|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1162 fasta sequence
[CCCCAGGCNTTAATTGGCACGATTGTTATGTACACACACATTGAACAATACACGATTTCATTCGATGTTCATGCTATGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCACAAGTTCAGATGAATGTTAACGGCAAAAGAATAGAAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTCTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTTAATTGGGAGGAACAGACCG-CCGATCGTGTTGTGTTTACACACCCTTCACGAAGCGAACGGCAGTTACAGCAAGCATTATATACAATCCGGATATACAGGAAAGCAAACACAAGTTGTATAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTAATACATACAAAGTAACAGAACCGGCGTTAATATTCGTTGTACAATCGGTAGATTTCGTAAACGAACCGGACCAATCGCCAGATTAGTCTGTCTANCGCGGTCCCAGTTGAAAGCAACTGAGGGATGCACTAATCGAGGCAA-GGCATACAATGATACGGCCAATTATAGGTGAACGACGATAGCGCAACGCTTTCGTATATGCAGCCAAGAGAACAAGTGTCTATTAACCAAAATAATAACGGAACGTTAATGATTAGCTTTATTATGTGTGCTTCGACAAATGCAATCAGCTGTGGCAGCTAAAAAAGGCGTTTGGAAGAGAAAGAGGCGTACGGGGAAAGAGGTAGAACAAATCATTATTGAAACAGTCCAAGCTTAGTTTATCCACCGTACAATATGCAATACACGGGTAATGATTTCGCTAGTAATGTTTTAAACGTTATCATCAACACATGCTTAGCAGGCAAGAGAACAAAACTCATGAAACACCAATTCGTTCAGTATCCTGTGCTAAATTATCGTAAATGTGGGTGTTATCGTTTCTGGTAGCAAAGCTGACCCCTTTTTCTTTGAAAAAGAATTTTAACGACCAATAGTGGTTCAGGTTAATCATATAT]
[+] EMBL AL697474 [CCCCAGGCNTTAATTGGCACGATTGTTATGTACACACACATTGAACAATACACGATTTCATTCGATGTTCATGCTATGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCACAAGTTCAGATGAATGTTAACGGCAAAAGAATAGAAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTCTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTTAATTGGGAGGAACAGACCG CCGATCGTGTTGTGTTTACACACCCTTCACGAAGCGAACGGCAGTTACAGCAAGCATTATATACAATCCGGATATACAGGAAAGCAAACACAAGTTGTATAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTAATACATACAAAGTAACAGAACCGGCGTTAATATTCGTTGTACAATCGGTAGATTTCGTAAACGAACCGGACCAATCGCCAGATTAGTCTGTCTANCGCGGTCCCAGTTGAAAGCAACTGAGGGATGCACTAATCGAGGCAA GGCATACAATGATAC ]
[+] EMBL BX617043 [ GAAAACAAGACTTATCCGTAGTTCACTTTTTGTTACATTTTTTAATTGGGAGGAAGAAACCGCCCGATCGTGCTGTGTTTACACACCCTTCACGGAGCGAACGGCAATTACAGCAAGCATTATATACAATCCGGATATAAAGGAAAGCAAACACAAGTTGT TAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTACTACATACAAAGTAACAGAA CGGCGTTCATATTCGTTGTACAATCGGTAG TTTCGTAAACG ACCGGCCCAATCGCC GATTAGT TGTCTATCGCGGTCCCAGTTG AAGCAACT AGGGATGCACTAATCGAGGCAATGGCATACAATGATACGGCCAATTATAGGTGAACGACGATAGCGCAACGCTTTCGTATATGCAGCCAAGAGAACAAGTGTCTATTAACCAAAATAATAACGGAACGTTAATGATTAGCTTTATTATGTGTGCTTCGACAAATGCAATCAGCTGTGGCAGCTAAAAAAGGCGTTTGGAAGAGAAAGAGGCGTACGGGGAAAGAGGTAGAACAAATCATTATTGAAACAGTCCAAGCTTAGTTTATCCACCGTACAATATGCAATACACGGGTAATGATTTCGCTAGTAATGTTTTAAACGTTATCATCAACACATGCTTAGCAGGCAAGAGAACAAAACTCATGAAACACCAATTCGTTCAGTATCCTGTGCTAAATTATCGTAAATGTGGGTGTTATCGTTTCTGGTAGCAAAGCTGACCCCTTTTTCTTTGAAAAAGAATTTTAACGACCAATAGTGGTTCAGGTTAATCATATAT]
consensusID : consensus_5268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence
[CCGAGGTTAACACATTGAACAAACACGATCCATACGATGTCATGCTATTGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCNACAAGTTCCGCATGAATGTTAACGGCCAAAGAATAGACAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTAATNTGGGAGGAACAGACGCCCGATACGTGTATGTGTTGTACACACCCTTCACGGACAGCGAACGGCAGTTACAGCCAAGCATTATATACACATCCGGGATATNAACAGGAAAGCCNAACCACAAGTTTGNCAGCTGTAGAAACAACTAGAGTCTCATCATACGCGAGCCGCGTAGCATTCAAGTTACGATAACAAGAAGGTAAACGAGGAAACGAGCGTNAAAGCTAATATTCCGGTATGGTACCAAANCGGGTACGTTTATCCGANAGAGCGAACCCGGGCCCCANATCGGCCAGNAACTNNCGCGTCTNGTCTCAGCCGCCGGCGGCCCCCANAGCATCNGACAACGCCANNCACTAGCACAGGCACTGCACCCAAATCCCACGGCCCACCNGGGCANTA]
[+] EMBL AL933688 [CCGAGGTTAACACATTGAACAAACACGATCCATACGATGTCATGCTATTGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCNACAAGTTCCGCATGAATGTTAACGGCCAAAGAATAGACAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTAATNTGGGAGGAACAGACGCCCGATACGTGTATGTGTTGTACACACCCTTCACGGACAGCGAACGGCAGTTACAGCCAAGCATTATATACACATCCGGGATATNAACAGGAAAGCCNAACCACAAGTTTGNCAGCTGTAGAAACAACTAGAGTCTCATCATACGCGAGCCGCGTAGCATTCAAGTTACGATAACAAGAAGGTAAACGAGGAAACGAGCGTNAAAGCTAATATTCCGGTATGGTACCAAANCGGGTACGTTTATCCGANAGAGCGAACCCGGGCCCCANATCGGCCAGNAACTNNCGCGTCTNGTCTCAGCCGCCGGCGGCCCCCANAGCATCNGACAACGCCANNCACTAGCACAGGCACTGCACCCAAATCCCACGGCCCACCNGGGCANTA]
consensusID : consensus_5268#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[CAACCNGGNGAAGAACATTACGCTCAGCAGATCGCCGCACGGTGNAAAACAATAATTTGCAATACTTTCGTTTAAATCATTCGAACTANGTGAGTGTATTTTACAGCGNCTACTGCACAAGTTCAGATGAATGTTAACGGCAAAAGAAGAGAAGAAAAAAACCAACATATATCAAACGACGCAATTTGCACGGGGCGCTCAAAAGCGTCACGTACACACACACACACACATATTTAACGATATCGNAAACAAGACTTATACCGTAGTTCACTAAGTGTAACATACTTACAACTCTGGGAGGACACAAAATCGAACCGAACTCGTGTCTGTGTTTACAACACACGCACCTTCACGAAGACGAACGGCCATGATTTCACCAGGCAAGACACTTATACTACCACATCCGCGCANATATACACGGCAACACAGCACAACACCAANAGATTTGTGCGTGTGACGGACACCCAA]
[+] EMBL AL697181 [CAACCNGGNGAAGAACATTACGCTCAGCAGATCGCCGCACGGTGNAAAACAATAATTTGCAATACTTTCGTTTAAATCATTCGAACTANGTGAGTGTATTTTACAGCGNCTACTGCACAAGTTCAGATGAATGTTAACGGCAAAAGAAGAGAAGAAAAAAACCAACATATATCAAACGACGCAATTTGCACGGGGCGCTCAAAAGCGTCACGTACACACACACACACACATATTTAACGATATCGNAAACAAGACTTATACCGTAGTTCACTAAGTGTAACATACTTACAACTCTGGGAGGACACAAAATCGAACCGAACTCGTGTCTGTGTTTACAACACACGCACCTTCACGAAGACGAACGGCCATGATTTCACCAGGCAAGACACTTATACTACCACATCCGCGCANATATACACGGCAACACAGCACAACACCAANAGATTTGTGCGTGTGACGGACACCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5268#1 --------------------------CCGAGGTTAACACATTGAACAA-ACACGATC-CA 32
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 CCCCAGGCNTTAATTGGCACGATTGTTATGTACACACACATTGAACAATACACGATTTCA 60
consensus_5268#1 TACGATGTCATGCTATTGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAA 92
consensus_5268#2 ---------------------------------------------CAACCNGGNGAAGAA 15
consensus_5268#0 TTCGATGTTCATGCTATGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAA 120
*** * * **
consensus_5268#1 TTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGT 152
consensus_5268#2 CA--TTAC-GCTCAGCAGATCGCCGCACGGTGNAAAACAATAATTTGCAA-TACTTTCGT 71
consensus_5268#0 TTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGT 180
** * *** * ** *** * **** ************ * ******
consensus_5268#1 TAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCNACAAGTTCCGCATGA 212
consensus_5268#2 TTAAATCATTCGAACTANGTGAGTGTATTTTACAGCGNCTACTGCACAAGTTCAG-ATGA 130
consensus_5268#0 TAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCG-CACAAGTTCAG-ATGA 238
* *************** ****************** * ******** * ****
consensus_5268#1 ATGTTAACGGCCAAAGAATAGACAGAAAAAAACCAACGTATATCAAACGACG-AATTTG- 270
consensus_5268#2 ATGTTAACGGCAAAAGAAGAGA-AGAAAAAAACCAACATATATCAAACGACGCAATTTGC 189
consensus_5268#0 ATGTTAACGGCAAAAGAATAGA-AGAAAAAAACCAACGTATATCAAACGACG-AATTTG- 295
*********** ****** *** ************** ************** ******
consensus_5268#1 ACGGGGCGCTCAAAAGCGTCACGTACACACA------CACATATT-TAACGATATCGAAA 323
consensus_5268#2 ACGGGGCGCTCAAAAGCGTCACGTACACACACACACACACATATT-TAACGATATCGNAA 248
consensus_5268#0 ACGGGGCGCTCAAAAGCGTCACGTACACACA------CACATATTCTAACGATATCGAAA 349
******************************* ******** *********** **
consensus_5268#1 ACAAGACTTAT-CCGTAGTTCACTAAGTGTTACATTTTTA--ATNTGGGAGGAACAGACG 380
consensus_5268#2 ACAAGACTTATACCGTAGTTCACTAAGTGTAACATACTTACAACTCTGGGAGGACACAAA 308
consensus_5268#0 ACAAGACTTAT-CCGTAGTTCACTAAGTGTTACATTTTTT--AATTGGGAGGAACAGACC 406
*********** ****************** **** ** * ** * *** *
consensus_5268#1 CCCGATACGTGTATGTGT-TGTACACACCCTTCACGGACAGCGAACGGCAGTTACAGCCA 439
consensus_5268#2 ATCGAACCGAACTCGTGTCTGTGTTTACAACACACGCACCTTCA----CGAAGACGAACG 364
consensus_5268#0 GCCGAT-CGTGT---TGTGTTTACACACCCTTCACGAA--GCGAACGGCAGTTACAG-CA 459
*** ** *** * * ** **** * * * ** *
consensus_5268#1 AGCATTATATACACATCCGGGATATNAACAGGAAAGCCNAACCACAAGTTTGN-CAGCTG 498
consensus_5268#2 GCCATGATTTCACCAGGCAAGACACTTATACTACCACATCCGCGCANATATACACGGCAA 424
consensus_5268#0 AGCATTATATA--CAATCCGGATAT--ACAGGAAAGCAAA--CACAAGT-TGT------A 506
*** ** * ** * ** * * * * * * ** * *
consensus_5268#1 TAGAA-ACAACTAGAGTCTCATCATACGCGAGCCGCGTAG--CATTCAAGTTACGATAAC 555
consensus_5268#2 CACAGCACAACACCAANAGATTTGTGCGTGTGACG---GA--CACCCAA----------- 468
consensus_5268#0 TAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTAATACATACAAAGTAACAGAAC 566
* * *** * * * ** * * ** ***
consensus_5268#1 AAG-----AAGGTAAACGAGGAAACGAGCGTNAAAGCTAATATTCCGGTATGGTACCAAA 610
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 CGGCGTTAATATTCGTTGTACAATCGGTAGATTTCGTAAACGAACCGGACCAATCGCCAG 626
consensus_5268#1 NCGGGTACGTTTATC-------CGANAGAGCGAACCCGGGCCCCANATCGGCCAGNAACT 663
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 ATTAGTCTGTCTANCGCGGTCCCAGTTGAAAGCAACTGAGGGATGCACTAATCGAGGCAA 686
consensus_5268#1 NNCGCGTCTNGTCTCAGCCGCCGGCGGCCCCCANAGCATCNGACAACGCCANNCACTAGC 723
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 GGCATACAATGATACGGCCAATTATAGGTGAACGACGATAGCGCAACGCT-TTCGTATAT 745
consensus_5268#1 ACAGGCACTGCACCCAAATCCCACGGCCCACCNGGGCANTA------------------- 764
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 GCAGCCAAGAGAACAAGTGTCTATTAACCAAAATAATAACGGAACGTTAATGATTAGCTT 805
consensus_5268#1 ------------------------------------------------------------
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 TATTATGTGTGCTTCGACAAATGCAATCAGCTGTGGCAGCTAAAAAAGGCGTTTGGAAGA 865
consensus_5268#1 ------------------------------------------------------------
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 GAAAGAGGCGTACGGGGAAAGAGGTAGAACAAATCATTATTGAAACAGTCCAAGCTTAGT 925
consensus_5268#1 ------------------------------------------------------------
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 TTATCCACCGTACAATATGCAATACACGGGTAATGATTTCGCTAGTAATGTTTTAAACGT 985
consensus_5268#1 ------------------------------------------------------------
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 TATCATCAACACATGCTTAGCAGGCAAGAGAACAAAACTCATGAAACACCAATTCGTTCA 1045
consensus_5268#1 ------------------------------------------------------------
consensus_5268#2 ------------------------------------------------------------
consensus_5268#0 GTATCCTGTGCTAAATTATCGTAAATGTGGGTGTTATCGTTTCTGGTAGCAAAGCTGACC 1105
consensus_5268#1 ---------------------------------------------------------
consensus_5268#2 ---------------------------------------------------------
consensus_5268#0 CCTTTTTCTTTGAAAAAGAATTTTAACGACCAATAGTGGTTCAGGTTAATCATATAT 1162
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||