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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 957 fasta sequence
[CGAAGGGTATTAAAAGTGTAAATTGATTCCCATTTTTATTGTGCC-G-CCTCCCGATCTG-GGGAGAGAACGAAACAAGTTCTCTTAATCACTACAAAGTATACTCTGACAGACATAAAA-ACATCCTTTTAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGACAGAGCAA-CCCAACT--CCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGAC-TCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATTGGAATGACGGAACAGGGGACGCAGAAGACACTCAGCTCGAGTGGTAGTACACTGCCCGCCAGCAGTCCCGTCATCTGGGCGATCCAGCTGGTGAAGATACAGATGCTCCACAGCATTACGATGCGATCGCGGTCCATTGGTTGGGAGGTTAGGTAGTAAGCACCGGCAAGGAATACGGATGGACCCAGTATCAGAAATGGAAAGTCCGCCACTAGCTTGGAGAAGTAATAGGCCTTAAGTGAGTACCAGTTGTTCATTCTCTCCCGAACAAACACAGACGTCTCCAGAGGGAACGTCATGACTAAAGGCATCGAGTTGGCGAAGAATACAAAAATAAGGAAGAAGAACAGGCAAGACGCATTGCTCAGCATCTTCGATCCATCGTTACCGACGTCGTAAAACACGACCGCG]
[-] EMBL BM636490 [CGAAGGGTATTAAAAGTGTAAATTGATTCCCATATTTATTGTGCCAC CCTCCCGATTTGAGGGGGAGAACGAAACAAGTTCTCTTAATCACTAAAAAGTATACTCTGACAGACATAAAA ACATCCTTTAAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGATAGAGCAACCCCAATTTCCCCCCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGACGTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCCAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATTGGAATGACGGAACAGGGGACGCAGAAGACACTCAGCTCGAGTGGTAGTACACTGCCCGCCAGCAGTCCCGTCATCTGGGCGATCCAGCTGGTGAAGATACAGATGCTCCACAGCATTACGATGCGATCGCGG ]
[+] EMBL CNS08W94 [ TGAT CCATTTTTATTGTGCC G CCTCCCGATCTG GGGAGAGAACGAAACAAGTTCTCTTAATCACTACAAAGTATACTCTGACAGACATAAAACACCCCCGGTTAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGACAGAGCAA CCCAACT CCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGAC TCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGAGCAGGGTAGATTCGCACGATCG TCCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATCGGAATGACGGAACACGGGACGCAGAAGACGCTCAGCTCGAGTGGTAGCACACTGCCCGCCAGCAGTCCCGTCATCTGGGCGATCCAGCTAGTGAAGATACAGATGCTCCACAGCATTACGATGCGATCGAGCTCCATTGGTTGGGAGGTTAGGTAGTAAGCACCGGCAAGGAATACGGATGGACCCAGTATCAGAAATGGAAAGTCCGCCACTAGCTTGGAGAAGTAATAGGCCTTAAGTGAGTACCAGTTGTTCATTCTCTCCCGAACAAACACAGACGTCTCCAGAGGGAACGTCATGACTAAAGGCATCGAGTTGGCGAAGAATACAAAAATAAGGAAGAAGAACAGGCAAGACGCATTGCTCAGCATCTTCGATCCATCGTTACCGACGTCGTAAAACACGACCGCG]
[+] EMBL CNS08ZID [ CATTTTTATTGTGCC GCCCTCCCGATCTG GGGAGAGAACGAAACAAGTTCTCTTAATCACTACAAAGTATACTCTGACAGACATAAAA ACATCCTTTTAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGACAGAGCAA CCCAACT CCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGAC TCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGCCCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGAT ]
consensusID : consensus_5313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[ACGCGAACTGATGGAATAATTTAAACCAGCAAATGCCTGCAAACACCACAACGTGCACAACGCGTGTTATGCAAATGTGTCCGTCATCACGTGTCGCTTCACATGGCGCGAAGGGTATTAAAAGTGGTAAATTGATTCCCATTTTTTATTGTGCCACCACTCCCGATCTGGGGGGAGAACGAAACAAGTTCTCTTAATCAGCTAAAAAGTATACTCTGACAGACATAAGAAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGATAGACAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATATCGAAGCTGTCCAGAAATTTGGNCACCTTGNTAAAGTAGCAGAATATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGCAACGTACGTGAACGGAATGAGAAAGTCAAACATTCACGAAGCGGATAAACCTGCGGG]
[-] EMBL AL930482 [ACGCGAACTGATGGAATAATTTAAACCAGCAAATGCCTGCAAACACCACAACGTGCACAACGCGTGTTATGCAAATGTGTCCGTCATCACGTGTCGCTTCACATGGCGCGAAGGGTATTAAAAGTGGTAAATTGATTCCCATTTTTTATTGTGCCACCACTCCCGATCTGGGGGGAGAACGAAACAAGTTCTCTTAATCAGCTAAAAAGTATACTCTGACAGACATAAGAAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGATAGACAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATATCGAAGCTGTCCAGAAATTTGGNCACCTTGNTAAAGTAGCAGAATATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGCAACGTACGTGAACGGAATGAGAAAGTCAAACATTCACGAAGCGGATAAACCTGCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5313#0 ------------------------------------------------------------
consensus_5313#1 ACGCGAACTGATGGAATAATTTAAACCAGCAAATGCCTGCAAACACCACAACGTGCACAA 60
consensus_5313#0 ------------------------------------------------CGAAGGGTATTA 12
consensus_5313#1 CGCGTGTTATGCAAATGTGTCCGTCATCACGTGTCGCTTCACATGGCGCGAAGGGTATTA 120
************
consensus_5313#0 AAAGTG-TAAATTGATTCCCATTTTT-ATTGTGCCGCC--TCCCGATCTGGGGAGAGAAC 68
consensus_5313#1 AAAGTGGTAAATTGATTCCCATTTTTTATTGTGCCACCACTCCCGATCTGGGGGGAGAAC 180
****** ******************* ******** ** ************* ******
consensus_5313#0 GAAACAAGTTCTCTTAATCA-CTACAAAGTATACTCTGACAGACATAAAAACATCCTTTT 127
consensus_5313#1 GAAACAAGTTCTCTTAATCAGCTAAAAAGTATACTCTGACAGACATAAGAA--------- 231
******************** *** *********************** **
consensus_5313#0 AAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACA 187
consensus_5313#1 -------ACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACA 284
*****************************************************
consensus_5313#0 AGTGTCACTAGGGACAGAGCAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTC 247
consensus_5313#1 AGTGTCACTAGGGATAGA-CAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTC 343
************** *** *****************************************
consensus_5313#0 GCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGA 307
consensus_5313#1 GCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGA 403
************************************************************
consensus_5313#0 GCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACT 367
consensus_5313#1 GCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATATCGAAGCTGTCCAGAAATT 463
**************************************** *********** ***** *
consensus_5313#0 TGGGCACCTTGCTAAAGTAGCAGAA-ATCACCCGAGCAGGGTAGATTCGCACGATCGAAC 426
consensus_5313#1 TGGNCACCTTGNTAAAGTAGCAGAATATCACCCGAGCAGGGTAGATTCGCACGATCGAAC 523
*** ******* ************* **********************************
consensus_5313#0 CCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAAC 486
consensus_5313#1 CCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAG-CAACGTACGTGAAC 582
********************************************* **************
consensus_5313#0 GGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATT 546
consensus_5313#1 GGAATGAGAAAGTCAAACAT-TCACG-AAGCGGATA---AACCTGCGGG----------- 626
******************** ***** ******* * **** **
consensus_5313#0 GGAATGACGGAACAGGGGACGCAGAAGACACTCAGCTCGAGTGGTAGTACACTGCCCGCC 606
consensus_5313#1 ------------------------------------------------------------
consensus_5313#0 AGCAGTCCCGTCATCTGGGCGATCCAGCTGGTGAAGATACAGATGCTCCACAGCATTACG 666
consensus_5313#1 ------------------------------------------------------------
consensus_5313#0 ATGCGATCGCGGTCCATTGGTTGGGAGGTTAGGTAGTAAGCACCGGCAAGGAATACGGAT 726
consensus_5313#1 ------------------------------------------------------------
consensus_5313#0 GGACCCAGTATCAGAAATGGAAAGTCCGCCACTAGCTTGGAGAAGTAATAGGCCTTAAGT 786
consensus_5313#1 ------------------------------------------------------------
consensus_5313#0 GAGTACCAGTTGTTCATTCTCTCCCGAACAAACACAGACGTCTCCAGAGGGAACGTCATG 846
consensus_5313#1 ------------------------------------------------------------
consensus_5313#0 ACTAAAGGCATCGAGTTGGCGAAGAATACAAAAATAAGGAAGAAGAACAGGCAAGACGCA 906
consensus_5313#1 ------------------------------------------------------------
consensus_5313#0 TTGCTCAGCATCTTCGATCCATCGTTACCGACGTCGTAAAACACGACCGCG 957
consensus_5313#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||