cluster # 5305

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Anopheles gambiae
cluster # 5305 cluster # 5305 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5305#0 length = 725 sequences # 3

consensus_5305#1 length = 605 sequences # 1

consensusID : consensus_5305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 725
fasta sequence

                              [GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCG-ACCGGGCAGGTAT--GGTGTGT-TAGGTTTACC-AT-GTCCACCATCG-AGGAGCGTACAGC-GTACCTA-GACAATCC-GTACTTCAAA-GGGCACATCTACGGGAACTTTAACCC-GTTCTAC-GTGACCA-TCGCC-GTCT-GTACC-GT-GCTC-GGCGTGTT-CAT-CTTC-GTGCTGAACA-TCGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACCGCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGGCCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTACCCGGCAGTGG]

[+] EMBL BX466349             [GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCGAACCGGGCAGGTATGAGGTGTGTATAGGTTTACCAATGGTCCACCATCGAAGGAGCGTACAGCGGTACCTAGGACAATCCGGTACTTCAAAGGGGCACATCTACGGGAACTTTAACCCGGTTCTACGGTGACCAGTCGCCGGTCTGGTACCGGTGGCTCGGGCGTGTTACATACTTCGGTGCTGAACACTCGTGTGCGGCTGCTGGTCGAAGg                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM636132             [                         ccgGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCG ACCGGGCAGGTAT  GGTGTGT TAGGTTTACC AT GTCCACCATCG AGGAGCGTACAGC GTACCTA GACAATCC GTACTTCAAA GGGCACATCTACGGGAACTTTAACCC GTTCTAC GTGACCA TCGCC GTCT GTACC GT GCTC GGCGTGTT CAT CTTC GTGCTGAACA TCGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACCGCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGGCCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGA                              ]
[+] EMBL BM652253             [                                            ccgGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCG ACCGGGCAGGTAT  GGTGTGT TAGGTTTACC AT GTCCACCATCG AGGAGCGTACAGC GTACCTA GACAATCC GTACTTCAAA GGGCACATCTACGGGAACTTTAACCC GTTCTAC GTGACCA TCGCC GTCT GTACC GT GCTC GGCGTGTT CAT CTTC GTGCTGAACA TCGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACCGCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGGCCAAAGAAAACCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTACCCGGCAGTGG]




>consensus_5305#0
GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGT
GACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGC
CCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCGACCGGGCAGGTATGGTG
TGTTAGGTTTACCATGTCCACCATCGAGGAGCGTACAGCGTACCTAGACAATCCGTACTT
CAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACCGT
GCTCGGCGTGTTCATCTTCGTGCTGAACATCGTGTGCGGCTGCTGCTCGAAGCACAAGCA
GTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACC
GCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGT
CAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCA
GTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCA
TCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGG
CCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTACCCGGC
AGTGG

consensusID : consensus_5305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [AAGAATNGCCCGAGGTTTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCTCCCCCCCCCAACCCCAATCGGATCCTGTGGACGGTTTTGCTGACCGGGCAGGTATGGTGTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGTACCTAGACAATCCGTACTTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACCTGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTATCGTTTGGTCGGCCACACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANGTGACA]

[+] EMBL AL930148             [AAGAATNGCCCGAGGTTTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCTCCCCCCCCCAACCCCAATCGGATCCTGTGGACGGTTTTGCTGACCGGGCAGGTATGGTGTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGTACCTAGACAATCCGTACTTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACCTGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTATCGTTTGGTCGGCCACACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANGTGACA]




>consensus_5305#1
AAGAATNGCCCGAGGTTTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGA
TAAAAACGTGTGCTCAGCTCCCCCCCCCAACCCCAATCGGATCCTGTGGACGGTTTTGCT
GACCGGGCAGGTATGGTGTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGT
ACCTAGACAATCCGTACTTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGA
CCATCGCCGTCTGTACCTGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGG
CTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGT
ATCGTTTGGTCGGCCACACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGA
CGCTAGCCACTTCCAGCCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCA
GCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCA
TCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANG
TGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5305#0      GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGT 60
consensus_5305#1      ------------------------------------------AAGAATNGCCCGAGGTTT 18
                                                                  *    * *       *

consensus_5305#0      GACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGC 120
consensus_5305#1      GACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGC 78
                      ************************************************************

consensus_5305#0      CCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGC-GACCGGGCAGGTATGGT 179
consensus_5305#1      TCCCCCCCCCAA-CCCCAATCGGATCCTGTGGACGGTTTTGCTGACCGGGCAGGTATGGT 137
                       ********* * ***************************** *****************

consensus_5305#0      GTGTTAGGTTTACCATGTCCACCATCGAGGAGC-GTACAGCGTACCTAGACAATCCGTAC 238
consensus_5305#1      GTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGTACCTAGACAATCCGTAC 197
                      ********************************* **************************

consensus_5305#0      TTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACC 298
consensus_5305#1      TTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACC 257
                      ************************************************************

consensus_5305#0      -GTGCTCGGCGTGTTCATCTTCGTGCTGAACATC-GTGTGCGGCTGCTGCTCGAAGCACA 356
consensus_5305#1      TGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGGCTGCTGCTCGAAGCACA 317
                       ********************************* *************************

consensus_5305#0      AGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCA 416
consensus_5305#1      AGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTATCGTTT-GGTCGGCCA 376
                      ******************************************* ****** *********

consensus_5305#0      CACCGCACAAGCAGCC-GCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAG 475
consensus_5305#1      CACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGACGCTAGCCACTTCCAG 436
                      **************** ********* *********************************

consensus_5305#0      CCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAG 535
consensus_5305#1      CCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAG 496
                      ***************** ******************************************

consensus_5305#0      TACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAG 595
consensus_5305#1      TACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAG 556
                      ************************************************************

consensus_5305#0      CAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGC 655
consensus_5305#1      CAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANGTGACA----------- 605
                      ****************************************** ******           

consensus_5305#0      GGCGGCCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTAC 715
consensus_5305#1      ------------------------------------------------------------
                                                                                  

consensus_5305#0      CCGGCAGTGG 725
consensus_5305#1      ----------