGAAAACATGAAGAAAACAGGTACCGACTAGTAGGATGGAAAAAGGTGTGTGGGCAAATGTCGGCAAATGGGAACGGAAGAGAGTGGGTACGCCGTAAACGTTAGCAGTACGAGAAGTGGCTTGTGTGTGTGTACCAAAGCAAGAAAAATACAGGCTAGCATTTGATACCGAGGAACTTATGTGCAACCCACGTTTGTGCACTTATTGGACATTTGTAGATTAATTATTAAATATGAAACAAAACAAAAAACACACACACTGCAAGCGCAATAGGGAAATAGCCGAAAGCAAAAACAAAAAAGTAACAATTAAGGGAGGAAGAAAAAACACTCAAAAATCAATCCTGTCCACAGGGATTTTTTTTCTGTTGATGTTCTATAAAGGAATCTTCTGTGCAAACGCGTAATTTGAGTTTCGTTACGTTTCGGTAATGTTATCCCGCAGTAACCCACACGCTGTAAGACAGTTTACAATATCGTCTTCATCTCGTATGCAAACAAAAATCGATGGAGTGAAAGACTTCTGCCATTCCTCTCAGTGGCGCCCAGCCTGCAATTGCCGGTGTGCTACTTAATACTTCATGTTGTTTGTCGATTGCAACCTGGCCCTCAGGTGCTCGTATGTATGTACTTAAGCAAACGTTAACTGTAATGGTATTACATGGAACACGTTTACTTAAATCACAGTTCCTTTGCGACAAAGCAAAGAACGCCTTTGGCAGGTTTTTTCAATGGCAGAAGAGCGGTAGCATGATTAAAATAACTGTTACGAAAAGAACTTAGGCGAGCCCTGCAATTATCTACCAAACCGGGCGAAATTTGCAGCGAGTTAGAAATGATCGGGCGAACCCGATCGTGTCCGGAG]
[+] EMBL BX613695 [TCTTAAGCTAGGTCTGGAAGTAAAAAAGAAAACATGAAGAAAACAGGTACCGACTAGTAGGATGGAAAAAGGTGTGTGGGCAAATGTCGGCAAATGGGAACGGAAGAGAGTGGGTACGCCGTAAACGTTAGCAGTACGAGAAGTGGCTTGTGTGTGTGTACCAAAGCAAGAAAAATACAGGCTAGCATTTGATACCGAGGAACTTATGTGCAACCCACGTTTGTGCACTTATTGGACATTTGTAGATTAATTATTAAATATGAAACAAAACAAAAAACACACACACTGCAAGCGCAATAGGGAAATAGCCGAAAGCAAAAACAAAAAAGTAACAATTAAGGGAGGAAGAAAAAACACTCAAAAATCAATCCTGTCCACAGGGATTTTTTTTCTGTTGATGTTCTATAAAGGAATCTTCTGTGCAAACGCGTAATTTGAGTTTCGTTACGTTTCGGTAATGTTATCCCGCAGTAACCCACACGCTGTAAGACAGTTTACAATATCGTCTTCATCTCGTATGCAAACAAAAATCGATGGAGTGAAAGACTTCTGCCATTCCTCTCAGTGGCGCCCAGCCTGCAATTGCCGGTGTGCTACTTAATACTTCATGTTGTTTGTCGATTGCAACCTGGCCCTCAGGTGCTCGTATGTATGTACTTAAGCAAACGTTAACTGTAATGGTATTACATGGAACACGTTTACTTAAATCACAGTTC ]
[+] EMBL BX610913 [ ATGGGAACGGAAGAGAGTGGGTACGCC TAAACGTTAGCAGTACGAGAAGTGGCTTGTGTGTGTGTACCAAAGCAAGAAAAATACAGGCTAGCATTTGATACCGAGGAACTTATGTGCAACCCACGTTTGTGCACTTATTGGACATTTGTAGATTAATTATTAAATATGAAACAAAACAAAAAACACACACACTGCAAGCGCAATAGGGAAATAGCCGAAAGCAAAAACAAAAAAGTAACAATTAAGGGAGGAAGAAAAAACACTCAAAAATCAATCCTGTCCACAGGGATTTTTTTTCTGTTGATGTTCTATAAAGGAATCTTCTGTGCAAACGCGTAATTTGAGTTTCGTTACGTTTCGGTAATGTTATCCCGCAGTAACCCACACGCTGTAAGACAGTTTACAATATCGTCTTCATCTCGTATGCAAACAAAAATCGATGGAGTGAAAGACTTCTGCCATTCCTCTCAGTGGCGCCCAGCCTGCAATTGCCGGTGTGCTACTTAATACTTCATGTTGTTT ]
[+] EMBL BX616358 [ AATAGCCGAAAGCAAAAACAAAAAAGTAACAATTAAGGGAGGAAGAAAAAACACTCAAAAATCAATCCTGTCCACAGGGATTTTTTTTCTGTTGATGTTCTATAAAGGAATCTTCTGTGCAAACGCGTAATTTGAGTTTCGTTACGTTTCGGTAATGTTATCCCGCAGTAACCCACACGCTGTAAGACAGTTTACAATATCGTCTTCATCTCGTATGCAAACAAAAATCGATGGAGTGAAAGACTTCTGCCATTCCTCTCAGTGGCGCCCAGCCTGCAATTGCCGGTGTGCTACTTAATACTTCATGTTGTTTGTCGATTGCAACCTGGCCCTCAGGTGCTCGTATGTATGTACTTAAGCAAACGTTAACTGTAATGGTATTACATGGAACACGTTTACTTAAATCACAGTTCCTTTGCGACAAAGCAAAGAACGCCTTTGGCAGGTTTTTTCAATGGCAGAAGAGCGGTAGCATGATTAAAATAACTGTTACGAAAAGAACTTAGGCGAGCCCTGCAATTATCTACCAAACCGGGCGAAATTTGCAGCGAGTTAGAAATGATCGGGCGAACCCGATCGTGTCCGGAG]
consensusID : consensus_5262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence
[TGTGTTGACGTGCAGCAATCAACACATTTGATTGACAGTGCAACAACGTGCCAAACATCGAATTGGTTCGATTAGACGAGTTTTAGGTTTGTTCGTTAGTTTGCAGCGCGCCTTGGGGACAGCTGGCGAAACCTGCGGTGCCCAGTCTAGCTCCAATTTTCTGTGGATACACTCAGCGGTAGCTTTCTCGCCTGCATGCAGCCGGCTGGGTGGAGGTGGACACTGTCGGTGGTCCGTTTGCACTGCTTACGGCGCCAGAGGCTCAAGAAGGTTGTGCACACAACCTGGAACGCTTTAAGCAGATGCATCACGGGTACCAACAGGCGTGTACCCGTGCCTACCAGTGCGCTGCGTTTGCTGCGTGCTACAGCCGAGTGTCTCCTTACGCCCGCGGGTTTCCGAGCCGTCACCGAAGGCGTGTGGAATGCGTCGAAGAATTCGAAGGAGAAGAAAAAACAACACTTAAACAGTTGAAGACAGTGTGAGGACAACGATTGAACATTACTGTTACGAAAAGAACTTAGGCGAGCCCTGCAATTATCTACCAAACCGGGCGAAATTTGCAGCGAGTTAGAAATGATCGGGCGAACCCGATCGTGGCCGGAGCGCGATGAACACCACACGTGTGTGTGGGTGAGTGCTCAAGAGGCCGAAAAGGAAGAGGTTCGGGTTCGGGATATCGCAGGGCATTCGGCAAGCGTACGAGCAGGGA]
[+] EMBL BX608770 [TGTGTTGACGTGCAGCAATCAACACATTTGATTGACAGTGCAACAACGTGCCAAACATCGAATTGGTTCGATTAGACGAGTTTTAGGTTTGTTCGTTAGTTTGCAGCGCGCCTTGGGGACAGCTGGCGAAACCTGCGGTGCCCAGTCTAGCTCCAATTTTCTGTGGATACACTCAGCGGTAGCTTTCTCGCCTGCATGCAGCCGGCTGGGTGGAGGTGGACACTGTCGGTGGTCCGTTTGCACTGCTTACGGCGCCAGAGGCTCAAGAAGGTTGTGCACACAACCTGGAACGCTTTAAGCAGATGCATCACGGGTACCAACAGGCGTGTACCCGTGCCTACCAGTGCGCTGCGTTTGCTGCGTGCTACAGCCGAGTGTCTCCTTACGCCCGCGGGTTTCCGAGCCGTCACCGAAGGCGTGTGGAATGCGTCGAAGAATTCGAAGGAGAAGAAAAAACAACACTTAAACAGTTGAAGACAGTGTGAGGACAACGATTGAACATTACTGTTACGAAAAGAACTTAGGCGAGCCCTGCAATTATCTACCAAACCGGGCGAAATTTGCAGCGAGTTAGAAATGATCGGGCGAACCCGATCGTGGCCGGAGCGCGATGAACACCACACGTGTGTGTGGGTGAGTGCTCAAGAGGCCGAAAAGGAAGAGGTTCGGGTTCGGGATATCGCAGGGCATTCGGCAAGCGTACGAGCAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5262#0 TCTTAAGCTAGGTCTGGAAGTAAAAAAGAAAACATGAAGAAAACAGGTACCGACTAGTAG 60
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GATGGAAAAAGGTGTGTGGGCAAATGTCGGCAAATGGGAACGGAAGAGAGTGGGTACGCC 120
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GTAAACGTTAGCAGTACGAGAAGTGGCTTGTGTGTGTGTACCAAAGCAAGAAAAATACAG 180
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GCTAGCATTTGATACCGAGGAACTTATGTGCAACCCACGTTTGTGCACTTATTGGACATT 240
consensus_5262#1 ---------------------------------------TGTGTTGACGTGCAGCA-ATC 20
* *** ** * * * **
consensus_5262#0 TGTAGATTAATTATTAAATATGAAACAAAACAAAAAACACACACACTGCAAGCGCAATAG 300
consensus_5262#1 AACACATT--TGATTGACAGTGCAACAACGTGCCAAACATCGAATTGGTTCGATTAGACG 78
* *** * *** * ** ***** ***** * * * * *
consensus_5262#0 GGAAATAGCCGAAAGCAAAAACAAAAAAGTAACAATTAAGGGAGGAAGAAAAAACACTCA 360
consensus_5262#1 AGTTTTAGGTTTGTTCGTTAGTTTGCAGCGCGCC-TTGGGGACAGCTGGCGAAACCTGCG 137
* *** * * * * ** ** * * **** *
consensus_5262#0 AAAATCAATCCTGTCCACAGGGATTTTTTTTCTGTTGATGTTCTATAAAGGAATCTTCTG 420
consensus_5262#1 GTGCCCAGTCTAGCTCCAA--------TTTTCTGTGGATACACT-CAGCGGTAGCTTTCT 188
** ** * * * ******** *** ** * ** * ***
consensus_5262#0 TGCAAACGCGTAATT---TGAGTTTCGTTACGTTTCGGTAATGTTATCCCGCAGTAACCC 477
consensus_5262#1 CGCCTGCATGCAGCCGGCTGGGTGGAGGTGGACACTGTCGGTG--GTCCGTTTGCACTGC 246
** * * * ** ** * * * ** *** * * *
consensus_5262#0 ACACGCTGTAAGACAGTTTACAATATCGTCTTCATCTCGTATGCAAACAAAAATCGATGG 537
consensus_5262#1 TTACGGCGCCAGAGGCTCAAGAAGGTTGT---------GCACACAACCTGGAACGCTTTA 297
*** * *** * * ** * ** * * *** * ** *
consensus_5262#0 AGTGAAAGACTTCTGCCATTCCTCTCAGTGGCGCCCAGCCTGCAATTGCCGGTGTGCTAC 597
consensus_5262#1 AGCAGA-----TGCATCACGGGTACCAACAGGCGTGTACCCGTGCCTACCAGTGCGCTGC 352
** * * ** * ** * ** * * ** *** *** *
consensus_5262#0 TTAATACTTCATGTTGTTTGTCGATTGCAACCTGGCCCTCAGGTGCTCGTATGTATGTAC 657
consensus_5262#1 GTT-TGCTGCGTGCTACA-GCCGAGTGTCTCCTTACGCCCGCGGGTTT------------ 398
* * ** * ** * * *** ** *** * * * * * *
consensus_5262#0 TTAAGCAAACGTTAACTGTAATGGTATTACATGGAACACGTTTACTTAAATCACAGTTCC 717
consensus_5262#1 CCGAGC---CGTCACC---GAAGGCGT---GTGGAATGCGTCGA--------AGAATTCG 441
*** *** * * * ** * ***** *** * * * ***
consensus_5262#0 TTTGCGACAAAGCAAAGAACGCCTTTGGCAGGTTTTTTCAATGGCAGAAGAGCGGTAGCA 777
consensus_5262#1 AAGGAGAAGAAA-AAACAACAC-TTAAACAGTTGAAGACAGTGTGAGGACAACGATTG-- 497
* ** ** *** *** * ** *** * ** ** ** * * ** * *
consensus_5262#0 TGATTAAAATAACTGTTACGAAAAGAACTTAGGCGAGCCCTGCAATTATCTACCAAACCG 837
consensus_5262#1 -----AACATTACTGTTACGAAAAGAACTTAGGCGAGCCCTGCAATTATCTACCAAACCG 552
** ** *************************************************
consensus_5262#0 GGCGAAATTTGCAGCGAGTTAGAAATGATCGGGCGAACCCGATCGTGTCCGGAG------ 891
consensus_5262#1 GGCGAAATTTGCAGCGAGTTAGAAATGATCGGGCGAACCCGATCGTGGCCGGAGCGCGAT 612
*********************************************** ******
consensus_5262#0 ------------------------------------------------------------
consensus_5262#1 GAACACCACACGTGTGTGTGGGTGAGTGCTCAAGAGGCCGAAAAGGAAGAGGTTCGGGTT 672
consensus_5262#0 ----------------------------------------
consensus_5262#1 CGGGATATCGCAGGGCATTCGGCAAGCGTACGAGCAGGGA 712
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||