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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence
[GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGTCGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATGCATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAAATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTGCCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCCGGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGTGATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACAACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCTGT]
[+] EMBL BX610467 [GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGTCGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTC ]
[+] EMBL BX609287 [ AGCAAAATTGAGCGGACGAAAGGGAGTGCAGCAGTTGGGGAAAGCTTGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTTTAAATGCATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAAATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTGCCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTG ]
[+] EMBL BX622231 [ gaCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCCGGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGTGATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACAACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCTGT]
consensusID : consensus_5287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTC]
[+] EMBL BM649948 [CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5287#0 GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGT 60
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 CGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATG 120
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 CATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAA 180
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 ATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTG 240
consensus_5287#1 ----------------------------------------------------------CC 2
consensus_5287#0 CCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGC 300
consensus_5287#1 GCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGC 62
************************************************** ********
consensus_5287#0 AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT 360
consensus_5287#1 AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT 122
************************************************************
consensus_5287#0 TGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACAC 420
consensus_5287#1 TGTTTAAACCTCC-CATTTCTTTCTCTTCTCTCTCT-CTCTCTCTCTCTCTCACACACAC 180
********** * * ** ** * ********** ** ***** ****** * *****
consensus_5287#0 ACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGT 480
consensus_5287#1 ACACACACACACTC---------------------------------------------- 194
**************
consensus_5287#0 TGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTT 540
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 TGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGC 600
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 AGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAAC 660
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 TAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTC 720
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 TCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCT 780
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 GCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTG 840
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 CGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCC 900
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 GGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGT 960
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 GATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACA 1020
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 ACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCT 1080
consensus_5287#1 ------------------------------------------------------------
consensus_5287#0 GT 1082
consensus_5287#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||