These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence [TGAATTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATGGGATTTGCGAAACGGCTATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACGATGTTTCGAANAATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT] [+] EMBL BX626928 [TGAATTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATG ] [+] EMBL BX623413 [ TTTCTATTGGGTTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACA ] [+] EMBL BX620068 [ GAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACTGTTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTCAAATACAGCTTGGTGCAAAAGACGGACGAGTTCTACAAACAAGTGATCAGCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGCTCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCGATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTGGCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATATTCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGATCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGTCGGGAGTATTCAAAGTAGTGGAACAGTTCTCCTCGAAGTTATGGGATTTGCGAAACGGCTATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACGATGTTTCGAANAATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT] consensusID : consensus_5265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATTCTATTGGGTTGTTCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACTGTGTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGGGAACCGGAAGTTT] [+] EMBL AL697125 [GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATTCTATTGGGTTGTTCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACTGTGTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAGCGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTGTACTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGGGAACCGGAAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5265#0 ---------------------------------------------TGAATTTCTATTGGG 15 consensus_5265#1 GGCAAGAATCCGNCCCGCAGGCTATACAAAGTGTGTGCAAGTGTGTGAATT-CTATTGGG 59 ****** ******** consensus_5265#0 TTGTTCCAGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCCTTCTGTTACT 75 consensus_5265#1 TTGTTC-AGGAAGCACAATGAAGTGGTCAAAATTCATTTTACTCTCAGCTTCTTGTTACT 118 ****** ****************************************** * ******* consensus_5265#0 GT-TTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAG 134 consensus_5265#1 GTGTTCAGTAATATTCTCACAGTTGACGCCGGCCGTTTGGCATCGATGGACGTGGTCCAG 178 ** ********************************************************* consensus_5265#0 CGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTG 194 consensus_5265#1 CGCCTGAAGGAGCTCGAACCGAAGCATACCGAAATTAAGCATCGCATAATTAACTTCGTG 238 ************************************************************ consensus_5265#0 TACTCGGT-CAAATACAGCTTGG-TGCAAAAGACGGACGAGTTCTACAAACAAGTGATCA 252 consensus_5265#1 TACTCGGTTCAAATACAGTTTGGGTGCCAAAAAGGAACGGG------GAACCGGAAGTTT 292 ******** ********* **** *** *** * * *** * *** * * consensus_5265#0 GCGCAAAGGAAGGATCTCTCGCCAATTCGATCGCCCTCGAAGATGAGCTACTTTATCAGC 312 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 TCAACCATCAGACCCAGGCGGTGGATAGCAGCTGTCTGGACTTCCTGAAATCGATCGTCG 372 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 ATAGTAACATTAACGTGGCGGGCGTTGGATTTTCCAACTGCATCAATGACGTTGAACGTG 432 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 GCGTAGAGAGCGAGCTACATCAAGCACAGAAGCAGCTCAACGTGGACGAATCGGAAATAT 492 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 TCTACCAAAGTTTGTTGGACGTGTTCGAGGGTGAAAATGTGATCGCCGGTCCGGACGCGA 552 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 TCGCTGCGAAGCTGCAGAAGAAGGCAGCAGAAATTGATGCATTCGCTAGTGATTACATGT 612 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 CGGGAGTATTCAAAGTAGTGGAACAGNTCTCCTCGAAGTTATGGGATTTGCGAAACGGCT 672 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 ATCAAAGGNGTCTGAATGTGAACGAATCNGGTCTGAAGATGGCGTACGATGTTTCGAANA 732 consensus_5265#1 ------------------------------------------------------------ consensus_5265#0 ATCAGCTAACCAGCACTTGCCTAGGTTCAATTGTTAAT 770 consensus_5265#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||