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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 898 fasta sequence
[GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGTAATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTTCTTCCCTCCCTTGGGGCTGTCGCGCAATCGC-TTTCCTCTCACATAGTTC-TTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG-GATTGCTGCGCAGCCAGTTGAC-GATCCGCCGGCTGCTCTTCTCCCAGA-TGTACACGTACCCACAG-TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT]
[+] EMBL AL933052 [GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGTAATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTTCTTCCCTCCCTTGGGGCTGTCGCGCAATCGC TTTCCTCTCACATAGTTC TTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCTATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAGAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCGTCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCCGAGGTGGCCAGTATTGGGAAGGCCGGGTGCGGATCGAGACAGTTGACCACCTCGCCTGAGATTGCTGCGCAG CAGTTGACNGAT CGACGGCTGCTCTTCTCCCAGATTGTACACGTACCCACAGTTCG TGACA TCA ]
[-] EMBL BX620669 [ TCGCGCAACCGCTTTTCTTCTCACATAGTTCTTTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAATTGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG GATTGCTGCGCAGCCAGTTGAC GATCCGCCGGCTGCTCTTCTCCCAGA TGTACACGTACCCACAG TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTT ]
[-] EMBL BX627226 [ AGTCNTTCCCGCCCNTTCGCCATAATAACGACCACGCCTGGAGGNCCNTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG GATTGCTGCGCAGCCAGTTGAC GATCCGCCGGCTGCTCTTCTCCCAGA TGTACACGTACCCACAG TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT]
consensusID : consensus_5294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGCNACCTCGGGCAATTC]
[-] EMBL AL930033 [TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGCNACCTCGGGCAATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5294#0 GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGT 60
consensus_5294#1 ------------------------------------------------------------
consensus_5294#0 AATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTT 120
consensus_5294#1 ------------------------------------------------------------
consensus_5294#0 CTTCCCTCCCTTGGGGCTGTCGCGCAATCGCTTTCCTCTCACATAGTTCTTCCACGCCGA 180
consensus_5294#1 ------------------------------------------------------------
consensus_5294#0 ATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCT 240
consensus_5294#1 ------------------------------------------------------------
consensus_5294#0 TCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGC 300
consensus_5294#1 ------------------------------------------------------------
consensus_5294#0 CGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCA 360
consensus_5294#1 ------------------TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCA 42
*************************************** **
consensus_5294#0 AA-CGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTG 419
consensus_5294#1 AAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTG 102
** **************************** * ********************* **
consensus_5294#0 CTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACAC 479
consensus_5294#1 CTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACAC 162
************************************************************
consensus_5294#0 GGGCGCAGTCTGCTCATCGC-GCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCA 538
consensus_5294#1 GGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCA 222
******************** ***************************************
consensus_5294#0 CGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCAC-CTCG 597
consensus_5294#1 CGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCG 282
******************************************************* ****
consensus_5294#0 CCCGGATTGCTGCGCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACG 657
consensus_5294#1 CCCGGATTGCTGC-CAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACG 341
************* **********************************************
consensus_5294#0 TACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCC 717
consensus_5294#1 TACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCC 401
************************************************************
consensus_5294#0 TTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCC 777
consensus_5294#1 TTGATGGTTTGCACGTT-CAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCC 460
***************** ******************************************
consensus_5294#0 TCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCC 837
consensus_5294#1 TCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGA-TCTCC 519
****************************************************** *****
consensus_5294#0 GTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCC 897
consensus_5294#1 GTCCCGTCGTG--TGTACACTGCN-AC------CTCGGGCAATTC--------------- 555
*********** ********** ** ** * * *
consensus_5294#0 T 898
consensus_5294#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||