cluster # 5311

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Anopheles gambiae
cluster # 5311 cluster # 5311 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5311#0 length = 1068 sequences # 3

consensus_5311#1 length = 646 sequences # 1

consensusID : consensus_5311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1068
fasta sequence

                              [AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGATGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGATGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTTGTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGATGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGAAAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAATCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGGCAAGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTCTAGGCTACGTTCCTAATACGGACGGCAGTTTAAAATCAGCCAAGGAAGCGGTAGTCGGATTGACCGAGACTGATGTGCAAAACATTCGCCAATTGTACAAAAAACGACGACAACGCGAAAGTAAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG]

[+] EMBL BX625834             [AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGATGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGATGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTTGTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGATGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGAAAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAATCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATG                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM632847             [                                                                                                                                                                                                         ccgGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGATGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGAAAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAATCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGGCAAGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGA                                                                                                                                                                                           ]
[+] EMBL BX628714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                TGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGG AAGGACTTCTTTTTCTT CCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTCTAGGCTACGTTCCTAATACGGACGGCAGTTTAAAATCAGCCAAGGAAGCGGTAGTCGGATTGACCGAGACTGATGTGCAAAACATTCGCCAATTGTACAAAAAACGACGACAACGCGAAAGTAAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG]




>consensus_5311#0
AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGA
TGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGA
TGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTT
GTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGA
TGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGA
AAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAA
TCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGA
ATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGA
ACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTT
CTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGC
GAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAA
AAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAA
ACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACT
GAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGGCA
AGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTCTA
GGCTACGTTCCTAATACGGACGGCAGTTTAAAATCAGCCAAGGAAGCGGTAGTCGGATTG
ACCGAGACTGATGTGCAAAACATTCGCCAATTGTACAAAAAACGACGACAACGCGAAAGT
AAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG

consensusID : consensus_5311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [CAAGAATCGCCCCGAGGTGTTGAAAGCAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTTACACACACGNTTCTCCTTGCACTGCCAANACATGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGGTCCCTGCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGCTNTTCCACTTGTTCTTGGAACTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTGAAAACGGTTGTACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTTCCCTGGCGTACTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGACTGACAAGCGCAGGAAAGGTCCTGGCAAATAAAAAAACAACCAAGGACAATGCAAAACAACANCACGGAAAAACGTTACAGAATCGGCCCCTGNAGACTTGGTGGTTTCGAACACAACACATGTGGACACGTGGGACAACATGGTGCACAAGANATGACAGAGAATACCTTCGGACACG]

[+] EMBL AL930396             [CAAGAATCGCCCCGAGGTGTTGAAAGCAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTTACACACACGNTTCTCCTTGCACTGCCAANACATGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGGTCCCTGCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGCTNTTCCACTTGTTCTTGGAACTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTGAAAACGGTTGTACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTTCCCTGGCGTACTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGACTGACAAGCGCAGGAAAGGTCCTGGCAAATAAAAAAACAACCAAGGACAATGCAAAACAACANCACGGAAAAACGTTACAGAATCGGCCCCTGNAGACTTGGTGGTTTCGAACACAACACATGTGGACACGTGGGACAACATGGTGCACAAGANATGACAGAGAATACCTTCGGACACG]




>consensus_5311#1
CAAGAATCGCCCCGAGGTGTTGAAAGCAAAACAACGTGCAAATGCAACGGTTCGATCCTA
CGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACC
GGAAAAAGGCAGAACGGCGGGAGGAAGATTTTTACACACACGNTTCTCCTTGCACTGCCA
ANACATGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGG
TCCCTGCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGCTNTTCCACTTGTTCTT
GGAACTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTG
AAAACGGTTGTACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTTCC
CTGGCGTACTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGACTGACAAGCGCAG
GAAAGGTCCTGGCAAATAAAAAAACAACCAAGGACAATGCAAAACAACANCACGGAAAAA
CGTTACAGAATCGGCCCCTGNAGACTTGGTGGTTTCGAACACAACACATGTGGACACGTG
GGACAACATGGTGCACAAGANATGACAGAGAATACCTTCGGACACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5311#0      AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGA 60
consensus_5311#1      ------------------------------------------------------------
                                                                                  

consensus_5311#0      TGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGA 120
consensus_5311#1      ------------------------------------------------------------
                                                                                  

consensus_5311#0      TGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTT 180
consensus_5311#1      ------------------------------------------------------------
                                                                                  

consensus_5311#0      GTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGA 240
consensus_5311#1      ------------------------------------------------------------
                                                                                  

consensus_5311#0      TGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGA 300
consensus_5311#1      ------------------------------------------------------------
                                                                                  

consensus_5311#0      AAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAA 360
consensus_5311#1      --------------------------------------------CAAGAATCGCCCCGAG 16
                                                                  * *  ** **    * 

consensus_5311#0      TCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGA 420
consensus_5311#1      --GTGTTGAAAGCAAAA-CAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGA 73
                        * ************* ******************************************

consensus_5311#0      ATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGA 480
consensus_5311#1      ATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGA 133
                      ************************************************************

consensus_5311#0      ACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTT 540
consensus_5311#1      ACGGCGGGAGGAAGATTTT--------TACACACACGNTTCTCCTTGCACTGCCAANACA 185
                      *******************        *   ** * * **  *  **    *   *    

consensus_5311#0      CTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGC 600
consensus_5311#1      TGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGGTCCCT 245
                        * *       *    *    ** *  * **      * * * *  *   * *  *   

consensus_5311#0      GAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAA 660
consensus_5311#1      GCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGC-TNTTCCACTTGTTCTTGGAA 304
                      *       * *      ** **   *   *** *    * *  * *  *    *   ***

consensus_5311#0      AAGTGATG--CCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAA 718
consensus_5311#1      CTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTG---A 361
                        *** **  *  * * **    *****   *  **  *     ** *  ** * *   *

consensus_5311#0      AAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAA 778
consensus_5311#1      AAACGGTTG---TACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTT 418
                      **** *  *    **  ** *******     ** ***      **  *   **      

consensus_5311#0      CTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGG 838
consensus_5311#1      CCCTGGCGTA------CTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGAC-TGA 471
                      *        *      * ** ** *      * **** *        * **** *  ** 

consensus_5311#0      CAAGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTC 898
consensus_5311#1      CAAGCGCAGGAAAGGT---CCTGGCAAATAA----------AAAAACAACCAAGGA---C 515
                      ****  *            ***  ***** *           *      ** ** *   *

consensus_5311#0      TAGGCTACGTTCCTAATACGGACGGCAGTT-TAAAATCAGCCAAGGAAGCGGTAGTCGGA 957
consensus_5311#1      AATGCAAAACAAC-ANCACGGAAAAACGTTACAGAATCGGCCCCTGNAGACTTGGTGGTT 574
                       * ** *     * *  *****     ***  * **** ***   * **   * ** *  

consensus_5311#0      TTGACCGAGACTGATGTGCAAAACATTCGCCAA--TTGTACAAAAAACGACGACAACGCG 1015
consensus_5311#1      TCGAACACAACACATGTG-GACACGTGGGACAACATGGTGCACAAGAN-ATGACA----G 628
                      * ** *   **  *****  * ** *  * ***  * ** ** ** *  * ****    *

consensus_5311#0      AAAGTAAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG 1068
consensus_5311#1      AGAATACCTTCGGACACG----------------------------------- 646
                      * * **  ** *  ***