cluster # 5289

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Anopheles gambiae
cluster # 5289 cluster # 5289 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5289#0 length = 1191 sequences # 3

consensus_5289#1 length = 507 sequences # 1

consensusID : consensus_5289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1191
fasta sequence

                              [GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAATCGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGGCTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACGATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGCGCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAGTGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGTATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACAGCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCAACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATACGGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTACCGTCGATGA-TGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATC-AATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGA-CGCCGCAACGGC-GGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGCGCCACCTGGAGCCTTCCGTNTACTTCTGG-ATAATGAAGAAACGGGCGGAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTA-TTCCTTTCATTTCAATCG-ACAACG-GG-TG-TG-TGACCA-TGGCAGGGCGCATTA-TA-TGCTCT---TNCCCA-T-TGTNAGTT-TAC-AATTATTGG-T-AG-CTA-TTTAA-AACTATACGCTTNCCACCCCGAA]

[+] EMBL CNS08CF1             [GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAATCGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGGCTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACGATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGCGCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAGTGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGTATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACAGCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCAACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATACGGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTACCGTCGATGA TGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACA CTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATC AATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGA CGCCGCAACGGCGGGGCGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCA CCTACTGGTTGCGCCACCTGGCGCCTTCCG                                                                                                                                                                                                                                           ]
[+] EMBL AL929898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cgaggttAAAGCTTGCCTACCGTCGATGACTGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATCAAATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGATCGCCGCAACGGC GGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGCGCCACCTGGAGCCTTCCGTNTACTTCTGGNATAATGAAGAAACGGGCGGAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTA TTCCTTTCATTTCAATCGCACAACGCGGCTGCTGCTGACCACTGGCAGGGCGCATTACTACTGCTCTCNCTNCCCACTCTGTNAGTTCTACAAATTATTGGNTAAGNCTACTTTAACAACTATACGCTTNC         ]
[+] EMBL BX626118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATC AATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGA CGCCGCAACGGC GGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGCGCCACCTGGAGCCTTCCGTTTACTTCTGG ATAATGAAGAAACGGGCGGAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTAGTTCCTTTCATTTCAATCG ACAACG GG TG TG TGACCA TGGCAGGGCGCATTA TA TGTTTT   TTTTTA T TGTTAGTT TAC AATTATTGG T AG CTA TTTAA AACTATACGTTTACCACCCCGAA]




>consensus_5289#0
GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAAT
CGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGG
CTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACG
ATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGC
GCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAG
TGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGT
ATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACA
GCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCA
ACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATAC
GGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTACCGTCGA
TGATGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCA
TCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCT
TGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATCA
ATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGACG
CCGCAACGGCGGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCG
CGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGC
GCCACCTGGAGCCTTCCGTNTACTTCTGGATAATGAAGAAACGGGCGGAAAAACTAAACT
CCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTATTCCTTTCA
TTTCAATCGACAACGGGTGTGTGACCATGGCAGGGCGCATTATATGCTCTTNCCCATTGT
NAGTTTACAATTATTGGTAGCTATTTAAAACTATACGCTTNCCACCCCGAA

consensusID : consensus_5289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [CCCGAGGTTNAAGCTGCTACGTCGATGATTGCACGCATGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGTGCAAGTTTGGCATCCCGCACGTTCCGCGTACAGTGCATNGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGACGCTGGATATCTGCCCGGTTACATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCGTTGAACCTGGATGCATCNGCTATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNGTGGGGTGTGCTGCGAATCTGACTCCCAGTGAACACAAGCGTCCAAGCATAACTTGATAGGCTGATCCGCGCTGGTGACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGTCCTGGCGCTGCAGCCTACCTTGTGGTTTTGGCCGGGCCAACCCTTGTGGCAAGGCCCTATCCCGGTTTTACCTTCCTTGTGGAGTTA]

[+] EMBL AL931904             [CCCGAGGTTNAAGCTGCTACGTCGATGATTGCACGCATGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGTGCAAGTTTGGCATCCCGCACGTTCCGCGTACAGTGCATNGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGACGCTGGATATCTGCCCGGTTACATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCGTTGAACCTGGATGCATCNGCTATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNGTGGGGTGTGCTGCGAATCTGACTCCCAGTGAACACAAGCGTCCAAGCATAACTTGATAGGCTGATCCGCGCTGGTGACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGTCCTGGCGCTGCAGCCTACCTTGTGGTTTTGGCCGGGCCAACCCTTGTGGCAAGGCCCTATCCCGGTTTTACCTTCCTTGTGGAGTTA]




>consensus_5289#1
CCCGAGGTTNAAGCTGCTACGTCGATGATTGCACGCATGAGGGGCGCATCGTGAGCATTT
CCAGCGTGCAGTGCAAGTTTGGCATCCCGCACGTTCCGCGTACAGTGCATNGAAGCATGC
GATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGA
CGCTGGATATCTGCCCGGTTACATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCG
TTGAACCTGGATGCATCNGCTATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNG
TGGGGTGTGCTGCGAATCTGACTCCCAGTGAACACAAGCGTCCAAGCATAACTTGATAGG
CTGATCCGCGCTGGTGACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGT
CCTGGCGCTGCAGCCTACCTTGTGGTTTTGGCCGGGCCAACCCTTGTGGCAAGGCCCTAT
CCCGGTTTTACCTTCCTTGTGGAGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5289#0      GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAAT 60
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      CGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGG 120
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      CTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACG 180
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      ATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGC 240
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      GCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAG 300
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      TGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGT 360
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      ATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACA 420
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      GCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCA 480
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      ACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATAC 540
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      GGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTAC--CGTC 598
consensus_5289#1      -------------------------------------CCCGAGGTTNAAGCTGCTACGTC 23
                                                           * ***        ** *  ****

consensus_5289#0      GATGATGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGC 658
consensus_5289#1      GATGATTGCACGCATG-AGGGGCGCATCGTGAGCATTTCCAGCGTGCAGTGCAAGTTTGG 82
                      ****** ******* * ******************************** ********* 

consensus_5289#0      CATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAG 718
consensus_5289#1      CATCCCGCAC-GTTCCGCGTACAGTGCATNGAAGCATGCGATGCAAGCGTTCTGCGACAG 141
                      ********** ****************** ******************************

consensus_5289#0      CTTGCGGGCCGAGGTGGCGAAG-GATAACATCAAGGTGACGCTG-ATATC-GCCCGGTTA 775
consensus_5289#1      CTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGACGCTGGATATCTGCCCGGTTA 201
                      ********************** ********************* ***** *********

consensus_5289#0      CATCAATA-CGGC-GCTGTCACTGAACG--CGCTTACCG--GGACC--GGTGCATCGTAT 827
consensus_5289#1      CATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCGTTGAACCTGGATGCATCNGCT 261
                      ******** **** *************    ***** **  * ***  * ******   *

consensus_5289#0      GGCAAAATGGACGCCGCAACGGCGGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATA 887
consensus_5289#1      ATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNGTGGGGTGTGCTGCGAATCTGA 321
                               **    *  ** **  *       *  *    **       *   * *  *

consensus_5289#0      CTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCA 947
consensus_5289#1      CTCCCAGTGAACACAAGCGTCCAA--GCATAACTTGATAG-GCTGAT--CCGCGCTGGTG 376
                      **    * ** * *  * * * **  * **    ** * * ** ***  *  ***  *  

consensus_5289#0      GCCTACTGGTTGCGCCACCTGGAGCCTTCCGTNTACTTCTGGATAATGAAGAAACGGGCG 1007
consensus_5289#1      ACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGTCCTGGCGCTGCAGCC- 435
                       *  *        *     **     * * *    *   **  *  **  *   * * * 

consensus_5289#0      GAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTT 1067
consensus_5289#1      -TACCTTGTGGTTTTGGCCGGGCCAACCCTT----GTGGCAAGGC--CCTATCCCGGTTT 488
                        *         *         * *** *        * ***  *  ****  *    **

consensus_5289#0      TCTATTCCTTTCATTTCAATCGACAACGGGTGTGTGACCATGGCAGGGCGCATTATATGC 1127
consensus_5289#1      TACCTTCCTTGTGGAGTTA----------------------------------------- 507
                      *   ******        *                                         

consensus_5289#0      TCTTNCCCATTGTNAGTTTACAATTATTGGTAGCTATTTAAAACTATACGCTTNCCACCC 1187
consensus_5289#1      ------------------------------------------------------------
                                                                                  

consensus_5289#0      CGAA 1191
consensus_5289#1      ----