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Anopheles gambiae
cluster # 5290 cluster # 5290       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5290#0 length = 1019 sequences # 3  
consensus_5290#1 length = 646 sequences # 1  

consensusID : consensus_5290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1019
fasta sequence
                              [CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGTTCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATTTTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT-GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT-GGCATGG-ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCTCTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAACGAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATGGATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT]

[+] EMBL BM600627             [CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGTTCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATTTTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGGCATGGAACCAGTGGCCG                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM603271             [                                                                                                                                                                  ccgTGGATTTTACTGTAATCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAAGCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGGTATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAACCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATTCTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCAAGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACCGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT GGCATGG ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCTCTAGCGATTGTGACGCAATGG                                                                                                                                                              ]
[+] EMBL BX621030             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATT GGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATT GGCATGG ACCAGTGGCCGTAAAAACATTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTTAAAGAAAACACGTCATTGCAACATTCTACTATTTAT GGGTTGTGTTAGT AAACCATCTTTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAACGAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATGGATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT]


>consensus_5290#0 CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGT TCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATT TTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAA TCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAA GCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGG TATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAA CCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATT CTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCA AGAGCATTCGCATTCCACACAAGCATCACCTACAAATACATTAAACCATAGCAAAAGACC GCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCA ATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTC TGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCATGGACCAGTGGCCGTAAAAACATT GAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATGTT AAAGAAAACACGTCATTGCAACATTCTACTATTTATGGGGTTGTGTTAGTAAAACCATCT CTAGCGATTGTGACGCAATGGTGTGAAGGTAGCAGTTTGTATAAACATATTCACGTTAAC GAGACCAAGTTCAAGCTAAACACNCTGATTGATATCGCTCGGCAAGCAGCTCAAGGAATG GATTATTTGCATGCAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT



consensusID : consensus_5290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence
                              [CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCCACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA]

[+] EMBL AL929942             [CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCCACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA]


>consensus_5290#1 CGACGTTATACATTAAACCATAGCAAAAGACGCGGGCTCGATCNGCTGATGAAAGCAATA AGAATCTGCTATCTCCAAGGGATTCCAAGCAATCCGATGAAAACTGGAATATCCAGGCAG AGGAAATTTTAATAGGACAACGAATTGGTTCTGGATCGTTTGGTACAGTTTATAAAGCTC ATTGGCCATGGACCAGTGGGCGTAAAAACATTGAACGTAAAAAACCCCAAGTCGGGACCA GTACAAGCCATTCAGAATGAAGTAGCAATGTTCAACCGAAAACACGTNCATTTGCACACC ATTCTACTATTATACTGGGGTTGTCGTATAGGTAAACCATTCTNTTAGCCGACTTTGTGG ACGCAACTGGGTGGTTGAAGCGTAAGAGGCTTCGGTATAAACACGAATACTTTCCANCGG TTTAAACCAGGACCCACACGTTCACAGGCTAACAACCACGGCCTGGATCTGCATAATACG CGTCGGGCAAAGGACAGCGCTTCACACGGGCCACTGCCATCTCATATCGGCGACTTGGCC ACAACACANTAACTTATTTCAATCACGGTGATCCTATAACCGTCCTCAAAGTAACCCATT TGTCCTATNGCCGCTNGGANCTGACTCTANACCANGGGCGGCAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5290#0      CCGCCCACGCGTCCGGTGGGAAACTGATGTAAGCGCTCTAAACTGCGATGAAGTGTTCGT 60
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      TCGTATCCTGGACATTGGATTCCCAACGTATATATCGCATCAGTTTATCCGGAAAACATT 120
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      TTTTTCCCTTGCATTCTGTGAGTGCTGCCGCCGTTTGCTGTTTACTGGATTTTACTGTAA 180
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      TCAGTGTAACTATAGATTCCACCAGCGATGTGTCGATAAAGTACCACCTATATGCAGCAA 240
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      GCGACACATGGATAGCACATTTTATCATGTGCTTTTGGCCAACCCAGAAAGCACGGCTGG 300
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      TATCATTAATCCAGGGGCCGGTGGATACAGTACAAGCTTGCGTCATCCACGTTCTCTCAA 360
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      CCAGCATGATCGTTCCAATTCGGCTCCAAATGTTTGCATTAATAATGTGATAAAGCCATT 420
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      CTTCGGAGGAGAAAATAGACATGTGATCAGCAATCGACCATTACAGGCACAACCAAATCA 480
consensus_5290#1      ------------------------------------------------------------
                                                                                  

consensus_5290#0      AGAGCATTCGCATTCCACACAAGCATCACCTACAA-ATACATTAAACCATAGCAAAAGAC 539
consensus_5290#1      -----------------------------CGACGTTATACATTAAACCATAGCAAAAGAC 31
                                                   * **   ************************

consensus_5290#0      CGCGGGCTCGATCAGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGC 599
consensus_5290#1      -GCGGGCTCGATCNGCTGATGAAAGCAATAAGAATCTGCTATCTCCAAGGGATTCCAAGC 90
                       ************ **********************************************

consensus_5290#0      AATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTT 659
consensus_5290#1      AATCCGATGAAAACTGGAATATCCAGGCAGAGGAAATTTTAATAGGACAACGAATTGGTT 150
                      ************************************************************

consensus_5290#0      CTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGC-ATGGACCAGTGGCCGTAAAAACA 718
consensus_5290#1      CTGGATCGTTTGGTACAGTTTATAAAGCTCATTGGCCATGGACCAGTGGGCGTAAAAACA 210
                      ************************************ ************ **********

consensus_5290#0      TTGAACGTAAAAACCCCAAGTCCGGCACAGCTACAAGCATTCAAGAATGAAGTAGCAATG 778
consensus_5290#1      TTGAACGTAAAAAACCCCAAGTCGGGACCAGTACAAGCCATTCAGAATGAAGTAGCAATG 270
                      ************* *** *   *** **   *******  *  *****************

consensus_5290#0      TTAAA--GAAAACACGTC-ATT---GCAACATTCTACTATT-TA-TGGGGTTGT-GT-TA 828
consensus_5290#1      TTCAACCGAAAACACGTNCATTTGCACACCATTCTACTATTATACTGGGGTTGTCGTATA 330
                      ** **  **********  ***    ** ************ ** ********* ** **

consensus_5290#0      GTAAAACCATC--TCTAGC-GATTGTG---ACGCAAT--GGTG--TGAAG-GTAGCAGTT 877
consensus_5290#1      GGTAAACCATTCTNTTAGCCGACTTTGTGGACGCAACTGGGTGGTTGAAGCGTAAGAGGC 390
                      *  *******     **** ** * **   ******   ****  ***** ***  **  

consensus_5290#0      T---GTATAAACATATTCACGTT--AACG----AGACCAAGTTC-----------AAGCT 917
consensus_5290#1      TTCGGTATAAACACGAATACTTTCCANCGGTTTAAACCAGGACCCACACGTTCACAGGCT 450
                      *   *********     ** **  * **    * **** *  *           * ***

consensus_5290#0      AAACACNCTGATTGATATC-GCTCGGCAAGCAGC---TCAAGGAATGGATTATTTGCATG 973
consensus_5290#1      AACAACCACGGCCTGGATCTGCATAATACGCGTCGGGCAAAGGACAGCGCTTCACACGGG 510
                      **  **   *      *** **     * **  *     *****  *   *     *  *

consensus_5290#0      CAAAAAATATTATTCATCGTGATCTTAAGTCTAATAACATTTTCTT-------------- 1019
consensus_5290#1      CCACTGCCATCTCATATCGGCGACTTGGCCACAACA-CANTAACTTATTTCAATCACGGT 569
                      * *     **     ****    ***      ** * ** *  ***              

consensus_5290#0      ------------------------------------------------------------
consensus_5290#1      GATCCTATAACCGTCCTCAAAGTAACCCATTTGTCCTATNGCCGCTNGGANCTGACTCTA 629
                                                                                  

consensus_5290#0      -----------------
consensus_5290#1      NACCANGGGCGGCAACA 646
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)