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Anopheles gambiae
cluster # 5281 cluster # 5281       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5281#0 length = 852 sequences # 3  
consensus_5281#1 length = 686 sequences # 1  

consensusID : consensus_5281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 852
fasta sequence
                              [CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTAAGCAGTTTTGCT]

[+] EMBL BM614614             [CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACA                                                                                                                                                                                                       ]
[+] EMBL AL697573             [      caggctttaCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATATGGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGCCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGT                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX618677             [                                                                                                         TGCCGAGCGGATGGCCCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGTCATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTAAGCAGTTTTGCT]


>consensus_5281#0 CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATAT GGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGC CCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATCAGGAGGT CATCGCGGAGCACGAGCGCAAGAAGCTGCCCGCAAACTGGGAATCCCGTCAGCGGCAAGC CGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAAGGGCTCGACTA CAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAACTGAA GGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACTACGAGGCACAAACGGCACGGCA GTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAA GGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAA GGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCG CAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGA GAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAAT CAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCTTATTTT AATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAAGTTGTA AGCAGTTTTGCT



consensusID : consensus_5281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAAAAAANTAAAAAAAANGCAGCATG]

[-] EMBL BX466677             [ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAAAAAANTAAAAAAAANGCAGCATG]


>consensus_5281#1 ACCTATCCAGGAGGTCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAA TCCCGCCAGCGGCAAGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGA AGAGAAACGGGCTNGACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTG ACCGCATCGACAAACTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTAC GAGGCACAAACGGCACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTG GTCAAGTATGAGGAGCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTG ATACTGCAGGGTCTGCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTG GAGGGCCAGATTGCTAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCT GACATTGATTACATTAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTAT GGCGAGCACACGGCAGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTG TAAAAAGAACGTCTTATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAAT AAAAAAANTAAAAAAAANGCAGCATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5281#0      CCGGAAACAACGCAGCAGCAGTTTTAATCGTGTTTTGCTTGTAAATCAGACAGTAAATAT 60
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      GGCTGAAACTGCGACAACTTCCTCGAAAACGTTTGCCGAAAAGCATGCCGAGCGGATGGC 120
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      CCGATTGAAGCAACTGCACACACAGCGTAACGAGGCCCGCGCCAGCAACCATC-AGGAGG 179
consensus_5281#1      ----------------------------------------------ACCTATCCAGGAGG 14
                                                                    * * *** ******

consensus_5281#0      TCATCGCGGAGCACGAGCGC-AAGAAGCTGCCCGC-AAACTGGGAATCCCGTCAGCGGCA 237
consensus_5281#1      TCATCGCGGAGCACGAGCGCCAAGAAGCTGCCCGCGAAACTGGGAATCCCGCCAGCGGCA 74
                      ******************** ************** *************** ********

consensus_5281#0      AGCC-GAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGGAA-GGGCTC 295
consensus_5281#1      AGCCCGAATGGCTGATGGGAGACCTGAAGGCGCGCACTGAGGCGGAAGAGAAACGGGCTN 134
                      **** ********************************************* ** ***** 

consensus_5281#0      GACTACAATCGGGTGAAGATGCTGAACGTGTCCGCGGCGGAGGCTGATCGCATCGACAAA 355
consensus_5281#1      GACTACAATCGGGTGAAGATGCTGAACGTGTCCCCGGCGGAGGCTGACCGCATCGACAAA 194
                      ********************************* ************* ************

consensus_5281#0      CTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGAC-TACGAGGCACAAACGGC 414
consensus_5281#1      CTGAAGGCCAAGAAGCGCAACGCAGATCCGGGCTTCTCCGACCTACGAGGCACAAACGGC 254
                      ****************************************** *****************

consensus_5281#0      ACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGA 474
consensus_5281#1      ACGGCAGTACAATCGTCTCGTGAAGGCTATGCCACCGCGAGATTTGGTCAAGTATGAGGA 314
                      ************************************************************

consensus_5281#0      GCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCT 534
consensus_5281#1      GCAGAAGGAGAAGTACGGCGATGCGTTCTACGGTGGGCCGAACGTGATACTGCAGGGTCT 374
                      ************************************************************

consensus_5281#0      GCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGC 594
consensus_5281#1      GCACAAGGACACTCCGGCAGCGATCGACAACATGGTGAAGGATCTGGAGGGCCAGATTGC 434
                      ************************************************************

consensus_5281#0      TAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACAT 654
consensus_5281#1      TAAGCGCAAGAAGTTCTCTCGCAGACGTACACACAACGACGATGCTGACATTGATTACAT 494
                      ************************************************************

consensus_5281#0      TAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGC 714
consensus_5281#1      TAACGAGAAGAATGCACGGTTCAACAAGAAGCTGGAGCGATTCTATGGCGAGCACACGGC 554
                      ************************************************************

consensus_5281#0      AGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGCGTAAAAAGAACGTCT 774
consensus_5281#1      AGAAATCAAACAGAATCTGGAGCGCGGTACAGCTATCTAATGTGTGTAAAAAGAACGTCT 614
                      ******************************************** ***************

consensus_5281#0      TATTTTAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAAGCGACAATTTAA 834
consensus_5281#1      TATTTCAATGCTTTATAATAAATGGTTTAGTTGTAACATATACAATAA---AAAAANTAA 671
                      ***** ******************************************   * **  ***

consensus_5281#0      GTTGTAAGCAGTTTTGCT 852
consensus_5281#1      AAAAAANGCAGCATG--- 686
                           * ****  *    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)