cluster # 5271

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Anopheles gambiae
cluster # 5271 cluster # 5271 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5271#0 length = 678 sequences # 1

consensus_5271#1 length = 635 sequences # 3

consensusID : consensus_5271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [TTGCATGCTCGTAGCAGATTGCAGAGGTTGACAAGCACGATCCGGTCCAAAAACGACGTCGCACCTGATCGTCGTCAACCGCGCTCTCTCTGTCTCTCTCTCTCGGTCTCAGTCAATTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTTGGCAGGTCTGCTCTTCCTANCGGTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCATCGTCGCCGGGGCGACAAGCGTGTTGGGCGACTGCAAAATGTGACACTTACCAACGCGACCCTTTCCGCGATGGCTCGATACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTGCCAGATTGACCACTTCGAGGCCGGCACTGTTCGCGCTGCTGCAGCGCACAGACTGNCTGACCGCTTCGCNGGTGGCCAATCCCCTACGGTGTCGTTCCATTCCCAACAAGCGACTCGATACAGCCTCGNTGATCGAATGCCGAACCGGGGATCCTTGACGTACAGTACCGAATAGGTAGACCTGGATGGGTGGCACAGCTTGGGAAGCCCCCGGTAACGACAAAGCTTACCGCGAAGATTAACTGGGCAGCCATTTTCACAACCGGCCACAGNGCGGACTTGGGAAGNCGGNGCTTNGGCNCAAGCAGGCAGGCATAC]

[+] EMBL AL697221             [TTGCATGCTCGTAGCAGATTGCAGAGGTTGACAAGCACGATCCGGTCCAAAAACGACGTCGCACCTGATCGTCGTCAACCGCGCTCTCTCTGTCTCTCTCTCTCGGTCTCAGTCAATTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTTGGCAGGTCTGCTCTTCCTANCGGTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCATCGTCGCCGGGGCGACAAGCGTGTTGGGCGACTGCAAAATGTGACACTTACCAACGCGACCCTTTCCGCGATGGCTCGATACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTGCCAGATTGACCACTTCGAGGCCGGCACTGTTCGCGCTGCTGCAGCGCACAGACTGNCTGACCGCTTCGCNGGTGGCCAATCCCCTACGGTGTCGTTCCATTCCCAACAAGCGACTCGATACAGCCTCGNTGATCGAATGCCGAACCGGGGATCCTTGACGTACAGTACCGAATAGGTAGACCTGGATGGGTGGCACAGCTTGGGAAGCCCCCGGTAACGACAAAGCTTACCGCGAAGATTAACTGGGCAGCCATTTTCACAACCGGCCACAGNGCGGACTTGGGAAGNCGGNGCTTNGGCNCAAGCAGGCAGGCATAC]




>consensus_5271#0
TTGCATGCTCGTAGCAGATTGCAGAGGTTGACAAGCACGATCCGGTCCAAAAACGACGTC
GCACCTGATCGTCGTCAACCGCGCTCTCTCTGTCTCTCTCTCTCGGTCTCAGTCAATTGA
TAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTG
GCCTTGGCAGGTCTGCTCTTCCTANCGGTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCT
CATCATCGTCGCCGGGGCGACAAGCGTGTTGGGCGACTGCAAAATGTGACACTTACCAAC
GCGACCCTTTCCGCGATGGCTCGATACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTG
CCAGATTGACCACTTCGAGGCCGGCACTGTTCGCGCTGCTGCAGCGCACAGACTGNCTGA
CCGCTTCGCNGGTGGCCAATCCCCTACGGTGTCGTTCCATTCCCAACAAGCGACTCGATA
CAGCCTCGNTGATCGAATGCCGAACCGGGGATCCTTGACGTACAGTACCGAATAGGTAGA
CCTGGATGGGTGGCACAGCTTGGGAAGCCCCCGGTAACGACAAAGCTTACCGCGAAGATT
AACTGGGCAGCCATTTTCACAACCGGCCACAGNGCGGACTTGGGAAGNCGGNGCTTNGGC
NCAAGCAGGCAGGCATAC

consensusID : consensus_5271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 635
fasta sequence

                              [CCGCCCACGCGTCCGAACCGGCAAAGCAACGATCCGGTCCAAAAACGACGTCGCACCGATCGTCGTCAACCGCACTCTCTCTCTCTCTCTGTCTCTCTCGGTCTCAGTCAATTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTTGGCAGGTCTGCTGATCCTAGCGTTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCATCGTTGCCGGGGCGGCGAGCGTGGTGTTGGCCGACTGCAAAATGTGACACTTACCAACGCGACCCTTTCCGCGATGGCTCAAACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTGCCAGATT-GACCACTTCGGGCCGGCACTG-TTCGCGCTGCTGCAGCGCACAGACTGTCTG-ACGCTTCGCGGTGGCCACATCCCCTCCGTGTCGTTCCATTCCCACA-CGCTCGATACGCTCGTGATCGA-TGCGACCCGGTCTGCGAACGTTCGA-TGTA-ACCGGCGGGCCCGGTGCGGCCCCGTACGAAAAGCTACGAATACTGCACATCACACGCACGCGGGCTGGAGCGGCTACCAGCGCGTCTCTCGCTGCTGGTGGGCCTAAAACGGTTGGACCTGTC]

[+] EMBL BM576805             [CCGCCCACGCGTCCGAACCGGCAAAGCAACGATCCGGTCCAAAAACGACGTCGCACCGATCGTCGTCAACCGCACTCTCTCTCTCTCTCTGTCTCTCTCGGTCTCAGTCAATTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTTGGCAGGTCTGCTGATCCTAGCGTTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCATCGTTGCCGGGGCGGCGAGCGTGGTGTTGGCCGACTGCAAAATGTGACACTTACCAACGCGACCCTTTCCGCGATGGCTCAAACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTGCCAGATTAGACCACTTCGGGCCGGCACTG TTCGCGCTGCTGCAGCGCACAGACTGTCTGAACGCTTCGCGGTGGCCACATCCCCTCCGTGTCGTTCCATTCCCACA CGCTCGATACGCTCGTGATCGA TGCGACCGGGTCTGCGAACGTTCGAGGGTA ACCGGCGGGCCCGGTGCGGCCCCGTACGAAAAGCTACGAATACTGCACATCACACGCACGCGGGCTGGAGCGGCTACCAGCGCGTCTCTCGCTGCTGGTGG                      ]
[+] EMBL BM576709             [           ccgGAACCGGCAAAGCAACGATCCGGTCCAAAAACGACGTCGCACCGATCGTCGTCAACCGCACTCTCTCTCTCTCTCTGTCTCTCTCGGTCTCAGTCAATTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTTGGCAGGTCTGCTGATCCTAGCGTTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCATCGTTGCCGGGGCGGCGAGCGTGGTGTTGGCCGACTGCAAAATGTGACACTTACCAACGCGACCCTTTCCGCGATGGCTCAAACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTGCCAGATT GACCACTTCGGGCCGGCACTG TTCGCGCTGCTGCAGCGCACAGACTGTCTG ACGCTTCGCGGTGGCCACATCCCCTCCGTGTCGTTCCATTCCCACA CGCTCGATACGCTCGTGATCGA TGCGA CCGGTCTGCGAACGTTCGA TGTA GCCGGCGGGCCCGGTGCGGCCCCGTACGAAAAGCTACGAATACTGCACATCACACGCACGC GGCTGGAGCGGCTACCAGCGCGCCTCTCGCTGCTGGTGGGCCTAAAACGGTTGGACCTGTC]
[+] EMBL BX624306             [                                                                                  cgcgCTCTCTCTCTCTCTGTCTCAGTCAATTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTTGGCAGGTCTGCTGTTCCTAGCGGTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCATCGTCGCCGGGGCGACAAGC   GTGTTGGCCGACTGCAAAATGTGACACTTACCAACGCGACCCTTTCCGCGATGGCGCAAACGGGCGGTGCCGGTGAACTCTCGCTCGACGGCTGCCAGATT GACCACTTCGGGCCGGCACTGTTTCGCGCTGCTGCAGCGCACAGACTGTCTG ACGCTTCGCGGTGGCCACATCTCCTCCGTNTCGTTCCATTCCCACANCGCTCGATACGCTCGTGATCGATTGCGACCCGGNNTGCGTACGTTCGA TGTATCCCGGCGGGgc                                                                                                                ]




>consensus_5271#1
CCGCCCACGCGTCCGAACCGGCAAAGCAACGATCCGGTCCAAAAACGACGTCGCACCGAT
CGTCGTCAACCGCACTCTCTCTCTCTCTCTGTCTCTCTCGGTCTCAGTCAATTGATAACA
AACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACTGCTGGCCTT
GGCAGGTCTGCTGATCCTAGCGTTGGTAGGCAGTGTGTACGGCCGTGCCGTGCCTCATCA
TCGTTGCCGGGGCGGCGAGCGTGGTGTTGGCCGACTGCAAAATGTGACACTTACCAACGC
GACCCTTTCCGCGATGGCTCAAACGGGCGGTGGCGGTGAACTCTCGCTCGACGGCTGCCA
GATTGACCACTTCGGGCCGGCACTGTTCGCGCTGCTGCAGCGCACAGACTGTCTGACGCT
TCGCGGTGGCCACATCCCCTCCGTGTCGTTCCATTCCCACACGCTCGATACGCTCGTGAT
CGATGCGACCCGGTCTGCGAACGTTCGATGTAACCGGCGGGCCCGGTGCGGCCCCGTACG
AAAAGCTACGAATACTGCACATCACACGCACGCGGGCTGGAGCGGCTACCAGCGCGTCTC
TCGCTGCTGGTGGGCCTAAAACGGTTGGACCTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5271#0      TTGCATGCTCGTAGCAGATTGCAGAGGTTGACAAGCACGATCCGGTCCAAAAACGACGTC 60
consensus_5271#1      CCGCCCACGCGTCCGAACCGGCAAAG-----CA---ACGATCCGGTCCAAAAACGACGTC 52
                        **   * ***   *    *** **     **   ************************

consensus_5271#0      GCACCTGATCGTCGTCAACCGCGCTCTCTCTGTCTCTCT----CTCTCGGTCTCAGTCAA 116
consensus_5271#1      GCACC-GATCGTCGTCAACCGCACTCTCTCTCTCTCTCTGTCTCTCTCGGTCTCAGTCAA 111
                      ***** **************** ******** *******    *****************

consensus_5271#0      TTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACT 176
consensus_5271#1      TTGATAACAAACAACGCAGGAGGCCATGTTGACGATGGCACGCTACCGGGACGTGATACT 171
                      ************************************************************

consensus_5271#0      GCTGGCCTTGGCAGGTCTGCTCTTCCTANCGGTGGTAGGCAGTGTGTACGGCCGTGCCGT 236
consensus_5271#1      GCTGGCCTTGGCAGGTCTGCTGATCCTAGCGTTGGTAGGCAGTGTGTACGGCCGTGCCGT 231
                      *********************  ***** ** ****************************

consensus_5271#0      GCCTCATCATCGTCGCCGGGGCGACAAGCGTG---TTGGGCGACTGCAAAATGTGACACT 293
consensus_5271#1      GCCTCATCATCGTTGCCGGGGCGGCGAGCGTGGTGTTGGCCGACTGCAAAATGTGACACT 291
                      ************* ********* * ******   **** ********************

consensus_5271#0      TACCAACGCGACCCTTTCCGCGATGGCTCGATACGGGCGGTGGCGGTGAACTCTCGCTCG 353
consensus_5271#1      TACCAACGCGACCCTTTCCGCGATGGCTCAA-ACGGGCGGTGGCGGTGAACTCTCGCTCG 350
                      ***************************** * ****************************

consensus_5271#0      ACGGCTGCCAGATTGACCACTTCGAGGCCGGCACTGTTCGCGCTGCTGCAGCGCACAGAC 413
consensus_5271#1      ACGGCTGCCAGATTGACCACTTCG-GGCCGGCACTGTTCGCGCTGCTGCAGCGCACAGAC 409
                      ************************ ***********************************

consensus_5271#0      TGNCTGACCGCTTCGCNGGTGGCCAATCCCCTACGGTGTCGTTCCATTCCCAACAAGCGA 473
consensus_5271#1      TGTCTGAC-GCTTCGCGG-TGGCCACATCCCCTCCGTGTCGTTCCATTCCCA-CACGC-- 464
                      ** ***** ******* * ******   ***  * ***************** ** **  

consensus_5271#0      CTCGATACAGCCTCGNTGATCGAATGCCGAACCGGGGATCCTTGACGTACAGTACCGAAT 533
consensus_5271#1      -TCGATACGCTCGTGATCGATGCGACCCGGTCTGCGAACGTTCGATGTA---------AC 514
                       *******   *  * *    *    ***  * * * *   * ** ***         * 

consensus_5271#0      AGGTAGACCTGGATGGGTGGCACAGCTTGGGAAGCCCCCGGTAACGACAAAGCTTAC-CG 592
consensus_5271#1      CGGCGGGCCCGGT---GCGGCCCCGTACGAAAAGCTACGAATACTG-CACATCACACGCA 570
                       **  * ** **    * *** * *   *  ****  *   **  * ** * *  ** * 

consensus_5271#0      CGAAGATTAACTGGGCAGCCATTTTCACAACCGGCCACAGNGCGGACTTGGGAAGNCGGN 652
consensus_5271#1      CGCGGGCTGGAGCGGCTACCAGCG-CGTCTCTCGCTGCTGG-TGGGCCTAAAACGGTTGG 628
                      **  *  *     ***  ***    *    *  **  * *   ** * *   * *   * 

consensus_5271#0      GCTTNGGCNCAAGCAGGCAGGCATAC 678
consensus_5271#1      ACCTGTC------------------- 635
                       * *