cluster # 5277

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Anopheles gambiae
cluster # 5277 cluster # 5277 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5277#0 length = 998 sequences # 2

consensus_5277#1 length = 535 sequences # 1
consensus_5277#2 length = 415 sequences # 1

consensusID : consensus_5277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 998
fasta sequence

                              [CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAACAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTATAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGAAACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAACATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAAACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTTGAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGTAGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATGTGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCCACTAATAAATTAGCTCAGCTACACACTCTCTCACAC]

[+] EMBL BM637268             [CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAACAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTATAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGAAACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAACATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAAACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTTGAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGTAGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATGTGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCT                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM631173             [                                                                                                                                                                                                                                                                                                                                                   ccgAAACGAGAAAAAGGCGAAACAAAGATACAAAACTCAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTTGAAACCGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGTAGTGCAACTGGGGTAAGAGCCGACGGCAAGGCGAGAGCAGACGGGAAGTAGTGTTGTGTGTGTCTGCGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCCAAGTCCGTAGCAGTACTAGTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCCACTAATAAATTAGCTCAGCTACACACTCTCTCACAC]




>consensus_5277#0
CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAA
CAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAAC
GAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTA
TAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGA
AACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAA
CATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAA
ACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTT
GAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGT
AGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATG
TGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTC
TTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTA
GTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATTGCA
GAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACACAG
TCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCAGCAG
TTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACACAGTGATACAACA
GCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAAT
CCACTAATAAATTAGCTCAGCTACACACTCTCTCACAC

consensusID : consensus_5277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTGTGAGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCATTAGTAGCAGTAGTAGGTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCAGAATAAAAAAACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCACACCGCAACCCCCGGGGCCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT]

[+] EMBL BX617626             [GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTGTGAGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCATTAGTAGCAGTAGTAGGTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCAGAATAAAAAAACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCACACCGCAACCCCCGGGGCCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT]




>consensus_5277#1
GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTGTGAGTCTGAGGGGCGGGGCGCAAA
ATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTA
ATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCATTAGTAGCAGTAGTAG
GTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAA
AATTACAAAAAAGAAGCAGAATAAAAAAACACACACAGTCCTTTTCTTTTGTAGTAGTTT
TGCGCAAACGAAAAACGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCT
ACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAA
GCAAGCCCAGCAAGCAAAAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCA
CACCGCAACCCCCGGGGCCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT

consensusID : consensus_5277#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [CCCCAGGCTNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGNGTGTCGACNAAGAGGAANGGGAACAGCAACTTAAGTATACTTAAGAAGAACAACTAAAGCGGTCAGCCAGCGCAATTGAGCGCGAGAGCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTTGGGGAAACAAAATTAAACAAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGGCACACCAACACTCNACAACACACCGCGGCGGGGGGGTTTTAACAAAACACACACCCAAAAAAACCCACNTTTGGGGGNNACGGGCAANANAACACCACACCACGGGGGGACNCGGGCCAAACAACAACNC]

[+] EMBL AL697455             [CCCCAGGCTNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGNGTGTCGACNAAGAGGAANGGGAACAGCAACTTAAGTATACTTAAGAAGAACAACTAAAGCGGTCAGCCAGCGCAATTGAGCGCGAGAGCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTTGGGGAAACAAAATTAAACAAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGGCACACCAACACTCNACAACACACCGCGGCGGGGGGGTTTTAACAAAACACACACCCAAAAAAACCCACNTTTGGGGGNNACGGGCAANANAACACCACACCACGGGGGGACNCGGGCCAAACAACAACNC]




>consensus_5277#2
CCCCAGGCTNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACA
TAGCGAACGAATCGAACCAGAAGAAAAGAAGGNGTGTCGACNAAGAGGAANGGGAACAGC
AACTTAAGTATACTTAAGAAGAACAACTAAAGCGGTCAGCCAGCGCAATTGAGCGCGAGA
GCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTTGGGGAAACAAAATTAAAC
AAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGGCACACCAACACTCNA
CAACACACCGCGGCGGGGGGGTTTTAACAAAACACACACCCAAAAAAACCCACNTTTGGG
GGNNACGGGCAANANAACACCACACCACGGGGGGACNCGGGCCAAACAACAACNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5277#0      CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAA 60
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      CAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAAC 120
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      GAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTA 180
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      TAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGA 240
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      AACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAA 300
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      CATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAA 360
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      ACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTT 420
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      GAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGT 480
consensus_5277#1      ------------------------------------------------------------
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      AGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATG 540
consensus_5277#1      ------------------------GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTG 36
consensus_5277#2      ------------------------------------------------------------
                                                                                  

consensus_5277#0      TG--TCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGT 598
consensus_5277#1      TGAGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGT 96
consensus_5277#2      ----------------------------------------------------CCCCAGGC 8
                                                                                * 

consensus_5277#0      TCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTC-CAGTCTAAGTCCGTAGCAGTA 657
consensus_5277#1      TCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTC-CAGTCTAAGTCCGTAGCAGTA 155
consensus_5277#2      TNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACATAGCGA-A 67
                      *    * *  * * *       *     ** *     *  ** *  *** * ****   *

consensus_5277#0      CTAGTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATT 717
consensus_5277#1      CTAGTAGCATTAGTAGCAGTAGTAGGTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATT 215
consensus_5277#2      CGAATCGAACCAGAAG-AAAAGAAGGNGTGTCGACNAAGAGGAANGGGA-----ACAGCA 121
                      * * * * *  ** ** *  ** *** *        * * *  * **        *    

consensus_5277#0      GCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACA 777
consensus_5277#1      GCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCAGAATAAAAAAACACACA 275
consensus_5277#2      ACTTAAGTATACTTAAGAAGAACA--ACTAAAGCGGTCAGCCAGCGCAATTGAGCGCG-A 178
                       *  *  * ** ******  * **  * ** *      *  * *   **     * *  *

consensus_5277#0      CAGTCCTTTTCTTTTGTAGTAGTTT-TGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCA 836
consensus_5277#1      CAGTCCTTTTCTTTTGTAGTAGTTT-TGCGCAAACGAAAAACGC------------CTCA 322
consensus_5277#2      GAGCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTT-------------GGG 225
                       **   **  *      ** *     *  ***********                    

consensus_5277#0      GCAGTTACGTTTGCCGCAAC--AAACAAACAAACAAACCTACACACACACACAC-AGTGA 893
consensus_5277#1      GCAGTTACGTTTGCCGCAAC--AAACAAACAAACAAACCTACACACACACAC---AGTGA 377
consensus_5277#2      GAAACAAAATTAAACAAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGG 285
                      * *   *  **   *  ***  ** ****  **    **  ******   **    * * 

consensus_5277#0      TACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAA 953
consensus_5277#1      TACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAA 437
consensus_5277#2      CACACCAAC-ACTCNACAACACACCGCGGCGGGGGGGTTTTAACAAAACACA--CACCCA 342
                       *** ** *  ***     * * *    *  **        **  ** * **   * * *

consensus_5277#0      AAGAAATCCACTAATA-AATTAGCTCAGCTACACACTCTCTCACAC-------------- 998
consensus_5277#1      AAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCACACCGCAACCCCCGGGG 497
consensus_5277#2      AAAAAACCCACNTTTGGGGGNNACG-GGCAANANAACACCACACCACGGGGGGACNCGGG 401
                      ** *** * **   *        *   ** * * *    * ***                

consensus_5277#0      --------------------------------------
consensus_5277#1      CCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT 535
consensus_5277#2      CCAAACAACAACNC------------------------ 415