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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1075 fasta sequence
[TTTTGCTTCGTTTTTTTTCGGCAAATTTGGCGCTCTCTATTTCGTTTACACCGTTAGCACACTCTACACGGCCGGCGAGTGTTTTAAATTCTCAATCGGAACATAGGCGAAGAAGTACTGTTCATATCGTAATCGTTTTTTTGATTTTTAGTTTTCCTCATAGTGTGTGGTGATTTAAGAGTAAAGCTTTTGCTGAAAAGCATGTACGTTATGTGTTGTTACCTTTTAGACGTTTGCCGAGGCTACTACTACTACCCCCAACTCTCTCTCTCTCTCTCTAACGGAGGAGACGAAAGACGTTGGTGGCTATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTTTTGTTTGCTTCTATTTTTCCGTCCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGTACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGCCTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCGTTTGCCGGACTGGAGCCCCACAATTGCAGGCATCCGAAAGCCGCCCGAGAGCTACTGTCGTCCTAACACTGTACTGCACCGTTCACAGATTGGTTGCGCTTCCGACAACAAGAATCGCCGGCAACGCGGGCAAAGCGTTTTGTCGGACTTGGTGACGGTGACGGTGAACCGATGTCCTTCCTGCTTCGGCGCTCCTTTACGCAGCGCGACGGAACCAACCTGTAGCAGCTCGCATAGTTCCGTAGAGTGGTCGTGTGCGTTCGGGACGGGATGTAGCATCGATAACAGGGCCAGATCGTTATCGTTGCACTCAACGGCCACCTCCAGCAGCCAGGTGTTCACGTTCAGCTGTCCCTTCTGATAGATGGTGTTACGTAGCGCGAGAACACACTGAACAGCGTGTACCGATGCCGTCGCATCGTCTCCACTCCGGCAAACACTTTGCCGCATGTGTGGCTTCGATTTGTAGAAATAATCTTGCTCATAAAATGTCCAGCTCTCTTCGACCAGGAACGGTACGATCGGCCACAGCACTTGTGCCAGCGTGCG]
[+] EMBL CNS09OES [TTTTGCTTCGTTTTTTTTCGGCAAATTTGGCGCTCTCTATTTCGTTTACACCGTTAGCACACTCTACACGGCCGGCGAGTGTTTTAAATTCTCAATCGGAACATAGGCGAAGAAGTACTGTTCATATCGTAATCGTTTTTTTGATTTTTAGTTTTCCTCATAGTGTGTGGTGATTTAAGAGTAAAGCTTTTGCTGAAAAGCATGTACGTTATGTGTTGTTACCTTTTAGACGTTTGCCGAGGCTACTACTACTACCCCCAACTCTCTCTCTCTCTCTCTAACGGAGGAGACGAAAGACGTTGGTGGCTATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTTTTGTTTGCTTCTATTTTTCCGTCCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGTACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGCCTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCGTTTGCCGGACTGGAGCCCCACAATTGCAGGCATCCGAAAGCCGCCCGAGAGCTACTGTCGTCCTAACACTGTACTGCACCGTTCACAGATTGGTTGCGCTTCCGACAACAAGAATCGCCGGCAACGCGGGCAAAGCGTTTTGTCGGACTTGGTGACGGTGACGGTGAACCGATGTCCTTCCTGCTTCGGCGCTCCTTTACGCAGCGCGACGGAACCAACCTGTAGCAGCTCGCATAGTTCCGTAGAGTGGTCGTGTGCGTTCGGGACGGGATGTAGCATCGATAACAGGGCCAGATCGTTATCGTTGCACTCAACGGCCACCTCCAGCAGCCAGGTGTTCACGTTCAGCTGTCCCTTCTGATAGATGGTGTTACGTAGCGCGAGAACACACTGAACAGCGTGTACCGATGCCGTCGCATCGTCTCCACTCCGGCAAAC ]
[-] EMBL CNS09OER [ AGTTTTCCTCATAGTGTGTGGTGATTTAAGAGTTAAGCTTTTGCTGAAAAG ATGTACGTTATGTGTTGTTACCTTTTAGACGTTTGCCGAGGCTACTACTACTACCCCCAACTTTCTCTCTCTCTCTCTAACGGAGGAGACGAAAGACGTTGGTGGCTATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTTTTGTTTGCTTCTATTTTTCCGTCCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGTACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGCCTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCGTTTGCCGGACTGGAGCCCCACAATTGCAGGCATCCGAAAGCCGCCCGAGAGCTACTGTCGTCCTAACACTGTACTGCACCGTTCACAGATTGGTTGCGCTTCCGACAACAAGAATCGCCGGCAACGCGGGCAAAGCGTTTTGTCGGACTTGGTGACGGTGACGGTGAACCGATGTCCTTCCTGCTTCGGCGCTCCTTTACGCAGCGCGACGGAACCAACCTGTAGCAGCTCGCATAGTTCCGTAGAGTGGTCGTGTGCGTTCGGGACGGGATGTAGCATCGATAACAGGGCCAGATCGTTAGCGTTGCACTCAACGGCCACCTCCAGCAGCCAGGTGTTCACGTTCAGCTGTGCCTGCTGATAGATGGTGTGACGTAGCGCGAGAGCACACTGAACAGCGTGTACCGATGCCGTCGCATCGTCTCCACTCCGGCAAACACTTTGCCGCATGTGTGGCTTCGATTTGTAGAAATAATCTTGCTCATAAAATGTCCAGCTCTCTTCGACCAGGAACGGTACGATCGGCCACAGCACTTGTGCCAGCGTGCG]
[-] EMBL BX609733 [ CAACGCGGGCAAAGCGTTTTGTCGGTCTTGGTGCCGGTGCCGGTGAACCGATGTCCTTCCTGCTTCGGCGCTCCTTTACGCGGCG ]
consensusID : consensus_5303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 936 fasta sequence
[GCACAACCAATAAGCTGTGTCCCCGCGNTAAAAANCGCTTTNCCNGGCCCCAACTGTGGCCNTCCCGGGCCCCCTGGGAAAACANACCACCGGGTTGTGTANCCCGTGATCCTCGGGAGTGCCCCCCAACAGGGGGACCCAANTGCCGTNTGNGGCTTTTTAATCCGNCCCCTTTTACGGAAGTGTAACCACAACGCTTCNTGGACTTGGAATTCTGCTCAAGGTTCCNATTGGCNTTGCGTTTAGTNTTTTTTCGNCAAAATTTTGGCGCTCTCTATTGTTCGTTTGACACCGTTAGGCACACTTCTGTACACGGCCCGGCGAGTGTNCGAATTCTCAATCGGNACATAGGCGAAGAAGTACTGTTCATATCGTGAATCGTTTTCTCTTGATTCTTTAGTTTTCCTCATAGTGTGTGGTGATTTAAGAGTTAAGCTTTTGCTGAAAAGATGTACGTTATGTGTTGTTACCTTTTATGTGTTTGCCGAGGCTACTACTACTACCCCCAACTCTCTCTCTCTCTCTAACGGAGGAGACGAAAGACGTTGGTGGCGATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTTTTGTTTGCTTCTATTTTTCCGTTCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGTACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGCCTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCTAAGAGGAGAGAGAGAAAGAGAGGGAGGTAGAAGAGAATTGAGAGAATATAATGTTTAATAGTGAAACAAATACACAATAAACAAGTTGTTAAACCGATCAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAACAGGCATGTTGCGGCCATCGTGCCGATTCTTGC]
[-] EMBL BX467761 [GCACAACCAATAAGCTGTGTCCCCGCGNTAAAAANCGCTTTNCCNGGCCCCAACTGTGGCCNTCCCGGGCCCCCTGGGAAAACANACCACCGGGTTGTGTANCCCGTGATCCTCGGGAGTGCCCCCCAACAGGGGGACCCAANTGCCGTNTGNGGCTTTTTAATCCGNCCCCTTTTACGGAAGTGTAACCACAACGCTTCNTGGACTTGGAATTCTGCTCAAGGTTCCNATTGGCNTTGCGTTTAGTNTTTTTTCGNCAAAATTTTGGCGCTCTCTATTGTTCGTTTGACACCGTTAGGCACACTTCTGTACACGGCCCGGCGAGTGTNCGAATTCTCAATCGGNACATAGGCGAAGAAGTACTGTTCATATCGTGAATCGTTTTCTCTTGATTCTTTAGTTTTCCTCATAGTGTGTGGTGATTTAAGAGTTAAGCTTTTGCTGAAAAGATGTACGTTATGTGTTGTTACCTTTTATGTGTTTGCCGAGGCTACTACTACTACCCCCAACTCTCTCTCTCTCTCTAACGGAGGAGACGAAAGACGTTGGTGGCGATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTTTTGTTTGCTTCTATTTTTCCGTTCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGTACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGCCTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCTAAGAGGAGAGAGAGAAAGAGAGGGAGGTAGAAGAGAATTGAGAGAATATAATGTTTAATAGTGAAACAAATACACAATAAACAAGTTGTTAAACCGATCAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAACAGGCATGTTGCGGCCATCGTGCCGATTCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5303#0 ------------------------------------------------------------
consensus_5303#1 GCACAACCAATAAGCTGTGTCCCCGCGNTAAAAANCGCTTTNCCNGGCCCCAACTGTGGC 60
consensus_5303#0 ------------------------------------------------------------
consensus_5303#1 CNTCCCGGGCCCCCTGGGAAAACANACCACCGGGTTGTGTANCCCGTGATCCTCGGGAGT 120
consensus_5303#0 ------------------------------------------------------------
consensus_5303#1 GCCCCCCAACAGGGGGACCCAANTGCCGTNTGNGGCTTTTTAATCCGNCCCCTTTTACGG 180
consensus_5303#0 --------------------------------------------------------TTTT 4
consensus_5303#1 AAGTGTAACCACAACGCTTCNTGGACTTGGAATTCTGCTCAAGGTTCCNATTGGCNTTGC 240
**
consensus_5303#0 GCTTCGTTTTTTTTCGGCAAA--TTTGGCGCTCTCTATT--TCGTTT-ACACCGTTAG-C 58
consensus_5303#1 GTTTAGTNTTTTTTCGNCAAAATTTTGGCGCTCTCTATTGTTCGTTTGACACCGTTAGGC 300
* ** ** ******** **** **************** ****** ********** *
consensus_5303#0 ACACTC---TACACGGCC-GGCGAGTGTTTTAAATTCTCAATCGGAACATAGGCGAAGAA 114
consensus_5303#1 ACACTTCTGTACACGGCCCGGCGAGTGTNC-GAATTCTCAATCGGNACATAGGCGAAGAA 359
***** ********* ********* ************* **************
consensus_5303#0 GTACTGTTCATATCGT-AATCGTTTTTT--TGATT-TTTAGTTTTCCTCATAGTGTGTGG 170
consensus_5303#1 GTACTGTTCATATCGTGAATCGTTTTCTCTTGATTCTTTAGTTTTCCTCATAGTGTGTGG 419
**************** ********* * ***** ************************
consensus_5303#0 TGATTTAAGAGTAAAGCTTTTGCTGAAAAGCATGTACGTTATGTGTTGTTACCTTTTAGA 230
consensus_5303#1 TGATTTAAGAGTTAAGCTTTTGCTGAAAAG-ATGTACGTTATGTGTTGTTACCTTTTATG 478
************ ***************** ***************************
consensus_5303#0 CGTTTGCCGAGGCTACTACTACTACCCCCAACTCTCTCTCTCTCTCTCTAACGGAGGAGA 290
consensus_5303#1 TGTTTGCCGAGGCTACTACTACTACCCCCAACTCTCTCTCTCTCTC--TAACGGAGGAGA 536
********************************************* ************
consensus_5303#0 CGAAAGACGTTGGTGGCTATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTT 350
consensus_5303#1 CGAAAGACGTTGGTGGCGATTTAATTTCTTATGCAACTGTTTGCGATTTGGTTTTAATTT 596
***************** ******************************************
consensus_5303#0 TTGTTTGCTTCTATTTTTCCGTCCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGT 410
consensus_5303#1 TTGTTTGCTTCTATTTTTCCGTTCTTCTTTTCCCTACAACTTCATTTTTCATCGTTCTGT 656
********************** *************************************
consensus_5303#0 ACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGC 470
consensus_5303#1 ACATACTTACATTACTGAGCAAAGCATTGCACCGTACACAACACAGCCACTTCGGTTTGC 716
************************************************************
consensus_5303#0 CTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCGTTTG 530
consensus_5303#1 CTTCCACCCATTTATCAGCAACAATCATTTACAACAACTTAAAACCATTCCCGCCT---- 772
*******************************************************
consensus_5303#0 CCGGACTGGAGCCCCACAATTGCAGGCATCCGAAAGCCGCCCGAGAGCTACTGTCGTCCT 590
consensus_5303#1 ---AAGAGGAGAGAGAGAAAGAGAGGGAGGTAGAAGAGAATTGAGAGAATATAATGTT-T 828
* **** * ** *** * *** ***** * ** *
consensus_5303#0 AACACTGTACTGCACCGTTCACAGATTGGTTGCGCTTCCGACAACAAGAATCGCCGGCAA 650
consensus_5303#1 AATAGTGAAACAAATACACAATAAACAAGTTGTTAAACCGATCAAAAAAAA----AAAAA 884
** * ** * * * * * **** **** * ** ** **
consensus_5303#0 CGCGGGCAAAGCGTTTTGTCGGACTTGGTGACGGTGACGGTGAACCGATGTCCTTCCTGC 710
consensus_5303#1 AAAAAAAAAAAGNAAAAAACAGGCATGTTG-CGGCCATCGTG--CCGAT-TCTTGC---- 936
*** * * * ** ** *** * *** ***** ** * *
consensus_5303#0 TTCGGCGCTCCTTTACGCAGCGCGACGGAACCAACCTGTAGCAGCTCGCATAGTTCCGTA 770
consensus_5303#1 ------------------------------------------------------------
consensus_5303#0 GAGTGGTCGTGTGCGTTCGGGACGGGATGTAGCATCGATAACAGGGCCAGATCGTTATCG 830
consensus_5303#1 ------------------------------------------------------------
consensus_5303#0 TTGCACTCAACGGCCACCTCCAGCAGCCAGGTGTTCACGTTCAGCTGTCCCTTCTGATAG 890
consensus_5303#1 ------------------------------------------------------------
consensus_5303#0 ATGGTGTTACGTAGCGCGAGAACACACTGAACAGCGTGTACCGATGCCGTCGCATCGTCT 950
consensus_5303#1 ------------------------------------------------------------
consensus_5303#0 CCACTCCGGCAAACACTTTGCCGCATGTGTGGCTTCGATTTGTAGAAATAATCTTGCTCA 1010
consensus_5303#1 ------------------------------------------------------------
consensus_5303#0 TAAAATGTCCAGCTCTCTTCGACCAGGAACGGTACGATCGGCCACAGCACTTGTGCCAGC 1070
consensus_5303#1 ------------------------------------------------------------
consensus_5303#0 GTGCG 1075
consensus_5303#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||