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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTG----AAG--AAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGG-------AAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT]
[+] EMBL BX468619 [AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTG AAG AAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGG AAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT]
[+] EMBL BM589175 [ ccgGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATACAAAGTGTGACCAGTATTTCGGTTGGTGGTGGACAAAGTGTGTGGACAAAGCATAGTGTCAGTGGAGGAAAGGAAAAATCGCTTTAGCAAATCTTCACCCTCTTTCTGGAAAAAAAAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGCGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAG CCGGAAGGGATTGCGGTGCGCGGTAACGC TACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGtt ]
consensusID : consensus_5308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATTTGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCGGTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT]
[+] EMBL BX627793 [GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATTTGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCGGTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT]
consensusID : consensus_5308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence
[GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACGACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC]
[+] EMBL AL930239 [GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACGACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5308#0 ------------------------------------------------------------
consensus_5308#1 GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGG 60
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 ------------------------------------------------------------
consensus_5308#1 ATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATT 120
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 --------------------AGATCGGCCGAGGC--TGNNGAACGTAACGGACGCGAACG 38
consensus_5308#1 TGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACG 180
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 CNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT 98
consensus_5308#1 CTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT 240
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT 158
consensus_5308#1 TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT 300
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG 218
consensus_5308#1 AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG 360
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG 278
consensus_5308#1 GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG 420
consensus_5308#2 ----------------------------------GCCGAGCGTCGACGGTGTCGATTCGG 26
*** ** *** * * * * *
consensus_5308#0 TTCAGGCCGATCAGCATCGTGCC---GGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAAC 335
consensus_5308#1 TTCAGGCCGATCAGCATCGTGCC---GGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAAC 477
consensus_5308#2 TGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATT 86
* * * ** ** ** * * ****** * * **
consensus_5308#0 CAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAAT 395
consensus_5308#1 CAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAG-CCGGAAGGAAT 536
consensus_5308#2 TGATTATTTATC----CCACACA-CAGCAC-AACACAGCGCACAGCGGGATG-ATGTAAT 139
* *** * * ** * **** * * ** **** * * * * ***
consensus_5308#0 TGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGG 455
consensus_5308#1 TGCGGTGCGCGGTAACGC-TACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT-- 593
consensus_5308#2 T--CGTTCGAAATAAACATCTCTTGGCGTACGGTCGC--GCGACGACATATTGGGG-TAA 194
* ** ** *** * * ****** * * * * *** *** * *
consensus_5308#0 GCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACT 515
consensus_5308#1 ------------------------------------------------------------
consensus_5308#2 GC-ATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC--- 250
consensus_5308#0 CGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCA 575
consensus_5308#1 ------------------------------------------------------------
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 TCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGA 635
consensus_5308#1 ------------------------------------------------------------
consensus_5308#2 ------------------------------------------------------------
consensus_5308#0 CAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT 679
consensus_5308#1 --------------------------------------------
consensus_5308#2 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||