These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1264 fasta sequence [CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCAACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTCACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCTGCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCATCGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAAGGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTGCGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCATGGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCAGCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACAC------ACACCCGTAGCACACGGACAATCGGCCCTAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACGCGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTTTAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAAACAA] [+] EMBL AL697102 [CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCAACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTCACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCTGCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCATCGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAAGGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTGCGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCATGGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCAGCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGC ] [+] EMBL BX611208 [ ATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGCGAGACGAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACAC ACACCCGTAGCACACGGACAATCGGCCCTAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCT ] [+] EMBL BM598117 [ ccgCAACGAGTACTTGTTTGCGCTGACCAGTCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCCGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTACAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACACACACATACACCCGTAGCACACGGACAATAGGCCCTAGGCTGCAATACCCTGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACGCGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTTTAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAAACAA] consensusID : consensus_5263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTAC] [+] EMBL BM621153 [CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5263#0 CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCA 60 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 ACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTC 120 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 ACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCT 180 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 GCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCAT 240 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 CGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAA 300 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 GGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTG 360 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 CGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCAT 420 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 GGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCA 480 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 GCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGA 540 consensus_5263#1 --------CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAA 52 * *** * *********************************** * consensus_5263#0 TAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT 600 consensus_5263#1 TAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT 112 ****** ***** ***** ***************************************** consensus_5263#0 GCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGT 660 consensus_5263#1 GCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGT 172 ************ ******************************** ******* ***** consensus_5263#0 GTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCT 720 consensus_5263#1 GTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCT 232 ******************************* **************************** consensus_5263#0 CGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGC 780 consensus_5263#1 CGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGC 292 ******************************* **************************** consensus_5263#0 TGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTT 840 consensus_5263#1 TGGCACCAGCCCTAC--------------------------------------------- 307 *************** consensus_5263#0 CCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAG 900 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 AGACAATTATGCTAATTTTGTTTGACACACACACACCCGTAGCACACGGACAATCGGCCC 960 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 TAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTC 1020 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 CTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTT 1080 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 TTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACG 1140 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 CGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTT 1200 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 TAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAA 1260 consensus_5263#1 ------------------------------------------------------------ consensus_5263#0 ACAA 1264 consensus_5263#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||