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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence
[GATCGCCCAGGNTGACTTGTTTGGGATTGGCACTGTGACTTTGCATTTGTTGTTGGTTTTGCCGGACTGTTTGGGGGTGTGGGGCGTACCGAAGTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGCAAAAAA-CCCTCA-CCCCCACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAAAAAGTAAACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGTTTCTTCCAAAGCAAGCGAGCAGTAAAACGAAAATTGACGCTCTACCTCCTCCAAATTCCCTTCATTCCTTGCCCTCCCCTTCCCCCCACCCTTCCTCTTCCCTGGACAAATGTATCGAATTGGCAATGAACGATTAGGCAACCCGATTGGCAACCCGTACTACAACAAAAGTGAGAGAAGAAAAAAAAGGAGATATTTGCGCTCCCTGTCTAGCAGCAGCATTTGCGTTCGCGTTTGCCACCCGCAGGTTGCGTTTACCGAACTGTAGCGAAAAAAAAAAAAGCGCAGCAAAACCCTTTCACCCCCTGTCCCAAGTCTGGTGGGGTCCCAAACATCAGGGATGTAGCCGTAAGGTCAATGCCGAAAATGACAGCAGGCGGGCAGGCGGGAAGCGGCGGCGTTCCATCTGAGCGTCTAGTGTTGGGCATGCGGGAGTGCATACCTTGCAGGCGCGTGAATTCTTTTAAGTGAAGCGCGTAGCAGAGCCGCGCCCGTTC]
[+] EMBL AL697485 [GATCGCCCAGGNTGACTTGTTTGGGATTGGCACTGTGACTTTGCATTTGTTGTTGGTTTTGCCGGACTGTTTGGGGGTGTGGGGCGTACCGAAGTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGCAAAAAA CCCTCA CCCCCACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAAAAAGTAAACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGTTTCTTCCAAAGCAAG ]
[+] EMBL BM650982 [ ccgGTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGCAAAAAACCCCTCACCCCCCACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAAAAAGTAAACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGTTTCTTCCAAAGCAAGCGAGCAGTAAAACGAAAATTGACGCTCTACCTCCTCCAAATTCCCTTCATTCCTTGCCCTCCCCTTCCCCCCACCCTTCCTCTTCCCTGGACAAATGTATCGAATTGGCAATGAACGATTAGGCAACCCGATTGGCAACCCGTACTACAACAAAAGTGAGAGAAGAAAAAAAAGGAGATATTTGCGCTCCCTGTCTAGCAGCAGCATTTGCGTTCGCGTTTGCCACCCGCAGGTTGCGTTTACCGAACTGTAGCGAAAAAAAAAAAAGCGCAGCAAAACCCTTTCACCCCCTGTCCCAAGTCTGGTGGGGTCCCAAACATCAGGGATGTAGCCGTAAGGTCAATGCCGAAAATGACAGCAGGCGGGCAGGCGGGAAGCGGCGGCGTTCCATCTGAGCGTCTAGTGTTGGGCATGCGGGAGTGCATACCTTGCAGGCGCGTGAATTCTTTTAAGTGAAGCGCGTAGCAGAGCCGCGCCCGTTC]
consensusID : consensus_5279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[GTCNTCACTGAACTGTGTCACTCAATCATTCAAGATTCTAAATTTTTATAGCAAGAATATTAGTAAAAAAATGGAACAAATAAAACCCAACCAACAAAACAAAATCGATGGGCGACTTGTTTTGGGAATTGGCACTGTGAACTTTTTGCATTTTGTTGTTGGTTTTGCCGGACTGTTTGGGGGTGTGGGGCGTACCGAAGTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGCAAAAAACCCCTCACCCCCCACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAAAAAGTAAACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGTTTCTTCCAAAGCAAGCGAGCAGTAAAACGAAAATTGACGCTCTACCTCCTCCAAATTCCCTTCATTCCTTGCCCTCCCCTTCCCCCCCCTCCTTGAGCCACTGTTTTAAACGAAATGGAGCAGATCCGCCGAACCAGCAACAGCACTCTCCAAACACGGACACACACACACACACTTGTACACAAGTACAACATAAATGCACTGATAGAAGATAAAATGGCCTCCCTCCCCGGAAAACCCAATTTTCCTGTTGCGGAACGCCCGTTTCATTCTTATGACTGTATGCGTTTTTTGGATAGTTTTTACNACCCAAATGATAATGATTAAAAAAA]
[+] EMBL BX622896 [GTCNTCACTGAACTGTGTCACTCAATCATTCAAGATTCTAAATTTTTATAGCAAGAATATTAGTAAAAAAATGGAACAAATAAAACCCAACCAACAAAACAAAATCGATGGGCGACTTGTTTTGGGAATTGGCACTGTGAACTTTTTGCATTTTGTTGTTGGTTTTGCCGGACTGTTTGGGGGTGTGGGGCGTACCGAAGTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGCAAAAAACCCCTCACCCCCCACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAAAAAGTAAACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGTTTCTTCCAAAGCAAGCGAGCAGTAAAACGAAAATTGACGCTCTACCTCCTCCAAATTCCCTTCATTCCTTGCCCTCCCCTTCCCCCCCCTCCTTGAGCCACTGTTTTAAACGAAATGGAGCAGATCCGCCGAACCAGCAACAGCACTCTCCAAACACGGACACACACACACACACTTGTACACAAGTACAACATAAATGCACTGATAGAAGATAAAATGGCCTCCCTCCCCGGAAAACCCAATTTTCCTGTTGCGGAACGCCCGTTTCATTCTTATGACTGTATGCGTTTTTTGGATAGTTTTTACNACCCAAATGATAATGATTAAAAAAA]
consensusID : consensus_5279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[CACGTATTTGTAGCATCATCCCTAGCAACTTTAACAAAGATATATACATATATAAAAGAACAGATAGACAAATAGAGAGAGAGAGAGAGAAAAAAAAGAGAGAGAAAAAGAAAAAGAGAAAAAGAGAGAAGGCAAGTTGGTGAATGGATTGCAGGGAAAGAGGCGTCATGATTATCGAATCAACTAAAACACACTTTAAACACACCTACACTTAACTGTAATCCTATGCACACACACACACACACGTTCACACATATACACTCTCAAACACGTTGGAAAATAGCAAATTTTTTGCATATGCTCAATGAAGGTTTTCGCGTGGAAACCTCTCCATTTCGCTCCTCCCTTTGAATCTTTCCCTTTTGAAATTTATCCCTTCCCATTCATACTACCCCCCCCCCCTCCTTGAGCCACTGTTTTAAACGAAATGGAGCAGATCCGCCGAACCAGCAACAGCACTCTCCAAACACGGACACACACACACACACTTGTACACAAGTACAACATAAATGCACTGATAGAAGATAAAATGGCCTCCCTCCCCGGAAAACCCAATTTTCCTGTTGCGGAACGCCCGTTTCATTCTTATGACTGTATGCGTTTTTTGGATAGTTTTTACAACCCAAATGATAATGATTAAAAAAAACC]
[+] EMBL BX625431 [CACGTATTTGTAGCATCATCCCTAGCAACTTTAACAAAGATATATACATATATAAAAGAACAGATAGACAAATAGAGAGAGAGAGAGAGAAAAAAAAGAGAGAGAAAAAGAAAAAGAGAAAAAGAGAGAAGGCAAGTTGGTGAATGGATTGCAGGGAAAGAGGCGTCATGATTATCGAATCAACTAAAACACACTTTAAACACACCTACACTTAACTGTAATCCTATGCACACACACACACACACGTTCACACATATACACTCTCAAACACGTTGGAAAATAGCAAATTTTTTGCATATGCTCAATGAAGGTTTTCGCGTGGAAACCTCTCCATTTCGCTCCTCCCTTTGAATCTTTCCCTTTTGAAATTTATCCCTTCCCATTCATACTACCCCCCCCCCCTCCTTGAGCCACTGTTTTAAACGAAATGGAGCAGATCCGCCGAACCAGCAACAGCACTCTCCAAACACGGACACACACACACACACTTGTACACAAGTACAACATAAATGCACTGATAGAAGATAAAATGGCCTCCCTCCCCGGAAAACCCAATTTTCCTGTTGCGGAACGCCCGTTTCATTCTTATGACTGTATGCGTTTTTTGGATAGTTTTTACAACCCAAATGATAATGATTAAAAAAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5279#0 ------------------------------------------------------------
consensus_5279#1 GTCNTCACTGAACTGTGTCACTCAATCATTCAAGATTCTAAATTTTTATAGCAAGAATAT 60
consensus_5279#2 -------------------------------------------------CACGTATTTGT 11
consensus_5279#0 ------------------------------------------GATCGCCCAGGNTGACTT 18
consensus_5279#1 TAGTAAAAAAATGGAACAAATAAAACCCAACCAACAAAACAAAATCGAT--GGGCGACTT 118
consensus_5279#2 AGCATCATCCCTAGCAACTTTAACAAAGATATATACATATATAAAAGAACAGATAGACAA 71
* * * ***
consensus_5279#0 GTTT--GGGATTGGCACTGTGA---CTTTGCATTT-GTTGTTGGTTTTGCCGGACTGTTT 72
consensus_5279#1 GTTTTGGGAATTGGCACTGTGAACTTTTTGCATTTTGTTGTTGGTTTTGCCGGACTGTTT 178
consensus_5279#2 ATAG-AGAGAGAGAGAGAGAAA---AAAAAGAGAGAGAAAAAGAAAAAGAGAAAAAGAGA 127
* * * * * * * * * * * * *
consensus_5279#0 GGGGGTGTGG-GGCGTACCGAA-GTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGC 130
consensus_5279#1 GGGGGTGTGG-GGCGTACCGAA-GTGGGCAGAAGTGTGTTCCCATCAATTTGGAGTAGGC 236
consensus_5279#2 GAAGGCAAGTTGGTGAATGGATTGCAGGGAAAGAGGCGTCATGATTA--TCGAATCAACT 185
* ** * ** * * ** * ** * * * ** ** * * * * *
consensus_5279#0 AAAAAACCC-TCACCCCC-ACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAA 188
consensus_5279#1 AAAAAACCCCTCACCCCCCACAACGGTTAGTTAGATAGCAGAAAGTGGAGCTGTAAAAAA 296
consensus_5279#2 AAAACACACTTTAAACACACCTACACTTAACT--GTAATCCTATGCACACACACACACAC 243
**** ** * * * * * * ** *** * ** * * * * * *
consensus_5279#0 AAAGTAA-ACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGT- 246
consensus_5279#1 AAAGTAA-ACGCACACTTGTGCAGGTTCGTCGCTCAACATTTTCCAGTTTGCTGCGTGT- 354
consensus_5279#2 ACGTTCACACATATACACTCTCAAACACGTTG---GAAAATAGCAAATTTTTTGCATATG 300
* * * ** * ** ** *** * * * * * * *** *** * *
consensus_5279#0 TTCTTCCAAAGCAAGCGAGCAGTAAAACGAAAATTGACGCTCTACCTCCTCCAAATTCCC 306
consensus_5279#1 TTCTTCCAAAGCAAGCGAGCAGTAAAACGAAAATTGACGCTCTACCTCCTCCAAATTCCC 414
consensus_5279#2 CTCAATGAAGGTTTTCGCGTGGAAACCTCTCCATTT-CGCTCCTCCCTTTGAATCTTTCC 359
** ** * ** * * ** *** ***** ** * * ** **
consensus_5279#0 TTCAT----TCCTTGCCCTCCCCTTCCCCCCACCCTTCCT-CTTCCCTGGACAAATGTAT 361
consensus_5279#1 TTCAT----TCCTTGCCCTCCCCTTCCCCCC----------CCTCCTTGAGCCACTGTTT 460
consensus_5279#2 CTTTTGAAATTTATCCCTTCCCATTCATACTACCCCCCCCCCCTCCTTGAGCCACTGTTT 419
* * * * ** **** *** * * *** ** * * *** *
consensus_5279#0 CGAATTGGCAATGAACGATTAGGCAACCCGATTGGCAACCCGTACTACAACAAAAGTGAG 421
consensus_5279#1 TAAAC-GAAATGGAGCAGATCCGCCGAACCAGCAACAGCACTCTCCA-AACACGGACACA 518
consensus_5279#2 TAAAC-GAAATGGAGCAGATCCGCCGAACCAGCAACAGCACTCTCCA-AACACGGACACA 477
** * * ** * * ** * * ** * * * * ****
consensus_5279#0 AGAAGAAAAAAAAGGAGATATTTGCGCTCCCTGTCTAGCAGCAGCATTTGCGTTCGCGTT 481
consensus_5279#1 CACACACACACTTGTACACAAGTACAACATAAATGCACTGATAGAAGATAAAATGGCCTC 578
consensus_5279#2 CACACACACACTTGTACACAAGTACAACATAAATGCACTGATAGAAGATAAAATGGCCTC 537
* * * * * * * * * * * * ** * * * ** *
consensus_5279#0 TGCCACCCGCAGGTTGCGTTTACCGAACTGTAGCGAAAAAAAAAAAAGCGCAGCAAAACC 541
consensus_5279#1 CCTCCCCGGAAAACCCAATTTTCC----TGTTGCGGAA----------CGC-------CC 617
consensus_5279#2 CCTCCCCGGAAAACCCAATTTTCC----TGTTGCGGAA----------CGC-------CC 576
* ** * * *** ** *** *** ** *** **
consensus_5279#0 CTTTCACCCCCTGTCCCAAGTCTGGTGGGGTCCCAAACATCAGGGATGTAGCCGTAAGGT 601
consensus_5279#1 GTTTCAT------TCTTATGACTGTATGCGTTTTTTGGATAGTTTTTACNACCCAAATGA 671
consensus_5279#2 GTTTCAT------TCTTATGACTGTATGCGTTTTTTGGATAGTTTTTACAACCCAAATGA 630
***** ** * * *** * ** ** * ** ** *
consensus_5279#0 CAATGCCGAAAATGACAGCAGGCGGGCAGGCGGGAAGCGGCGGCGTTCCATCTGAGCGTC 661
consensus_5279#1 TAATGATTAAAAAAA--------------------------------------------- 686
consensus_5279#2 TAATGATTAAAAAAAACC------------------------------------------ 648
**** **** *
consensus_5279#0 TAGTGTTGGGCATGCGGGAGTGCATACCTTGCAGGCGCGTGAATTCTTTTAAGTGAAGCG 721
consensus_5279#1 ------------------------------------------------------------
consensus_5279#2 ------------------------------------------------------------
consensus_5279#0 CGTAGCAGAGCCGCGCCCGTTC 743
consensus_5279#1 ----------------------
consensus_5279#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||