cluster # 5291

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5291 cluster # 5291 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5291#0 length = 840 sequences # 3

consensus_5291#1 length = 556 sequences # 1

consensusID : consensus_5291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 840
fasta sequence

                              [GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGGGGACAGAAAAGGAATCCCTTTGCTCAAGGACAATTTTCGTGTTTTTTAATTGTTTCTTAGTTTGTATACACACTCAATACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCGGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAGATTGACCCGCG-GGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCG-AAGCTGCTCAAGTACCCCGGGGCGCGCG-ACATTTTCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCG-AGGAGCAAGCTCGACCAAACGAA-GTA-CTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCTCGAACAGTTGCGACGAGGAGCGCCCGAACGCGATCGANGAACTGCTTCGCCACGGCCGGCTTTAAGNCTTGGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAAGGGCCTGCGGTTGGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCNNAAGGGCGCAATGGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTGCCNGGAAGCACT]

[+] EMBL BX601935             [GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGGGGACAGAAAAGGAATCCCTTTGCTCAAGGACAATTTTCGTGTTTTTTAATTGTTTCTTAGTTTGTATACACACTCAATACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCGGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAGATTGACCCGCG GGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGCATGGGCTCG AAGCTGCTGAAGTACCCCGGGGCGCGCG ACATTTTCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCG AGGAGCAAGCTCGACCAAACGAA GTA CTGCCAGCCGGCCGTCATGGTA                                                                                                                                                                                                                                                                              ]
[+] EMBL BM600908             [                    ccgCAAAAGCCGGCCTGGGGACACAAAAGGAATCCCTTTGCTCAAGGAAAATTTTCGTGTTTTT  ACTGTTTCTTAATTCGTATACACACTCAATACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCGGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAGATTGACCCGCG GGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCG AAGCTGCTCAAGT                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX619547             [                                                                                                                                                                                                                                                                                                                                                                          aggCCCGCGNTNAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGTAAGCTGCTCAAGTACCCTGGGGCGCGCGAACATTTTCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGNAGCAAGCTCGACCAAACGAATGTANCTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCTCGAACAGTTGCGACGAGGAGCGCCCGAACGCGATCGANGAACTGCTTCGCCACGGCCGGCTTTAAGNCTTGGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAAGGGCCTGCGGTTGGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCNNAAGGGCGCAATGGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTGCCNGGAAGCACT]




>consensus_5291#0
GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGGGGACAGAAAAGGAATCCCTTTG
CTCAAGGACAATTTTCGTGTTTTTTAATTGTTTCTTAGTTTGTATACACACTCAATACTC
GCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGGGACG
GACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCG
GCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTG
CCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAG
ATTGACCCGCGGGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGT
ATGGGCTCGAAGCTGCTCAAGTACCCCGGGGCGCGCGACATTTTCGCCCTCGCCAACGAG
GTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAGGAGCAAGCTCGACCAA
ACGAAGTACTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCTCGAACAGTTG
CGACGAGGAGCGCCCGAACGCGATCGANGAACTGCTTCGCCACGGCCGGCTTTAAGNCTT
GGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAAGGGCCTGCGGTT
GGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCNNAAGGGCGCAAT
GGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTGCCNGGAAGCACT

consensusID : consensus_5291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTTGCTCAAGGAAAATTTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGTACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAAATGCTGGCCACCTTCGACGATATTAAACCGACCGAAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGCGCGACATTATATCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGAGCAAGCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAACGTCCCTAGCCGCGCTCGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGGGTTCGACCAAGGACGG]

[+] EMBL AL930006             [AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTTGCTCAAGGAAAATTTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGTACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAAATGCTGGCCACCTTCGACGATATTAAACCGACCGAAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGCGCGACATTATATCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGAGCAAGCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAACGTCCCTAGCCGCGCTCGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGGGTTCGACCAAGGACGG]




>consensus_5291#1
AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTTGCTCAAGGAAAAT
TTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGTACTCGCCATGCTG
TTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAA
CTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAAATGCTGGCCACCT
TCGACGATATTAAACCGACCGAAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCC
GGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGC
GCGACATTATATCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCAT
CGAGGGACCGAAGAGCAAGCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAAC
GTCCCTAGCCGCGCTCGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGG
GTTCGACCAAGGACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5291#0      GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGG-GGACAGAAAAGGAATCCCTTT 59
consensus_5291#1      -------------AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTT 47
                                   * *   *          ******** ***** ***************

consensus_5291#0      GCTCAAGGACAATTTTCGTGTTTTTTAAT-TGTTTCTTAGTTTGTATACA-CACTCAA-T 116
consensus_5291#1      GCTCAAGGAAAATTTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGT 107
                      ********* ************* *** * ** *  * **** ******* ******* *

consensus_5291#0      ACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGG 176
consensus_5291#1      ACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGG 167
                      ************************************ ***********************

consensus_5291#0      GACGGACGCGAAACTCCCGCCCGTAGTTGGC-ACGGAAAAGGTGAAGGAACTGTTGGAAA 235
consensus_5291#1      GACGGACGCGAAACTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAA 227
                      ******************************* ****************************

consensus_5291#0      ATGC-GGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCC 294
consensus_5291#1      ATGCTGGCCACCTTCGACGATATTAAACCGACCG-------------------------- 261
                      **** *****************************                          

consensus_5291#0      ACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGA 354
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      CCAAAGATTGACCCGCGGGAAACGAACGTCAT-CCTCTTCCCGGGCCAGGGCACCCAGTA 413
consensus_5291#1      ---AAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCCGGGCCAGGGCACCCAGTA 318
                         ***************************** ***************************

consensus_5291#0      CGTCGGTATGGGCTCGAAGCTGC-TCAAGTACCCCGGGGCGCGCGACATTTT--CGCCCT 470
consensus_5291#1      CGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGCGCGACATTATATCGCCCT 378
                      *********************** ********** *************** *  ******

consensus_5291#0      CGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAGGAGCAA 530
consensus_5291#1      CGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGAGCAA 438
                      ***************************************************** ******

consensus_5291#0      GCTCGACCAAACGAAGTACTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCT 590
consensus_5291#1      GCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAACGTCCC---TAGCCGCGCT 495
                      ****** ************** ************************      ********

consensus_5291#0      CGAACAGTTGCGACGAGGAGC-GCCCGAACGCGATCGANGAACTGCTTCG-CCACGGCCG 648
consensus_5291#1      CGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGGGTTCGACCAAGGACG 555
                      *******      ******** ****************  *   * **** *** ** **

consensus_5291#0      GCTTTAAGNCTTGGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAA 708
consensus_5291#1      G----------------------------------------------------------- 556
                      *                                                           

consensus_5291#0      GGGCCTGCGGTTGGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCN 768
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      NAAGGGCGCAATGGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTG 828
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      CCNGGAAGCACT 840
consensus_5291#1      ------------