cluster # 5299

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Anopheles gambiae
cluster # 5299 cluster # 5299 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5299#0 length = 739 sequences # 3

consensus_5299#1 length = 518 sequences # 1

consensusID : consensus_5299#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 739
fasta sequence

                              [CCCCGAGGTTATTGGTAGTGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTACCGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTTACTTCATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGCGGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGGAATAGCAACGACCCGCTGTATAAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGAGGGCGGTCAGTTGCCCCTTAGAAGATGGTACCTTTACGATGATATGCTGTTCCTATTGGCTAGCGGCAAGGAAAGAACTCCGGAGAGAAAGGTAATCAAACAGAACAACTATTCCACCGAGGACATGGATCAATCGATGGACGCAGTTTCCCATCTCGCTGATACTAAAACGACAACAGGCAACTCGCTCGAAATGTCAGGGCAAAATCCTATCCAGCGGACCGTGCCCCCGCCTTGGGCAGCAGTTTCGCGTACACCGATCCGGAAACAGATTAAGTCACAGCACGTAAGCTCNGTAGTCGTTCGGCAGGAC]

[+] EMBL AL932132             [CCCCGAGGTTATTGGTAGTGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTACCGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTTACTTCATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGCGGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGGAATAGCAACGACCCGCTGTATAAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGAGGGCGGTCAGTTGCCCCTTAGAAGATGGTACCTTTACGATGATATGCTGTTCCTATTGGCTAGCGGCAAGGAAAGAACTCCGGAGAGAAAGGTAATCAAACAGAACAACTATTCCACCGAGGACATGGATCAATCGATGGACGCAGTTTCCCATCTCGCTGATACT                                                                                                                                                   ]
[+] EMBL BX626800             [                                                              AACCGTTTGCCTTTACCGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTTACTTCATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGCGGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGGAATAGCAACGACCCGCTGTATAAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGAGGGCGGTCAGTTGCCCCTTAGAAGATGGTACCTTTACGATGATATGCTGTTCCTATTGGCTAGCGGCAAGGAAAGAACTCCGGAGAGAAAGGTAATCAAACAGAACAACTATTCCACCGAGGACATGGATCAATCGATGGACGCAGTTTCCCATCTCGCTGATACTAAAACGACAACAGGCAACTCGCTCGAAATGTCAGGGCAAAATCCTATCCAGCGGACCGTGCCCCCGCCTTGGGCAGCAGTTTCGCGTACACCGATCCGGAAACAGATTAAGTCACAGCACGTAAGCTCNGTAGTCGTTCGGCAGGAC]
[+] EMBL BX622198             [                                                                                                                                                                                                                                                                                                                TCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAGGGGTCGAGCATCACAAAATTGCGAGGGCGGTCAGTTGCCCCTTAGAAGATGGTACCTTTACGATGATATGCTGTTCCTATTGGCTAGCGGCAAGGAAAGAACTCCGGAGAGAAAGGTGATCGGACGGAACAACTGTTCCACCGAGGACATGGA                                                                                                                                                                                        ]




>consensus_5299#0
CCCCGAGGTTATTGGTAGTGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAA
CAAACCGTTTGCCTTTACCGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGA
GTATTTGTCGTTTTACTTCATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAA
GACCGTAGATCTAGGAGCGGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACC
TTACCTGTGGAATAGCAACGACCCGCTGTATAAAAATAAAAAATCTCAAGCCGAAGCATG
GGAGTCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTC
CCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAA
TTGCGAGGGCGGTCAGTTGCCCCTTAGAAGATGGTACCTTTACGATGATATGCTGTTCCT
ATTGGCTAGCGGCAAGGAAAGAACTCCGGAGAGAAAGGTAATCAAACAGAACAACTATTC
CACCGAGGACATGGATCAATCGATGGACGCAGTTTCCCATCTCGCTGATACTAAAACGAC
AACAGGCAACTCGCTCGAAATGTCAGGGCAAAATCCTATCCAGCGGACCGTGCCCCCGCC
TTGGGCAGCAGTTTCGCGTACACCGATCCGGAAACAGATTAAGTCACAGCACGTAAGCTC
NGTAGTCGTTCGGCAGGAC

consensusID : consensus_5299#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [AGATCCCCGAGGTTTTTGGATTTTCTCCTGGATGGTAACGTGTTACGTCTCGATTGGTAGTGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTACCGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTACTTCATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGCGGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGTGAATAGCAACGACCGCTGTATTAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGGTAAGTTCTCTGGGTGCGAATGTGGCTAATGAACTGAGCTTAATTGAGCATA]

[+] EMBL AL930120             [AGATCCCCGAGGTTTTTGGATTTTCTCCTGGATGGTAACGTGTTACGTCTCGATTGGTAGTGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTACCGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTACTTCATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGCGGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGTGAATAGCAACGACCGCTGTATTAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGGAGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGGTAAGTTCTCTGGGTGCGAATGTGGCTAATGAACTGAGCTTAATTGAGCATA]




>consensus_5299#1
AGATCCCCGAGGTTTTTGGATTTTCTCCTGGATGGTAACGTGTTACGTCTCGATTGGTAG
TGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTAC
CGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTACTTC
ATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGCG
GAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGTGAATAGCAA
CGACCGCTGTATTAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGGAG
ATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCCGT
CACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGGTAAGTTCTCTGGG
TGCGAATGTGGCTAATGAACTGAGCTTAATTGAGCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5299#0      ------------------------------------------CCCCGAGGTTATTGGTAG 18
consensus_5299#1      AGATCCCCGAGGTTTTTGGATTTTCTCCTGGATGGTAACGTGTTACGTCTCGATTGGTAG 60
                                                                   **     ********

consensus_5299#0      TGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTAC 78
consensus_5299#1      TGGAGCATGGCAAGAGCGCGACGAATATGAAAATTGTCGCAACAAACCGTTTGCCTTTAC 120
                      ************************************************************

consensus_5299#0      CGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTTTACTT 138
consensus_5299#1      CGTGCTGGAATACTGGCTTCACAGGATACTCATTTTTAAAGAGTATTTGTCGTTT-ACTT 179
                      ******************************************************* ****

consensus_5299#0      CATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGC 198
consensus_5299#1      CATTCCGGTCAGCAACATGAATATAAAAAGAGAAAGAACGAAGACCGTAGATCTAGGAGC 239
                      ************************************************************

consensus_5299#0      GGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTG-GAATAGCA 257
consensus_5299#1      GGAACGTACCAGGACACTGATACAGTTCATACAGGCGATACCTTACCTGTGTGAATAGCA 299
                      *************************************************** ********

consensus_5299#0      ACGACCCGCTGTATAAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGG 317
consensus_5299#1      ACGACC-GCTGTATTAAAATAAAAAATCTCAAGCCGAAGCATGGGAGTCCATTTCCGAGG 358
                      ****** ******* *********************************************

consensus_5299#0      AGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCC 377
consensus_5299#1      AGATGGGTGTACCAGTGCCGGAACTGAGACATAAATGGGCTTCCCTGCAATCCTCGTTCC 418
                      ************************************************************

consensus_5299#0      GTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCGAGGGCGGTCAGT 437
consensus_5299#1      GTCACTTCCTCGTCCTGTATCAAAAGGGTCGAGCATCACAAAATTGCG-GTAAGTTCTCT 477
                      ************************************************ *   * **  *

consensus_5299#0      TGCCCCTTAGAAGATGGTACCTTTACGATGATATGCTGTTCCTATTGGCTAGCGGCAAGG 497
consensus_5299#1      GGGTGC---GAATGTGGCTAATGAACTGAGCTTAATTGAGCATA---------------- 518
                       *   *   ***  ***    *  **   * *    **  * **                

consensus_5299#0      AAAGAACTCCGGAGAGAAAGGTAATCAAACAGAACAACTATTCCACCGAGGACATGGATC 557
consensus_5299#1      ------------------------------------------------------------
                                                                                  

consensus_5299#0      AATCGATGGACGCAGTTTCCCATCTCGCTGATACTAAAACGACAACAGGCAACTCGCTCG 617
consensus_5299#1      ------------------------------------------------------------
                                                                                  

consensus_5299#0      AAATGTCAGGGCAAAATCCTATCCAGCGGACCGTGCCCCCGCCTTGGGCAGCAGTTTCGC 677
consensus_5299#1      ------------------------------------------------------------
                                                                                  

consensus_5299#0      GTACACCGATCCGGAAACAGATTAAGTCACAGCACGTAAGCTCNGTAGTCGTTCGGCAGG 737
consensus_5299#1      ------------------------------------------------------------
                                                                                  

consensus_5299#0      AC 739
consensus_5299#1      --