cluster # 5314

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5314 cluster # 5314 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5314#0 length = 869 sequences # 2

consensus_5314#1 length = 832 sequences # 1
consensus_5314#2 length = 156 sequences # 1

consensusID : consensus_5314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 869
fasta sequence

                              [GCATCACGGTTACCGGCGGCCGGGCCAGGGCGGAAGCGAAAGCGGAGCACGCCCGGCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACGGGGAGCCGGGCGGCGAGGTGCGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGAAGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCGGAGGGCGCGGGGGAAGCTCCAGCAGCGGTGGGTCGGGCACGAACGCACGCCAGACGGCCACACCGGCGAATGGGAACGGTGGCGGCACGGGCGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAAGATCGAGATAGTGACGCCATACTGGGCGACGAATTCGGCCGGCAAGGTGCGCGCCATCGTCAACACGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTC---TAAAACCCAAACGAACCGTTGCTCCGGCGACTGTGGCTGTGAGCAGAAGTACAAATGGCACCGACTGCTAGCGTACGATCCGGACAACGACTGTAAGGGCATCTTTATGGACTGGTTCCTGTTTCCGTCCTGCTGCGTCTGCCGGTGTAATCCTTAGCTGCTGCGCGCCTGTCACACCTGTGGTCCGAGGAGACACCAAATTGAATTGAGATTTTTGTTTATTCGTCTGTTAGAGGGAGAGAGAGGATGAGCCCAAAACCAACCAAGTCCAAGGGTGTTTAAGACACCATCGCTCTGCGTTCCGACGCACTTTTAGTTTGTCATCGCTGTTAGTTTGTATCACTTTCTTTTCCAATTTCTTTCCATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCATCTATCCGGTTTTATTCTGCTCT]

[+] EMBL BX620527             [GCATCACGGTTACCGGCGGCCGGGCCAGGGCGGAAGCGAAAGCGGAGCACGCCCGGCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACGGGGAGCCGGGCGGCGAGGTGCGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGAAGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCGGAGGGCGCGGGGGAAGCTCCAGCAGCGGTGGGTCGGGCACGAACGCACGCCAGACGGCCACACCGGCGAATGGGAACGGTGGCGGCACGGGCGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAAGATCGAGATAGTGACGCCATACTGGGCGACGAATTCGGCCGGCAAGGTGCGCGCCATCGTCAACACGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTC   TAAAACCCAAACGAACCGTTGCTCCGGCGACTGTGGCTGTGAGCAGAAGTACAAATGGCACCGACTGCTAGCGTACGATCCGGACAACGACTGTAAGGGCATCTTTATGGACTGGTTCCTGTTTCCGTCCTGCTGCGTCTGCCGGTGTAATCCTTAGCTGCTGCGCGCCTGTCACACCTGTGGTCCGAGGAGACACCAAATTGAATTGAGATTTT                                                                                                                                                                                                                ]
[+] EMBL BX620612             [                                                                                                                                   GGTACGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGAAGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCGGAGGGCGCGGGGGAAGCTCCAGCAGCGGTGGGTCGGGCACGAACGCACGCCAGACGGCCACACCGGCGAATGGGAACGGTGGCGGCACGGGCGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAAGATCGAGATAGTGACGCCATACTGGGCGACGAATTCGGCCGGCAAGGTGCGCGCCATCGTCAACACGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTCCAGTAAAACCCAAACGAACCGTTGCTCCGGCGACTGTGGCTGTGAGCAGAAGTACAAATGGCACCGACTGCTAGCGTACGATCCGGACAACGACTGTAAGGGCATCTTTATGGACTGGTTCCTGTTTCCGTCCTGCTGCGTCTGCCGGTGTAATCCTTAGCTGCTGCGCGCCTGTCACACCTGTGGTCCGAGGAGACACCAAATTGAATTGAGATTTTTGTTTATTCGTCTGTTAGAGGGAGAGAGAGGATGAGCCCAAAACCAACCAAGTCCAAGGGTGTTTAAGACACCATCGCTCTGCGTTCCGACGCACTTTTAGTTTGTCATCGCTGTTAGTTTGTATCACTTTCTTTTCCAATTTCTTTCCATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCATCTATCCGGTTTTATTCTGCTCT]




>consensus_5314#0
GCATCACGGTTACCGGCGGCCGGGCCAGGGCGGAAGCGAAAGCGGAGCACGCCCGGCGAT
CCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACGGGGAG
CCGGGCGGCGAGGTGCGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGAAGCGC
CAGAACACCAGCTCCCGGGGCAGCAGTAGCGGAGGGCGCGGGGGAAGCTCCAGCAGCGGT
GGGTCGGGCACGAACGCACGCCAGACGGCCACACCGGCGAATGGGAACGGTGGCGGCACG
GGCGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAAGATCGAGATAGTGACGCCA
TACTGGGCGACGAATTCGGCCGGCAAGGTGCGCGCCATCGTCAACACGCAACACTTTGAG
CAGGCGATCCACCAGGAAGTGTGTTCTAAAACCCAAACGAACCGTTGCTCCGGCGACTGT
GGCTGTGAGCAGAAGTACAAATGGCACCGACTGCTAGCGTACGATCCGGACAACGACTGT
AAGGGCATCTTTATGGACTGGTTCCTGTTTCCGTCCTGCTGCGTCTGCCGGTGTAATCCT
TAGCTGCTGCGCGCCTGTCACACCTGTGGTCCGAGGAGACACCAAATTGAATTGAGATTT
TTGTTTATTCGTCTGTTAGAGGGAGAGAGAGGATGAGCCCAAAACCAACCAAGTCCAAGG
GTGTTTAAGACACCATCGCTCTGCGTTCCGACGCACTTTTAGTTTGTCATCGCTGTTAGT
TTGTATCACTTTCTTTTCCAATTTCTTTCCATTTTTACGCTGTATGTGTTATTTTGTAAA
GCATCATCTATCCGGTTTTATTCTGCTCT

consensusID : consensus_5314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence

                              [TCCCCCGAGGTTTAACAGCAACAGCAGCAACATTCTATTCAGTACCTATTCTACGACAAGATTGAGATGTTCATCGACGAGAACAAAGCACTAATGAAGCGAATGTACGGTGACTTCGAGATGGCATACACGGTTACCATACCGCCGGGCCGGGACGGAAGCGAAAGCGGAGCGCGCTAGGCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACGGGGAGCCGGGCGGCGAGGTACGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGAAGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCTGGAGTGGCTGCGNGNGGTGAAGCTCCAGCAGCGGTGGGTCGGGCACGAACTGCACGCCAGACGGCCACACCTGGCGAATGGGAACGGTGGCTGTGCNACGGGCTGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAACGATCGAGATAGTGACGCCATACTGGGCGACGACATTCGGCCGGCAAGGTGCGCGCCATCGTCAACACCGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTCCAGTAAAACCCAAACGAACCCGTTGCTCCGGCGACTGTGGTGTGAGGCCAGAAGTNCACAATGGCACCGACTAGCTAGCAGTTACGATCCGGACAAANGACTTGTCAAGGGCATCTTTATAATGNANCTGGGTTNCCTGTATACCGTCCTGGTGCGTCCTTGCCGTGNGTAAATCCTTTAAGATTGGCTGCGCGCCTGTCAAACCTTGGTGGNNCCAGAAGGAAACACCAATTGGAATTGGAAAAT]

[+] EMBL AL930526             [TCCCCCGAGGTTTAACAGCAACAGCAGCAACATTCTATTCAGTACCTATTCTACGACAAGATTGAGATGTTCATCGACGAGAACAAAGCACTAATGAAGCGAATGTACGGTGACTTCGAGATGGCATACACGGTTACCATACCGCCGGGCCGGGACGGAAGCGAAAGCGGAGCGCGCTAGGCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACGGGGAGCCGGGCGGCGAGGTACGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGAAGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCTGGAGTGGCTGCGNGNGGTGAAGCTCCAGCAGCGGTGGGTCGGGCACGAACTGCACGCCAGACGGCCACACCTGGCGAATGGGAACGGTGGCTGTGCNACGGGCTGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAACGATCGAGATAGTGACGCCATACTGGGCGACGACATTCGGCCGGCAAGGTGCGCGCCATCGTCAACACCGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTCCAGTAAAACCCAAACGAACCCGTTGCTCCGGCGACTGTGGTGTGAGGCCAGAAGTNCACAATGGCACCGACTAGCTAGCAGTTACGATCCGGACAAANGACTTGTCAAGGGCATCTTTATAATGNANCTGGGTTNCCTGTATACCGTCCTGGTGCGTCCTTGCCGTGNGTAAATCCTTTAAGATTGGCTGCGCGCCTGTCAAACCTTGGTGGNNCCAGAAGGAAACACCAATTGGAATTGGAAAAT]




>consensus_5314#1
TCCCCCGAGGTTTAACAGCAACAGCAGCAACATTCTATTCAGTACCTATTCTACGACAAG
ATTGAGATGTTCATCGACGAGAACAAAGCACTAATGAAGCGAATGTACGGTGACTTCGAG
ATGGCATACACGGTTACCATACCGCCGGGCCGGGACGGAAGCGAAAGCGGAGCGCGCTAG
GCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACG
GGGAGCCGGGCGGCGAGGTACGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGA
AGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCTGGAGTGGCTGCGNGNGGTGAAGCT
CCAGCAGCGGTGGGTCGGGCACGAACTGCACGCCAGACGGCCACACCTGGCGAATGGGAA
CGGTGGCTGTGCNACGGGCTGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAACG
ATCGAGATAGTGACGCCATACTGGGCGACGACATTCGGCCGGCAAGGTGCGCGCCATCGT
CAACACCGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTCCAGTAAAACCCAAA
CGAACCCGTTGCTCCGGCGACTGTGGTGTGAGGCCAGAAGTNCACAATGGCACCGACTAG
CTAGCAGTTACGATCCGGACAAANGACTTGTCAAGGGCATCTTTATAATGNANCTGGGTT
NCCTGTATACCGTCCTGGTGCGTCCTTGCCGTGNGTAAATCCTTTAAGATTGGCTGCGCG
CCTGTCAAACCTTGGTGGNNCCAGAAGGAAACACCAATTGGAATTGGAAAAT

consensusID : consensus_5314#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [CCGCCCACGCGTCCGCCGACGCACTTTTAGTTTGTATCGCTTTCTTTTCCAATTTCTTTCCATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCATCTATCCGTTTTTATTCTGCTCTCAAGCATAACAATAAATGTGGAAACTACTTACTATG]

[+] EMBL BM585122             [CCGCCCACGCGTCCGCCGACGCACTTTTAGTTTGTATCGCTTTCTTTTCCAATTTCTTTCCATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCATCTATCCGTTTTTATTCTGCTCTCAAGCATAACAATAAATGTGGAAACTACTTACTATG]




>consensus_5314#2
CCGCCCACGCGTCCGCCGACGCACTTTTAGTTTGTATCGCTTTCTTTTCCAATTTCTTTC
CATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCATCTATCCGTTTTTATTCTGCTCT
CAAGCATAACAATAAATGTGGAAACTACTTACTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5314#0      ------------------------------------------------------------
consensus_5314#1      TCCCCCGAGGTTTAACAGCAACAGCAGCAACATTCTATTCAGTACCTATTCTACGACAAG 60
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      ------------------------------------------------------------
consensus_5314#1      ATTGAGATGTTCATCGACGAGAACAAAGCACTAATGAAGCGAATGTACGGTGACTTCGAG 120
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      ---GCAT-CACGGTTACCG-GCGGCCGGGCCAGGGCGGAAGCGAAAGCGGAGCACGCCCG 55
consensus_5314#1      ATGGCATACACGGTTACCATACCGCCGGGCCGGGACGGAAGCGAAAGCGGAGCGCGCTAG 180
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      GCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACG 115
consensus_5314#1      GCGATCCGTACGACGATGGCGACGACTTTACGCTGCTGCCCGAGCTGATGGACCTGTACG 240
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      GGGAGCCGGGCGGCGAGGTGCGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGA 175
consensus_5314#1      GGGAGCCGGGCGGCGAGGTACGGATCGGGGGCGACTCGTACTTCAGCAAGCTGCGCAAGA 300
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      AGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCGGAGG-----GCGCGGGG-GAAGCT 229
consensus_5314#1      AGCGCCAGAACACCAGCTCCCGGGGCAGCAGTAGCTGGAGTGGCTGCGNGNGGTGAAGCT 360
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      CCAGCAGCGGTGGGTCGGGCACGAAC-GCACGCCAGACGGCCACACC-GGCGAATGGGAA 287
consensus_5314#1      CCAGCAGCGGTGGGTCGGGCACGAACTGCACGCCAGACGGCCACACCTGGCGAATGGGAA 420
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      CGGTGGCGG---CACGGGC-GAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAA-G 342
consensus_5314#1      CGGTGGCTGTGCNACGGGCTGAATCCAACACGGGCAGGGTTGATGCGTGCGAATCGAACG 480
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      ATCGAGATAGTGACGCCATACTGGGCGACGA-ATTCGGCCGGCAAGGTGCGCGCCATCGT 401
consensus_5314#1      ATCGAGATAGTGACGCCATACTGGGCGACGACATTCGGCCGGCAAGGTGCGCGCCATCGT 540
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      CAACAC-GCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTC---TAAAACCCAAA 457
consensus_5314#1      CAACACCGCAACACTTTGAGCAGGCGATCCACCAGGAAGTGTGTTCCAGTAAAACCCAAA 600
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      CGAACC-GTTGCTCCGGCGACTGTGGC-TGTGAGCAGAAGTACA-AATGGCACCGACT-G 513
consensus_5314#1      CGAACCCGTTGCTCCGGCGACTGTGGTGTGAGGCCAGAAGTNCACAATGGCACCGACTAG 660
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      CTAGCG--TACGATCCGGACAA-CGACTG--TAAGGGCATC--TTTAT----GGACTGG- 561
consensus_5314#1      CTAGCAGTTACGATCCGGACAAANGACTTGTCAAGGGCATC--TTTATAATGNANCTGGG 718
consensus_5314#2      ---CCGCCCACGCGTCCGCCGACGCACTTTTAGTTTGTATCGCTTTCTTTTCCAATTTCT 57
                          *    ***   * * * *   ***        * ***  *** *        *   

consensus_5314#0      -TTCCTGTTT-CCGTCCTGCTGCGTC--TGCCG-GTGTAA-TCCTT----AGCTGCTGCG 611
consensus_5314#1      TTNCCTGTATACCGTCCTGGTGCGTCCTTGCCGTGNGTAAATCCTTTAAGATTGGCTGCG 778
consensus_5314#2      TTCCATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCA-TCTATCCGTTTTTATTCTG 116
                       * * * * * *  *     **      **    *  * * **  *          *  *

consensus_5314#0      CGCCTGTCACACCT--GTGGTCC---GAGGAGACACCAAATTGAATTGAGATTTTTGTTT 666
consensus_5314#1      CGCCTGTCAAACCTTGGTGGNNCCAGAAGGAAACACCAATTGGAATTGGAAAAT------ 832
consensus_5314#2      CTC---TCAAGCAT-AACAATAAATGTGGAAACTACTTACTATG---------------- 156
                      * *   ***  * *              * *   **  * *                   

consensus_5314#0      ATTCGTCTGTTAGAGGGAGAGAGAGGATGAGCCCAAAACCAACCAAGTCCAAGGGTGTTT 726
consensus_5314#1      ------------------------------------------------------------
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      AAGACACCATCGCTCTGCGTTCCGACGCACTTTTAGTTTGTCATCGCTGTTAGTTTGTAT 786
consensus_5314#1      ------------------------------------------------------------
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      CACTTTCTTTTCCAATTTCTTTCCATTTTTACGCTGTATGTGTTATTTTGTAAAGCATCA 846
consensus_5314#1      ------------------------------------------------------------
consensus_5314#2      ------------------------------------------------------------
                                                                                  

consensus_5314#0      TCTATCCGGTTTTATTCTGCTCT 869
consensus_5314#1      -----------------------
consensus_5314#2      -----------------------