These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1367 fasta sequence [CGACCCACGCGTCCGCAAAATACCATTTCTATTAGCATTATCCTAGCGGCTTCTATTTCCTTTGCCCATTACTCGTTCAATACATGTGTATTACGGTTCATTTAGCCAAAACAGGCAAAAAACAAACACACACTCTGTATAAACAATTAAACGAAAACAAGCAAAATAATTTTAAAATAACACACGCACACATACACAGTCTCGGTAGCGGTTGTTTATTTTACGTCTCCATAGTAAGTGCCTTATTCGTACGAAAAAAAAACAAAATTGTAAAAAATAAAAATAGCGCATAAGCATGAACCAACACTTGGGCAAAACACGAGAAAAAAGAGATGGAAAATGGAAAATGAAAAGAATTGATGAATGAAAAGGAATGAAACAAAAAAAGTCCAAACAAACTGAAATCAATTTTGAAAGCATTAAAAAAAAAGAAATTAAAACAAACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAATGTAAAACCTAATACTCTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGCATGATTACCGAAATGCTCGAAACCTTTTCTCTCCGTCTCTCTCTTTCTCCCTATTGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTATTCACTATTTTCTAACCACTCTCTCTCTCTCGCGCTCTATCCTTCTATGTAGCTTTTGAAAAATTACGTTAACCTTCTGTACATATATTGTAGCGTTAGGAGATTAAGTTAGTTACTATCATCGAAGGTATCTTGCTAATTAAAAGCTCGACAAAGTTAGCTCGCTAGGACAGAGATCCCGTTACATTCTGCAAATGTTGCTGGTTCATTTCATCACTCCCATAGACAGATACATACACTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAGCCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAATGGTTTTTTGTTTCGTTTGTTTTAAAGCGTTCGGGTAGCTTGCAGATTTTGGCAGATCTTTGCGTTACAGTACGAACCAATCACAACAGAACTAATATCCAGTACCAGAAGCGAAACGAACAAAGTAAGGACGAGGTGTAGTAGGGAAACTAATTGTGTACAGGTCTAAAAATAGAAACAAAAAAACGAAGGAAATAATAGGAGGGAGGCTGACACGGAGAAATCATCGGGAGTAATAAATGTATTTCCATAGAAGTGTTCCTTTTTTAAAAAAAAAAAAAAAAAAAACAGGCATGTGTNACCTCGGGGGA] [+] EMBL BM654506 [CGACCCACGCGTCCGCAAAATACCATTTCTATTAGCATTATCCTAGCGGCTTCTATTTCCTTTGCCCATTACTCGTTCAATACATGTGTATTACGGTTCATTTAGCCAAAACAGGCAAAAAACAAACACACACTCTGTATAAACAATTAAACGAAAACAAGCAAAATAATTTTAAAATAACACACGCACACATACACAGTCTCGGTAGCGGTTGTTTATTTTACGTCTCCATAGTAAGTGCCTTATTCGTACGAAAAAAAAACAAAATTGTAAAAAATAAAAATAGCGCATAAGCATGAACCAACACTTGGGCAAAACACGAGAAAAAAGAGATGGAAAATGGAAAATGAAAAGAATTGATGAATGAAAAGGAATGAAACAAAAAAAGTCCAAACAAACTGAAATCAATTTTGAAAGCATTAAAAAAAAAGAAATTAAAACAAACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAATGTAAAACCTAATACTCTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGCATGATTACCGAAATGCTCGAAACCTTTTCTCTCCGTCTCTCTCTTTCTCCCTATTGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTATTCACTATTTTCTAACCACTCTCTCT ] [+] EMBL BX628736 [ TGATCAAGAGAGGATGGACGAATGTAAAACCTAATACTCTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGCATGATTACCGAAATGCTCGAAACCTTTTCTCTCCGTCTCTCTCTTTCTCCCTATTGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTATTCACTATTTTCTAACCACTTTCTCTCTCTCGCGCTCTATCCTTCTATGTAGCTTTTGAAAAATTACGTTAACCTTCTGTACATATATTGTAGCGTTAGGAGATTAAGTTAGTTACTATCATCGAAGGTATCTTGCTAATTAAAAGCTCGACAAAGTTAGCTCGCTAGGACAGAGATCCCGTTACATTCTGCAAATGTTGCTGGTTCATTTCATCACTCCCATAGACAGATACATACACTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAGCCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAAT ] [-] EMBL AL933242 [ AGGACAGAGATCCCGTTACATTCTGCAAATGTTGCTGGTTCATTTCATCACTCCCATAGACAGATACATACACTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAGCCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAATGGTTTTTTGTTTCGTTTGTTTTAAAGCGTTCGGGTAGCTTGCAGATTTTGGCAGATCTTTGCGTTACAGTACGAACCAATCACAACAGAACTAATATCCAGTACCAGAAGCGAAACGAACAAAGTAAGGACGAGGTGTAGTAGGGAAACTAATTGTGTACAGGTCTAAAAATAGAAACAAAAAAACGAAGGAAATAATAGGAGGGAGGCTGACACGGAGAAATCATCGGGAGTAATAAATGTATTTCCATAGAAGTGTTCCTTTTTTAAAAAAAAAAAAAAAAAAAACAGGCATGTGTNACCTCGGGGGA] consensusID : consensus_5288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1237 fasta sequence [ATTAAACCCAAAAGAATGTTAAAATACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAAAGTAAAACCTAATACTCTCCCTCAAAACAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGTATGATTAACTGAAATTGCTACGAAAACCTATATTACTACTACCCCTACTACTACATACTACTAATATAGCATNTGAATAAACAAACTAAACGGATTATATCTAAATACCAACTTATATTAACAGGAAGACCATATTNAGTATACAGTAACCTTGGTATATAATATACACACTATATANATATACTAACAACCCAACATACTACTACTACTACAGACTGACNTCCTAATACAGCNTATCCCTNAATNGTCACGGCCTATTTCTCGAAAAAAAAAAGTACAACCGGTTTACAGCCTTATACCTTGGTAAACAAGTCAGTAATATATGGTCACGGCCGCTATCANGTGGGGAAATTNTAAAAGGTATACGACATCNTCANCCTTAATTCCCACTACCGCAACAGCGTACAATNCGTATTGGCTCAACATNTNAACANAANCGCCTCCTGGAACCAAAGAACGGTNTCCACGGCCTTCCGGACTACAAGGAGGAACCACAGGAAGGAAATTACCCCCCGATTATACCTTAAATANGCACTTTAGGACACAAAACTATTCCCTNAGGGCNTNGGGATTCATACCACTGNCTACTCCCAACTACCAATGCTCTCCTCCCCCCAGTTAACGCCACATCCAGCGACTTAACCACACTTNAACAANCANTTGGGTGACACAAAGCGGGAGCACACGGGCCACCGCACANAATTGGCGGAACGNCGGGTACACGACGCAATTTAAACACTATAAATACGCGCGCCACACACATAAACTCAACTCACCCNAGCTNNTGGGTNNCAGCAACTTACGCGACCNGAACACAGACGGCCGGTTGACAGGGGGNAAAACAGCCNGGGGGGTAAAACGCCTTAGGNNAACGNGGAGACTTCCCCTCGACCGNCTCAAAGCGAANGCNTCAGGCNGAAANACACNGGGNNTANANCACAAACGAGGCACAGAGTAGNNCCGAGATGCCANACCAGACNAGACAGACTCACCGGGNAGNCAAACACCTCCTGGCCGACACGCCTTNNACCCAGGGGCGACACNCAACTNCTCTCACAAGGCACTCGCAG] [+] EMBL AL929850 [ATTAAACCCAAAAGAATGTTAAAATACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAAAGTAAAACCTAATACTCTCCCTCAAAACAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGTATGATTAACTGAAATTGCTACGAAAACCTATATTACTACTACCCCTACTACTACATACTACTAATATAGCATNTGAATAAACAAACTAAACGGATTATATCTAAATACCAACTTATATTAACAGGAAGACCATATTNAGTATACAGTAACCTTGGTATATAATATACACACTATATANATATACTAACAACCCAACATACTACTACTACTACAGACTGACNTCCTAATACAGCNTATCCCTNAATNGTCACGGCCTATTTCTCGAAAAAAAAAAGTACAACCGGTTTACAGCCTTATACCTTGGTAAACAAGTCAGTAATATATGGTCACGGCCGCTATCANGTGGGGAAATTNTAAAAGGTATACGACATCNTCANCCTTAATTCCCACTACCGCAACAGCGTACAATNCGTATTGGCTCAACATNTNAACANAANCGCCTCCTGGAACCAAAGAACGGTNTCCACGGCCTTCCGGACTACAAGGAGGAACCACAGGAAGGAAATTACCCCCCGATTATACCTTAAATANGCACTTTAGGACACAAAACTATTCCCTNAGGGCNTNGGGATTCATACCACTGNCTACTCCCAACTACCAATGCTCTCCTCCCCCCAGTTAACGCCACATCCAGCGACTTAACCACACTTNAACAANCANTTGGGTGACACAAAGCGGGAGCACACGGGCCACCGCACANAATTGGCGGAACGNCGGGTACACGACGCAATTTAAACACTATAAATACGCGCGCCACACACATAAACTCAACTCACCCNAGCTNNTGGGTNNCAGCAACTTACGCGACCNGAACACAGACGGCCGGTTGACAGGGGGNAAAACAGCCNGGGGGGTAAAACGCCTTAGGNNAACGNGGAGACTTCCCCTCGACCGNCTCAAAGCGAANGCNTCAGGCNGAAANACACNGGGNNTANANCACAAACGAGGCACAGAGTAGNNCCGAGATGCCANACCAGACNAGACAGACTCACCGGGNAGNCAAACACCTCCTGGCCGACACGCCTTNNACCCAGGGGCGACACNCAACTNCTCTCACAAGGCACTCGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5288#0 ---CGACCCACGCGTCCGC-AAAATACCATTTCTATTAGCATTATCCTAGCGGCTTCTAT 56 consensus_5288#1 ATTAAACCCAAAAGAATGTTAAAATACAAAAAACACACGAAGCGTATAAAAAAACTACAA 60 ***** * * ******* * * * * * * * * consensus_5288#0 TTCCTT----TGCCCATTACTCGTTCAATACATGTGTATTACGGTTCATTTAGCCAAAAC 112 consensus_5288#1 CATGGAAGAGTGATCAAGAGAGGATGGACGAAAGTAAAACCTAATACTCTCCCTCAAAAC 120 ** ** * * * * * ** * * * * ****** consensus_5288#0 AGGCAAAAAACA---AACACACACTCTGTATAAACAATTAAACGAAA-ACAAGCAAAATA 168 consensus_5288#1 AAATTCAAACTGTTTAACACAAACA-TACACTTACAATATGATGCAGTATGATTAACTGA 179 * *** ****** ** * * ***** * * * * * ** * consensus_5288#0 ATTTTAAAATAACACACGCACACATACACAGTCTCGGTAGCGGTTGTTTATTTTACGTCT 228 consensus_5288#1 AATTGCTACGAAAACCTATATTACTAC-TACCCCTACTACTACATACTACTAATATAGCA 238 * ** * ** ** * *** * * ** * * * ** * consensus_5288#0 CCATAGTAAGTGCCTTATTCGTACGAAAA--AAAAACAAAATTGTAAAAAATAAAAATAG 286 consensus_5288#1 TNTGAATAAACAAACTAAACGGATTATATCTAAATACCAACTTATATTAA-CAGGAAGAC 297 * *** ** ** * * * *** ** ** ** ** ** * ** * consensus_5288#0 CGCAT-AAGCATGAACCAACACTTGGGCAAAACACGAGAAAAAAGAGATGGAAAATGGAA 345 consensus_5288#1 CATATTNAGTATACAGTAACCTTGGTATATAATAT-ACACACTATATANATATACTAACA 356 * ** ** ** * *** * * * ** * * * * * * * * * * * consensus_5288#0 AATGAAAAGAATTGATGAATGAAAAGGAATGAAACAAAAAAAGTCCAAACAAACTGAAAT 405 consensus_5288#1 ACCCAACATACT--ACTACTACTACAGACTGACNTCCTAATA--CAGCNTATCCCTNAAT 412 * ** * * * * * * * ** *** ** * * * * *** consensus_5288#0 CAATTTTGAAAGCATTAAAAAAAAAGAAATTAAAACAAACAAAAAACACACGAAGCGTAT 465 consensus_5288#1 NGTCACGGCCTATTTCTCGAAAAAAAAAAGTACAACCGGTTTACAGCCTTATACCTTGGT 472 * * ****** *** ** *** * * * * * consensus_5288#0 AAAAAAACTA-CAACATGGAAGAGTGATCAAGAGAGGATGGACGAATGTAAAACCTAATA 524 consensus_5288#1 AAACAAGTCAGTAATATATGGTCACGGCCGCTATCANGTGGGGAAATTNTAAAAGGTATA 532 *** ** * ** ** * * * *** *** *** *** consensus_5288#0 CT-CTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCA 583 consensus_5288#1 CGACATCNTCANCCTTAATTCCCACTACC--GCAACAGCGTACAATNCGTAT-TGGCTCA 589 * * * *** ***** *** ** * * **** * ** ** ** consensus_5288#0 GCATGATTACCGAAATGCTC---GAAACCTTTTCTCTCCGTCT-CTCTCTTTCTCCCTAT 639 consensus_5288#1 ACATNTNAACANAANCGCCTCCTGGAACCAAAGAACGGTNTCCACGGCCTTCCGGACTAC 649 *** ** ** ** * **** * ** * *** * *** consensus_5288#0 TGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTAT 699 consensus_5288#1 AAGGAGGAACCACAGGAAGGAAATTACCCCCCGATTATACCTTAAATANGCACT-TTAGG 708 * ** ** * *** * * * *** ** * *** ** consensus_5288#0 TCACTATTTTCTAACCACTCTCTCTC--TCTCGCGCTCTATCCTTCTATGTAGCTTTTGA 757 consensus_5288#1 ACACAA------AACTATTCCCTNAGGGCNTNGGGATTCATACCACTGNCTA-CTCCCAA 761 *** * *** * ** ** * * * * ** * ** ** ** * consensus_5288#0 AAAATTACGTTAACCTTCTGTACATATATTGTAGCGTTAGGAGATTAAGTTAGTTACTAT 817 consensus_5288#1 CTACCAATGCTCTCCTCCCCC-CAGTTAACGCCACATCCAGCGACTTAACCA--CACTTN 818 * * * * *** * ** ** * * * * ** * * * *** consensus_5288#0 CATCGAAGGTATCTTGCTAATTAAAAGCTCGACAAAGTTAGCTCGCTAGGACAGAGATCC 877 consensus_5288#1 AAC---AANCANTTGGGTGACACAAAGCGGGAGCACACGGGCCACC--GCACANAATTGG 873 * * * * * * * ***** ** * ** * * *** * * consensus_5288#0 CGTTACATTCTGCAAATGTTGCTGGTTCATTTC-ATCACTCCCATAGACAGATACATACA 936 consensus_5288#1 CGGAACGNCGGGTACACGACGCAATTTAAACACTATAAATACGCGCGCCACACACATAAA 933 ** ** * * * * ** ** * * ** * * * * ** * ***** * consensus_5288#0 CTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAG 996 consensus_5288#1 CT-CAACTCACCCNAGCTNNTGGGTNNCA----GCAACTTACGCGACC---NGAACACAG 985 ** *** * * * ** ** *** * * * *** ** consensus_5288#0 CCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAA 1056 consensus_5288#1 ACGGCCGGTTGACAGGGGGNAAAACAGCCNG-GGGGGTAAAACGCCTTAG--GNNAACGN 1042 ** * * * **** * ** * **** * consensus_5288#0 TGGTTTTTTGTTTCGTTTGTTTTAAAGCGTTCGGGTAGCTTGCAGATTTTGGCAGATCTT 1116 consensus_5288#1 GGAGACTTCCCCTCGACCGNCTCAAAGCGAANGCNT------CAGGCN--GAAANACACN 1094 * ** *** * * ****** * * *** * * * consensus_5288#0 TGCGTTACAGTACGAACCAATCACAA--CAGAACTAATATCCAGTACCAGAAGCGAAACG 1174 consensus_5288#1 GGGNNTANANCACAAACGAGGCACAGAGTAGNNCCGAGATGCCANACCAGACNAGACAGA 1154 * ** * ** *** * **** ** * * ** * ****** ** * consensus_5288#0 AACAAAGTAAGGACGAGGTGTAGTAGGGAAACTAATTGTGTACAGGTCTAAAAATAGAAA 1234 consensus_5288#1 CTCACCGGGNAGNCAAACACCTCCTGGCCGACACGCCTTNNAC---CCAGGGGCGACACN 1211 ** * * * * ** ** * ** * * * consensus_5288#0 CAAAAAAACGAAGGAAATAATAGGAGGGAGGCTGACACGGAGAAATCATCGGGAGTAATA 1294 consensus_5288#1 CAACTNCTCTCACAAGGCACTCGCAG---------------------------------- 1237 *** * * * * * * ** consensus_5288#0 AATGTATTTCCATAGAAGTGTTCCTTTTTTAAAAAAAAAAAAAAAAAAAACAGGCATGTG 1354 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 TNACCTCGGGGGA 1367 consensus_5288#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||