These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 863 fasta sequence [GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACAGCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGAT-ACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA] [+] EMBL AL932069 [GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACAGCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGG CACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGA CGGCTGCGCCAT ] [+] EMBL BM617968 [ ccgAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGAT ACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA] [+] EMBL BM607120 [ ccgAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCGGATC TTCGC CGGTGTCGAAGATG CTGAA CCCGCTGTGGCCGATAACGGTT CGCGGGACCGTAC GGGCCGTCGCTTGGTG AGCCGGTTCCGGC AGGAC TTTGGGGATGAAGTTTT CCAACG TCATCACG ] consensusID : consensus_5317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGAACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAGCTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCGCTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC] [+] EMBL AL930537 [ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGAACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAGCTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCGCTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5317#0 ---------------------------GATCCCCCGAGGTTNGGTTGGAA-GTGACTCGA 32 consensus_5317#1 ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGA 60 * **** * ******** ********* consensus_5317#0 ACGCGCAGCGATGG-CAGCG-GAAGC-GACAGCGACAGCACCGAC-GGCAGCATTCGACC 88 consensus_5317#1 ACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACC 120 ************* ***** ***** ****************** ************** consensus_5317#0 AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAA-GGCTGGTTCAACTGG 147 consensus_5317#1 AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGG 180 ******************************************** *************** consensus_5317#0 TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG 207 consensus_5317#1 TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG 240 ************************************************************ consensus_5317#0 AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG 267 consensus_5317#1 AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG 300 ************************************************************ consensus_5317#0 ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCG-TGCTGGTGCACGG 326 consensus_5317#1 ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAG 360 ********************************************** **** * * * * consensus_5317#0 GCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCC 386 consensus_5317#1 CT----GGTGCTCGGCGTGCTGTGCGCGTCGC-TGCTGTGGCG-TTGCTTG---ACACCC 411 ** * ** ** ****** * * * ** *** * ** * * ** consensus_5317#0 GGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGA 446 consensus_5317#1 CTTGCAC-CGCT--GCTCGCCCCGCGCCACGCN-GGCCTGGTGTACTGCGACTCGACTGT 467 ** ** ** * * ** * * * ** ** * * * ** *** ** * consensus_5317#0 CCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAA 506 consensus_5317#1 GCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC---------- 517 ** *** ** *** ** * * * * * * * consensus_5317#0 CCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGC 566 consensus_5317#1 ------------------------------------------------------------ consensus_5317#0 GCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGA 626 consensus_5317#1 ------------------------------------------------------------ consensus_5317#0 GAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCG 686 consensus_5317#1 ------------------------------------------------------------ consensus_5317#0 CGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGATACGGTTTCCCCGGGACCGTACG 746 consensus_5317#1 ------------------------------------------------------------ consensus_5317#0 GGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAA 806 consensus_5317#1 ------------------------------------------------------------ consensus_5317#0 CGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA 863 consensus_5317#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||