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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 910 fasta sequence
[TTGCCCGAGGCTNAATAGAGAGTAGTTATTGTAAAAATTTACAATACAAGAAAGCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGCAAGCCCTATAGCAACGTGTAGCAACGCAACTGTGGCGTATCAACTTAGCACTGGGCTTGCTGCTGCAGACAGCGCGCGTTCTATACAACCTCTTCTCTACCTAAACACAACAGGACTACTGCACAGGCACACAGNATGGTACTGCCTAACACGGCTGCTCNCTACCACAANACCACTCTCCACCTCNNNTCNCCTTGGCTTCTTCCCGCACCTNGGCGTACTGCTANAACGCGAACCGTTTCGTGGGAACTCTNATAAAANACCCCTTCTTCTAACACCACCGANCCNACAACGGTGCCACACANGCCGCNTNCCGACAACCCTTTACCACCANCCCTTCCCGNCAACATTGGCCCTTTCCCCCCCTTNAAAGCGCCCCAAGTAGNAAGCGGACATAGGCCTCACACCATAGGGGCCTANACAAGCGGCGACAAAACACCACCCCATTTGGGGGGACACTACAGCACCCTACCGCCCGCACAGCGCTGGGCAACANCTTATAACACGACCGAAAACAAACCGGGCCAANCAAACCCCCCAACGACCTTAAAACCCGCCCGCTNTGGGTGCGACACCCCCGAGACCCCTATTTAAACGGAGCCNCGCACCCTCANAGACACCGACNAACGACCGCCCCCGCTTCCCCACACAACAGCCCGCCACGAACCCAAACCGCCCGGCGCANCCCCCTGACGCGAAACCAACGACCCCACGANCCCC]
[+] EMBL AL930457 [TTGCCCGAGGCTNAATAGAGAGTAGTTATTGTAAAAATTTACAATACAAGAAAGCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGCAAGCCCTATAGCAACGTGTAGCAACGCAACTGTGGCGTATCAACTTAGCACTGGGCTTGCTGCTGCAGACAGCGCGCGTTCTATACAACCTCTTCTCTACCTAAACACAACAGGACTACTGCACAGGCACACAGNATGGTACTGCCTAACACGGCTGCTCNCTACCACAANACCACTCTCCACCTCNNNTCNCCTTGGCTTCTTCCCGCACCTNGGCGTACTGCTANAACGCGAACCGTTTCGTGGGAACTCTNATAAAANACCCCTTCTTCTAACACCACCGANCCNACAACGGTGCCACACANGCCGCNTNCCGACAACCCTTTACCACCANCCCTTCCCGNCAACATTGGCCCTTTCCCCCCCTTNAAAGCGCCCCAAGTAGNAAGCGGACATAGGCCTCACACCATAGGGGCCTANACAAGCGGCGACAAAACACCACCCCATTTGGGGGGACACTACAGCACCCTACCGCCCGCACAGCGCTGGGCAACANCTTATAACACGACCGAAAACAAACCGGGCCAANCAAACCCCCCAACGACCTTAAAACCCGCCCGCTNTGGGTGCGACACCCCCGAGACCCCTATTTAAACGGAGCCNCGCACCCTCANAGACACCGACNAACGACCGCCCCCGCTTCCCCACACAACAGCCCGCCACGAACCCAAACCGCCCGGCGCANCCCCCTGACGCGAAACCAACGACCCCACGANCCCC]
consensusID : consensus_5312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[GGCCAAGAATCGGCACGANNGGCAGTGTCTTCTCAAGCAAAACACGCTACCGCCGGCAGTTGGGCTGAGAAAATTGTGCCCACCAACGGAACGCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCTTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCCAGACCGCTAACGCATCATAAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATGTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTCTAACTGTAACTAACAATTGAAACAAAACAAAACAGTAACCGAACACAAGAAAGTCANATTTAAGAGAACAGGAGATAAGAGAAACAGGATAACTAAATAGTAAAGAGAGTCATTGAGGAGTTATTGTAAAAAAGAAAGCAGAGTTACAGTAGAGAGTATTTAAAANACCANAAAAACCAAAGGTACGNTAAGCCAATGGGAANNAATGGACCGTAAAAAGCATGTTGTAAGCCCAATAACACGAAACAGTAAACCCAACCTAGNAAACGACGTATANAAAC]
[+] EMBL BX468378 [GGCCAAGAATCGGCACGANNGGCAGTGTCTTCTCAAGCAAAACACGCTACCGCCGGCAGTTGGGCTGAGAAAATTGTGCCCACCAACGGAACGCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCTTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCCAGACCGCTAACGCATCATAAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATGTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTCTAACTGTAACTAACAATTGAAACAAAACAAAACAGTAACCGAACACAAGAAAGTCANATTTAAGAGAACAGGAGATAAGAGAAACAGGATAACTAAATAGTAAAGAGAGTCATTGAGGAGTTATTGTAAAAAAGAAAGCAGAGTTACAGTAGAGAGTATTTAAAANACCANAAAAACCAAAGGTACGNTAAGCCAATGGGAANNAATGGACCGTAAAAAGCATGTTGTAAGCCCAATAACACGAAACAGTAAACCCAACCTAGNAAACGACGTATANAAAC]
consensusID : consensus_5312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence
[GCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGAAGCCCTATAGAACGTGTAGAAGAATGTGGCGTATCAATTAGACTGGGTTGCTGCTGCAGAAGCGCGCGTTTATACAACTTTTTACTAAACAAAAGATATGAAGCAAAATGTATGCTAAAGTGTTTACAAACATTCATTTTCTGTTCGATGTTTTAGATTGATTTAACTTTAAAACAAGCAACTCAATAAATCGATGCTCCTAGCAGGAGTGTATGTAAGAACTGTTTTCATGATAGAAGAACATACTGACATAGCCAAAACCTCAACAAACGACGAACTCGAACGCCCGGTTGAAGGAAACAATGAACAAACCAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATTTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTAATGTAACTAACAATTGAAACACGAAAACACGAGAAGATCACAAGTAAACCTACAAATTGCACTAGAAAAAGGAAAGCAAAATAAAAGGGGGAAGAAAGAATTAAGAAGCACAGAAGAATACAGAACATAGTAAGAGAATGTAAAGCATAAAAAACATATGA]
[+] EMBL BX622149 [GCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGAAGCCCTATAGAACGTGTAGAAGAATGTGGCGTATCAATTAGACTGGGTTGCTGCTGCAGAAGCGCGCGTTTATACAACTTTTTACTAAACAAAAGATATGAAGCAAAATGTATGCTAAAGTGTTTACAAACATTCATTTTCTGTTCGATGTTTTAGATTGATTTAACTTTAAAACAAGCAACTCAATAAATCGATGCTCCTAGCAGGAGTGTATGTAAGAACTGTTTTCATGATAGAAGAACATACTGACATAGCCAAAACCTCAACAAACGACGAACTCGAACGCCCGGTTGAAGGAAACAATGAACAAACCAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATTTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTAATGTAACTAACAATTGAAACACGAAAACACGAGAAGATCACAAGTAAACCTACAAATTGCACTAGAAAAAGGAAAGCAAAATAAAAGGGGGAAGAAAGAATTAAGAAGCACAGAAGAATACAGAACATAGTAAGAGAATGTAAAGCATAAAAAACATATGA]
consensusID : consensus_5312#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[TAATATGCGATGGCATTTGGGCGAATCGGTTGGGGCAATTTGATGGAAGCTAAAACGAATTAATAAAGCGAAAAACTCCCCAAACTGTAGGCAATTTCGGGTGTTGATAATCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCCTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCTAGACCGGTAAGTGTTTGAATGTGTGAACGCGCCCCGCCCGAACCATTCTATTGCAGTTGAATTATTCCCACTCATCGCGCTCAAGTGCGCAGTGCGTTTAAGG]
[+] EMBL CNS08NLW [TAATATGCGATGGCATTTGGGCGAATCGGTTGGGGCAATTTGATGGAAGCTAAAACGAATTAATAAAGCGAAAAACTCCCCAAACTGTAGGCAATTTCGGGTGTTGATAATCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCCTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCTAGACCGGTAAGTGTTTGAATGTGTGAACGCGCCCCGCCCGAACCATTCTATTGCAGTTGAATTATTCCCACTCATCGCGCTCAAGTGCGCAGTGCGTTTAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5312#1 ------------------------------------------------------------
consensus_5312#3 ------------------------------------------------------------
consensus_5312#2 -----------------------------------------------------GCAGATT 7
consensus_5312#0 TTGCCCGAGGCTNAATAGAGAGTAGTTATTGTAAAAATTTACAATACAAGAAAGCAGATT 60
consensus_5312#1 --------------------------------GGCCAAGAATCGGCACGANNG--GCAGT 26
consensus_5312#3 ---------------------TAATATGCGATGGCATTTGGGCGAATCGGTTGGGGCAAT 39
consensus_5312#2 ACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCAT 67
consensus_5312#0 ACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCAT 120
** *
consensus_5312#1 GTCTTCTCAAGCAAAACACGCTACC---GCCGGCAGTTGGG---------CTGA--GAAA 72
consensus_5312#3 TTGATGGAAGCTAAAACGAATTAATAAAGCGAAAAACTCCC---------CAAACTGTAG 90
consensus_5312#2 GTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAAC 127
consensus_5312#0 GTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAAC 180
* * **** ** * * * * * *
consensus_5312#1 ATTG-TGCC-CACCAACGGAA-CGCGGACTGAAG----ATCACATCCAATTGACCTAC-A 124
consensus_5312#3 GCAA-TTTC-GGGTGTTGATA-ATCGGACTGAAG----ATCACATCCAATTGACCTAC-A 142
consensus_5312#2 ATAAACGAG-AAGCCCTATAG-AACGTGTAGAAG----AATGTGGCGTATCAAT-TAG-A 179
consensus_5312#0 ATAAACGAGCAAGCCCTATAGCAACGTGTAGCAACGCAACTGTGGCGTATCAACTTAGCA 240
** * * * * ** * ** *
consensus_5312#1 TTTGA-CTCTTGCTTCA-----CGCTGCAG-GAAGTGGCTGTTTGTTGGTTAAAA-ATA- 175
consensus_5312#3 TTTGA-CTCTTGCCTCA-----CGCTGCAG-GAAGTGGCTGTTTGTTGGTTAAAA-ATA- 193
consensus_5312#2 CTGGG-TTGCTGCTGCAGA-AGCGCGCGTT-TATACAACTTTTTACTAAACAAAAGATAT 236
consensus_5312#0 CTGGGCTTGCTGCTGCAGACAGCGCGCGTTCTATACAACCTCTTCTCTACCTAAACACA- 299
* * * *** ** *** * * ** *** * *
consensus_5312#1 GAAACGCCAGCCTTACCAGTGTGCC-ATTGGCGTGAACTCTCCCGGCAA-GCTTCAGGT- 232
consensus_5312#3 GAAACGCCAGCCTTACCAGTGTGCC-ATTGGCGTGAACTCTCCCGGCAA-GCTTCAGGT- 250
consensus_5312#2 GAAGCAAAATGTATGCTAAAGTGTTTACAAACATTCATTTTCTGTTCGATGTTTTAGATT 296
consensus_5312#0 -ACAGGACTACTGCACAGGCACACAGNATGGTACTGCCTAACACGGCTGCTCNCTACCAC 358
* * * * * *
consensus_5312#1 GACCAGAT----GAGCTAACACCACGCTAAGCTAG----CCGATCGGAAGCGCTGATAA- 283
consensus_5312#3 GACCAGAT----GAGCTAACACCACGCTAAGCTAG----CCGATCGGAAGCGCTGATAA- 301
consensus_5312#2 GATTTAACTTTAAAACAAGCAACTCAATAAATCGATGCTCCTAGCAGGAGTGTATGTAAG 356
consensus_5312#0 AANACCACTCTCCACCTCNNNTCNCCTTGGCTTCTTCCCGCACCTNGGCGTACTGCTAN- 417
* * * * * * * * * * **
consensus_5312#1 AGCCAACTGCAC--TTGAGCAGCA-----GCAGCAGCGGTGCATCGA-----GGCGGTGT 331
consensus_5312#3 AGCCAACTGCAC--TTGAGCAGCA-----GCAGCAGCGGTGCATCGA-----GGCGGTGT 349
consensus_5312#2 AACTGTTTTCATGATAGAAGAACATACTGACATAGCCAAAACCTCAACAAACGACGAACT 416
consensus_5312#0 AACGCGAACCGTTTCGTGGGAACTCTNATAAAANACCCCTTCTTCTAACACCACCGANCC 477
* * * * * * * * ** * **
consensus_5312#1 C--ATCCCTGCCCCA--GACCGCTAACGCATCA-TAAAAAGAGTAAACAATAGAAAAGGA 386
consensus_5312#3 C--ATCCCTGCCCTA--GACCGGTAA---GTGT-TTGAATGTGTGAACGCGCCCCGCCCG 401
consensus_5312#2 CGAACGCCCGGTTGA--AGGAAACAATGAACAAACCAAAAGAGTAAACAATAGAAAAGGA 474
consensus_5312#0 NACAACGGTGCCACACANGCCGCNTNCCGACAACCCTTTACCACCANCCCTTCCCGNC-A 536
* * * * *
consensus_5312#1 AGAAAAGAAAATGTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATG 446
consensus_5312#3 AACCATTCTATTGCAGTTGAATTATT----CCCACTCATCG--CGCTCAAGTGCGCAGTG 455
consensus_5312#2 AGAAAAGAAAATTTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATG 534
consensus_5312#0 ACATTGGCCCTTTCCCCCCCTTNAAAGCGCCCCAAGTAGNAAGCGGACATAGGCCTCACA 596
* * * * ** * * * *
consensus_5312#1 TGTAGAAACGTGGCAACACAACTAAC-AGAAAACACTATGCTTTTTCTAACTGTAACTAA 505
consensus_5312#3 CGTTTAAGG--------------------------------------------------- 464
consensus_5312#2 TGTAGAAACGTGGCAACACAACTAAC-AGAAAACACTATGCTTTTT---AATGTAACTAA 590
consensus_5312#0 C---CATAGGGGCCTANACAAGCGGCGACAAAACACCACCCCATTTGGGGGGACACTACA 653
*
consensus_5312#1 CAATTGAAACAAAACAAAACAGTAACCGAACACAAGAAAGTCANATTTAAGAGAACAGGA 565
consensus_5312#3 ------------------------------------------------------------
consensus_5312#2 CAATTGAAACACGA-------------AAACACGAGAAGATCACAAGTAAACCTACAAAT 637
consensus_5312#0 GCACCCTACCGCCCGCACAGCGCTGGGCAACANCTTATAA-CACGACCGAAAACAAACCG 712
consensus_5312#1 GATAAGAGAAACAGGATAACTAAATAGTAAAGAGAGTCATTGAGGAGTTATTGTAAAAAA 625
consensus_5312#3 ------------------------------------------------------------
consensus_5312#2 TGCACTAGAAAAAGGAAAGCAAAATAAAAGGGGGAAGAAAGAATTAAGAA--GCACAGAA 695
consensus_5312#0 GGCCAANCAAACCCCCCAACGACCTTAAAACCCGCCCGCTNTGGGTGCGACACCCCCGAG 772
consensus_5312#1 GAAAGCAGAGTTACAGTAGAGAGTATTTAAAANACCANAAAAACCAAAGGTACGNTAAGC 685
consensus_5312#3 ------------------------------------------------------------
consensus_5312#2 GAATACAGAAC-ATAGTA-AGAGAATGTAAAGCATAAAAAACATATGA------------ 741
consensus_5312#0 ACCCCTATTTAAACGGAGCCNCGCACCCTCANAGACACCGACNAACGACCGCCCCCGCTT 832
consensus_5312#1 CAATGGGAANNAATGGACCGTAAAAAGCATGTTGTAAGCCCAATAACACGAAACAGTAAA 745
consensus_5312#3 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 CCCCACACAACAGCCCGCCACGAACCCAAACCGCCCGGCGCANCCCCCTGACGCGAAACC 892
consensus_5312#1 CCCAACCTAGNAAACGACGTATANAAAC 773
consensus_5312#3 ----------------------------
consensus_5312#2 ----------------------------
consensus_5312#0 AACGACCCCACGANCCCC---------- 910
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||