These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 852 fasta sequence [CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTAAGCAGTTTTGCT] [+] EMBL BM614614 [CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACA ] [+] EMBL AL697573 [ caggctttaCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGCCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGT ] [+] EMBL BX618677 [ TGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTAAGCAGTTTTGCT] consensusID : consensus_5281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAAAAAANTAAAAAAAANGCAGCATG] [-] EMBL BX466677 [ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAAAAAANTAAAAAAAANGCAGCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5281#0 CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATAT 60 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 GGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGC 120 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 CCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATC-AGGAGG 179 consensus_5281#1 ----------------------------------------------ACCTATCCAGGAGG 14 * * *** ****** consensus_5281#0 TCATCGCGGAGCACGAGCGC-AAGAAGCTGCCCGC-AAACTGGGAATCCCGTCAGCGGCA 237 consensus_5281#1 TCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCA 74 ******************** ************** *************** ******** consensus_5281#0 AGCC-GAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAA-GGGCTC 295 consensus_5281#1 AGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTN 134 **** ********************************************* ** ***** consensus_5281#0 GACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAA 355 consensus_5281#1 GACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAA 194 ********************************* ************* ************ consensus_5281#0 CTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGAC-TACGAGGCACAAACGGC 414 consensus_5281#1 CTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGC 254 ****************************************** ***************** consensus_5281#0 ACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGA 474 consensus_5281#1 ACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGA 314 ************************************************************ consensus_5281#0 GCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCT 534 consensus_5281#1 GCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCT 374 ************************************************************ consensus_5281#0 GCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGC 594 consensus_5281#1 GCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGC 434 ************************************************************ consensus_5281#0 TAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACAT 654 consensus_5281#1 TAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACAT 494 ************************************************************ consensus_5281#0 TAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGC 714 consensus_5281#1 TAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGC 554 ************************************************************ consensus_5281#0 AGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCT 774 consensus_5281#1 AGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCT 614 ******************************************** *************** consensus_5281#0 TATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAA 834 consensus_5281#1 TATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAA---AAAAANTAA 671 ***** ****************************************** * ** *** consensus_5281#0 GTTGTAAGCAGTTTTGCT 852 consensus_5281#1 AAAAAANGCAGCATG--- 686 * **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||