These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence [CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGTTCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATTTTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT-GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT-GGCATGG-ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCTCTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAACGAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATGGATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT] [+] EMBL BM600627 [CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGTTCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATTTTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGGCATGGAACCAGTGGCCG ] [+] EMBL BM603271 [ ccgTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT GGCATGG ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCTCTAGCGATTGTGACGCAATGG ] [+] EMBL BX621030 [ TGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT GGCATGG ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTAT GGGTTGTGTTAGT AAACCATCTTTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAACGAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATGGATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT] consensusID : consensus_5290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCCACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA] [+] EMBL AL929942 [CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCCACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5290#0 CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGT 60 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATT 120 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAA 180 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAA 240 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 GCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGG 300 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAA 360 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 CCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATT 420 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 CTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCA 480 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 AGAGCATTCGCATTCCACACAAGCATCACCTACAA-ATACATTAAACCATAGCAAAAGAC 539 consensus_5290#1 -----------------------------CGACGTTATACATTAAACCATAGCAAAAGAC 31 * ** ************************ consensus_5290#0 CGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGC 599 consensus_5290#1 -GCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGC 90 ************ ********************************************** consensus_5290#0 AATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTT 659 consensus_5290#1 AATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTT 150 ************************************************************ consensus_5290#0 CTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGC-ATGGACCAGTGGCCGTAAAAACA 718 consensus_5290#1 CTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACA 210 ************************************ ************ ********** consensus_5290#0 TTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATG 778 consensus_5290#1 TTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATG 270 ************* *** * *** ** ******* * ***************** consensus_5290#0 TTAAA--GAAAACACGTC-ATT---GCAACATTCTACTATT-TA-TGGGGTTGT-GT-TA 828 consensus_5290#1 TTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATA 330 ** ** ********** *** ** ************ ** ********* ** ** consensus_5290#0 GTAAAACCATC--TCTAGC-GATTGTG---ACGCAAT--GGTG--TGAAG-GTAGCAGTT 877 consensus_5290#1 GGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGC 390 * ******* **** ** * ** ****** **** ***** *** ** consensus_5290#0 T---GTATAAACATATTCACGTT--AACG----AGACCAAGTTC-----------AAGCT 917 consensus_5290#1 TTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCT 450 * ********* ** ** * ** * **** * * * *** consensus_5290#0 AAACACNCTGATTGATATC-GCTCGGCAAGCAGC---TCAAGGAATGGATTATTTGCATG 973 consensus_5290#1 AACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGG 510 ** ** * *** ** * ** * ***** * * * * consensus_5290#0 CAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT-------------- 1019 consensus_5290#1 CCACTGCCATCTCATATCGGCGACTTGGCCACAACA-CANTAACTTATTTCAATCACGGT 569 * * ** **** *** ** * ** * *** consensus_5290#0 ------------------------------------------------------------ consensus_5290#1 GATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTA 629 consensus_5290#0 ----------------- consensus_5290#1 NACCANGGGCGGCAACA 646 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||