These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 982 fasta sequence [CCGGGATGCTGCTAAAGGAAGGTGTGCGGCTGGGAGGCGCTCTAGGAAGCGAACGAACCAGCAGAGCTGTGTTAGAGCAGTGGCACTGCATTTATGTTTAGTAAAGAACCGGCCTGTAGAGGCAACTAAGGAAGCTTCTAACCGCTCGTCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGG--AAAAGGGAAAGACGACCGTAGCTTCCCCGGTACAAAACTTGCCAACGGTGTAGGGAGGGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCACACAGACACACTCACACTGCTTTCGTGTGCAGAAGATGCACAGTTTCATCATCTTCTGTTAGTGATTGTAACA---TCTATATGTTTAATTTCGTACCTTTTGTTGGTGATCGATCGTGCGCCCTCTTTACCGCCCCGG--GGAATAGCCAGCTTCCCTTTTCCTGCTGTAGATGTATGTAAACGAAGGGCTATGCTTTTGATCTGTTTTTTTTTTTGCGTAAAAACACACGGCCTACTACTAATAACTACTGTGCCCGCAATAGT-AACAGTAGGATTTGCTTAGTTTGTGAGCTCCTTCCTGTACGCTTTTGAGCATCCGTTCCGGGCAAGGATCTTCCGCTTCTCTCCTACTTCAAAGTCATATAAACCATCATATTGCGTGCGAACGACAGGTCCGCATTGTGACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAGTAAGCAGGTANGCTTAAGATTANGGTAGAAAGCTANGGAAATAAGTTTTAACGTAAACATTGNTAACTATC-AAAAAAGCGGGANGAGAAAA-GTAGCGAAACGCAAGGCAAAAGTAAACTGCACGGTTGAGTTAAAACACGAAAGAGTCAATAAACATTTTAAGGACC] [+] EMBL BM589693 [CCGGGATGCTGCTAAAGGAAGGTGTGCGGCTGGGAGGCGCTCTAGGAAGCGAACGAACCAGCAGAGCTGTGTTAGAGCAGTGGCACTGCATTTATGTTTAGTAAAGAACCGGCCTGTAGAGGCAACTAAGGAAGCTTCTAACCGCTCGTCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGG AAAAGGGAAAGACGACCGTAGCTTCCCCGGTACAAAACTTGCCAACGGTGTAGGGAGGGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCACACAGACACACTCACACTGCTTTCGTGTGCAGAAGATGCACAGTTTCATCATCTTCTGTTAGTGATTGTAACA TCTATATGTTTAATTTCGTACCTTTTGTTGGTGATCGATCGTGCGCCCTCTTTACCGCCCCGG GGAATAGCCAGCTTCCCTTTTCCTGCTGTAGATGTATGTAAACGAAGGGCTATGCTTTTGATCTGTTTTTTTTTTTGCGTAAAAACACACGGCCTACTACTAATAACTACTGTGCCCGCAATAGTAAACAGTAGGATTTGCTTAGTTTGTGAGCTCCTTCCTGTACGCTTTTGAG ] [+] EMBL BX623628 [ TTTAGTAAGGAACCGGGCTGTAGAGGCAACTAGGGAAGCTTCTAACCACTCGCCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGCAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGGGAAAAAGGGAAGGTCGACCGCAGCTTCTCCGGTACAAAACTTGCCAACGGTGTAGGGAGAGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTCGAAATCCGTTGCTCCGTTTCCTGCCCACAC ACACACTCACACCGCTTTCTGGTGCAGAAGATGCACAGACTCATCATCTTCTGTTAGTGATTGTAACATTTTTTTTAGGTTTAATTTCGTAACTTTTGTTGGTGATCGATCGTGCGCCCTCTTTACCGCCCCGGGTGGAATGGCCAGCTTTCCTTTTCCTGCTGTAGCTGTATGTAAACGAAGGGCTATGCTTTTGATCTG TTTTTTGCGTAACAACACACGGCCTACTACTAATAACTACTGTGCCCGCAATAGT AACAGTAGGATTTGCTTAGTTTGTGAGATCCTTCCTGTACGCTTTTGAGCATCCGTTCCGGGCAAGGATCTTCCGCTTCTCTCCTACTTCAAAGTCATATAAACCATCATATTGCGTGCGAACGACAGGTCCGCATTGTGACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAGTAAGCAGGTANGCTTAAGATTANGGTAGAAAGCTANGGAAATAAGTTTTAACGTAAACATTGNTAACTATC AAAAAAGCGGGANGAGAAAA GTAGCGAAA ] [+] EMBL BM626112 [ ccgCGCAATAGT AACAGTAGGA TTGCTTCGTTTGTGAGCTCCTTCCTGTACGCTTTTGAGCATCCGTTCCGGGCAAGGATTTTCCGCTGCTCTCCTACTTCAAAGTCATATAAACCATC ATTGCGTGCGGACGACAGGTCCGCATTGTAACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAGTAAGCAGGTAGGCTTAAGATTAGGGTAGAAAGCTA GGGAATAAGTTTTAACGTAAACATTGTTAACTATCAAAAAAAGCGGAAGGAGAAAAGGTAGCGAAACGCAAGGCAAAAGTAAACTGCACGGTTGAGTTAAAACACGAAAGAGTCAATAAACATTTTAAGGACC] consensusID : consensus_5285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CAGAATTCCGAGGTTACTAGGAAGCTTCTAACGCTCGTCGCGCGTTGCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGGAAAAGGGAAAGACGACGTAGCTTCCCCGGTACAAAATTGCAACGGTGTAGGAGGGGAGCGCCATGTTTACACGTTGTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCAACAGAAACTCACACTGGCTTTCGGTGTGCAGAAGATGCCACAGTTTCATCATTCTTCTGTTAGTGATTGTAACATCTATATTGTTTTAATTTCGTACCTTTATGTCGGTGATCGGATCGGTGCGCCCTCTTTACGCCCCGGGGGAATAGGCCAGATTTCCCCTTTTCCTGCTGTCGATGTATGTAAACGAAGGGCTATGCCTNTTGATCTCANACATATATGGTACAAAACACACGGCGCTTACTAANTAATAAATAGCTGTGCCCGCCTAGTAACCACGGNAAGATTGNTCTATCTTGTCGAGCTCCCTTCCTGTTACGCATTTGAGCATCCCTCCNGGCCAAGATTTCCCGCTGCTCNNCTAACTTTCAAGTCACTNATCAACCATCCAATTGCGTNCTCGNAGACNGTCCCCACTATGTACACAGGCNC] [+] EMBL AL929810 [CAGAATTCCGAGGTTACTAGGAAGCTTCTAACGCTCGTCGCGCGTTGCAGCCAGAAGAGCTAGGTTTCTTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGAGTATCGTAGGGAAAAGGGAAAGACGACGTAGCTTCCCCGGTACAAAATTGCAACGGTGTAGGAGGGGAGCGCCATGTTTACACGTTGTGTATGTTGAAATCCGTTGCTCCGTTTCCTGCCCAACAGAAACTCACACTGGCTTTCGGTGTGCAGAAGATGCCACAGTTTCATCATTCTTCTGTTAGTGATTGTAACATCTATATTGTTTTAATTTCGTACCTTTATGTCGGTGATCGGATCGGTGCGCCCTCTTTACGCCCCGGGGGAATAGGCCAGATTTCCCCTTTTCCTGCTGTCGATGTATGTAAACGAAGGGCTATGCCTNTTGATCTCANACATATATGGTACAAAACACACGGCGCTTACTAANTAATAAATAGCTGTGCCCGCCTAGTAACCACGGNAAGATTGNTCTATCTTGTCGAGCTCCCTTCCTGTTACGCATTTGAGCATCCCTCCNGGCCAAGATTTCCCGCTGCTCNNCTAACTTTCAAGTCACTNATCAACCATCCAATTGCGTNCTCGNAGACNGTCCCCACTATGTACACAGGCNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5285#0 CCGGGATGCTGCTAAAGGAAGGTGTGCGGCTGGGAGGCGCTCTAGGAAGCGAACGAACCA 60 consensus_5285#1 ------------------------------------------------------------ consensus_5285#0 GCAGAGCTGTGTTAGAGCAGTGGCACTGCATTTATGTTTAGTAAAGAACCGGCCTGTAGA 120 consensus_5285#1 -------------------------------------------------CAGAATTCCGA 11 * * * ** consensus_5285#0 GGCAACTAAGGAAGCTTCTAACCGCTCGTCGCGCGTTGCCAGCCAGAAGAGCTAGGTTTC 180 consensus_5285#1 GGTTACTA-GGAAGCTTCTAAC-GCTCGTCGCGCGTTGC-AGCCAGAAGAGCTAGGTTTC 68 ** **** ************* **************** ******************** consensus_5285#0 TTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGA 240 consensus_5285#1 TTCATTGTACAAACTCACTTGTAATCCAGCGAAGCGGGTGAATTCAAGCAATGATTGTGA 128 ************************************************************ consensus_5285#0 GTATCGTAGGGAAAAGGGAAAGACGACCGTAGCTTCCCCGGTACAAAACTTGCCAACGGT 300 consensus_5285#1 GTATCGTAGGGAAAAGGGAAAGACGAC-GTAGCTTCCCCGGTACAAAATT--GCAACGGT 185 *************************** ******************** * ******* consensus_5285#0 GTAGGGAGGGGAGCGCCAATGTTTACACGTTTGTTTTTGTATGTTGAAATCCGTTGCTCC 360 consensus_5285#1 GTAGG-AGGGGAGCGCCA-TGTTTACACGTTG-----TGTATGTTGAAATCCGTTGCTCC 238 ***** ************ ************ *********************** consensus_5285#0 GTTTCCTGCCCACACAGACACACTCACACTGCTTTCGTGTGCAGAAGATGC-ACAGTTTC 419 consensus_5285#1 GTTTCCTGCCCA-ACAGAAACTCACACTGGCTTTCGGTGTGCAGAAGATGCCACAGTTTC 297 ************ ***** ** * *** ** *************** ******** consensus_5285#0 ATCAT-CTTCTGTTAGTGATTGTAACATCTATATG--TTTAATTTCGTACCTTT-TGTTG 475 consensus_5285#1 ATCATTCTTCTGTTAGTGATTGTAACATCTATATTGTTTTAATTTCGTACCTTTATGTCG 357 ***** **************************** ***************** *** * consensus_5285#0 GTGATCG-ATCG-TGCGCCCTCTTTACCGCCCCGGGGAATAG-CCAGCTT--CCCTTTTC 530 consensus_5285#1 GTGATCGGATCGGTGCGCCCTCTTTACGCCCCGGGGGAATAGGCCAGATTTCCCCTTTTC 417 ******* **** ************** *** ********* **** ** ******** consensus_5285#0 CTGCTGTAGATGTATGTAAACGAAGGGCTATGC-TTTTGATCTGTTTTTTTTTTTGCGTA 589 consensus_5285#1 CTGCTGTCGATGTATGTAAACGAAGGGCTATGCCTNTTGATCTCANACATATATGGTACA 477 ******* ************************* * ******* * * * * * consensus_5285#0 AAA-ACACACGGCCTACTA-CTAATAACTA-CTGTGCCCGC--AATAGTAACAGTAGGAT 644 consensus_5285#1 AAACACACGGCGCTTACTAANTAATAAATAGCTGTGCCCGCCTAGTAACCACGGNAAGAT 537 *** **** ** ***** ****** ** ********** * ** ** * * *** consensus_5285#0 TTGCTTAGTTTGT-GAGCTCC-TTCCTGT-ACGCTTTTGAGCATCCGTTCCGGGCAAGGA 701 consensus_5285#1 TGNTCTATCTTGTCGAGCTCCCTTCCTGTTACGCATTTGAGCATCC-CTCCNGGCCAAGA 596 * ** **** ******* ******* **** *********** *** *** * ** consensus_5285#0 TCTTCCGCTTCTCTCCTA-CTTCAAAGTCA--TATAAACCATCATATTGCGTGCGAACGA 758 consensus_5285#1 TTTCCCGCTGCTCNNCTAACTTTCAAGTCACTNATCAACCATCCAATTGCGTNCTCGNAG 656 * * ***** *** *** *** ****** ** ******* ******* * consensus_5285#0 CAGGTCCGCATTGTG---ACAGGCTGCAGGGTCGTGTGAGCCCTTCTCGTGTGTAGCAAG 815 consensus_5285#1 ACNGTCCCCACTATGTACACAGGCNC---------------------------------- 682 **** ** * ** ****** consensus_5285#0 TAAGCAGGTANGCTTAAGATTANGGTAGAAAGCTANGGAAATAAGTTTTAACGTAAACAT 875 consensus_5285#1 ------------------------------------------------------------ consensus_5285#0 TGNTAACTATCAAAAAAGCGGGANGAGAAAAGTAGCGAAACGCAAGGCAAAAGTAAACTG 935 consensus_5285#1 ------------------------------------------------------------ consensus_5285#0 CACGGTTGAGTTAAAACACGAAAGAGTCAATAAACATTTTAAGGACC 982 consensus_5285#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||