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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence
[CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGTTCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATTTTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT-GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT-GGCATGG-ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCTCTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAACGAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATGGATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT]
[+] EMBL BM600627 [CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGTTCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATTTTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGGCATGGAACCAGTGGCCG ]
[+] EMBL BM603271 [ ccgTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT GGCATGG ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCTCTAGCGATTGTGACGCAATGG ]
[+] EMBL BX621030 [ TGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT GGCATGG ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTAT GGGTTGTGTTAGT AAACCATCTTTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAACGAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATGGATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT]
consensusID : consensus_5290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCCACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA]
[+] EMBL AL929942 [CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCCACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5290#0 CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGT 60
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATT 120
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAA 180
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAA 240
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 GCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGG 300
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAA 360
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 CCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATT 420
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 CTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCA 480
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 AGAGCATTCGCATTCCACACAAGCATCACCTACAA-ATACATTAAACCATAGCAAAAGAC 539
consensus_5290#1 -----------------------------CGACGTTATACATTAAACCATAGCAAAAGAC 31
* ** ************************
consensus_5290#0 CGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGC 599
consensus_5290#1 -GCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGC 90
************ **********************************************
consensus_5290#0 AATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTT 659
consensus_5290#1 AATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTT 150
************************************************************
consensus_5290#0 CTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGC-ATGGACCAGTGGCCGTAAAAACA 718
consensus_5290#1 CTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACA 210
************************************ ************ **********
consensus_5290#0 TTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATG 778
consensus_5290#1 TTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATG 270
************* *** * *** ** ******* * *****************
consensus_5290#0 TTAAA--GAAAACACGTC-ATT---GCAACATTCTACTATT-TA-TGGGGTTGT-GT-TA 828
consensus_5290#1 TTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATA 330
** ** ********** *** ** ************ ** ********* ** **
consensus_5290#0 GTAAAACCATC--TCTAGC-GATTGTG---ACGCAAT--GGTG--TGAAG-GTAGCAGTT 877
consensus_5290#1 GGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGC 390
* ******* **** ** * ** ****** **** ***** *** **
consensus_5290#0 T---GTATAAACATATTCACGTT--AACG----AGACCAAGTTC-----------AAGCT 917
consensus_5290#1 TTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCT 450
* ********* ** ** * ** * **** * * * ***
consensus_5290#0 AAACACNCTGATTGATATC-GCTCGGCAAGCAGC---TCAAGGAATGGATTATTTGCATG 973
consensus_5290#1 AACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGG 510
** ** * *** ** * ** * ***** * * * *
consensus_5290#0 CAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT-------------- 1019
consensus_5290#1 CCACTGCCATCTCATATCGGCGACTTGGCCACAACA-CANTAACTTATTTCAATCACGGT 569
* * ** **** *** ** * ** * ***
consensus_5290#0 ------------------------------------------------------------
consensus_5290#1 GATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTA 629
consensus_5290#0 -----------------
consensus_5290#1 NACCANGGGCGGCAACA 646
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||