These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CGACCCACGCGTCCGAAGTTTTCTAATTGGAAAACTGGTGGAAAACGAGCGAAAGAGAAGGTTGCAGATAGGGATCAGAACAATTTACCGGCAGGTAAGCGAAACACACTTACCCATTTTGAATTTAATACATTTGCGGATAGAAAAACTAAAGCATTTTAACGATACACTAATGTTAAGCTTTGACATACGTAAAGCAACAGAAAGCGCACAAACAAAACTACCACAACGAGGCCAACGAGGCCGTCAAAGTAGGCCATTGCAAATGGAGACGTTTAGCATCGTGTAAATAATGTGGTGTGTGCCACACACACATACCAAACCCCCAAAAGGTTGTGTAGGCTTAAAACGATCGTACACTCTCCTCGTGCTCGTCTGTTGCTCGTAGAATGTCCTGAACCAGATCAAATAGGAAAAACCGAGAAAAAAGAATACGGTTATCACTAGTGATTTATCTTCTCATTCTTGATGTTTGTGGTACTCCGGTACGTGAGAACGGGGAGGAGAAAGGATAAGGCTTTTGAAATTGCTCGAAACCGATCGTGTAATTCTGGTGCTGTGTTTAAAGCGTAAATGTAAGTAGCTTCTACTGAGGGGAACTAACTTAAAGGGAGAGAGAGATA] [+] EMBL BM586053 [CGACCCACGCGTCCGAAGTTTTCTAATTGGAAAACTGGTGGAAAACGAGCGAAAGAGAAGGTTGCAGATAGGGATCAGAACAATTTACCGGCAGGTAAGCGAAACACACTTACCCATTTTGAATTTAATACATTTGCGGATAGAAAAACTAAAGCATTTTAACGATACACTAATGTTAAGCTTTGACATACGTAAAGCAACAGAAAGCGCACAAACAAAACTACCACAACGAGGCCAACGAGGCCGTCAAAGTAGGCCATTGCAAATGGAGACGTTTAGCATCGTGTAAATAATGTGGTGTGTGCCACACACACATACCAAACCCCCAAAAGGTTGTGTAGGCTTAAAACGATCGTACACTCTCCTCGTGCTCGTCTGTTGCTCGTAGAATGTCCTGAACCAGATCAAATAGGAAAAACCGAGAAAAAAGAATACGGTTATCACTAGTGATTTATCTTCTCATTCTTGATGTTTGTGGTACTCCGGTACGTGAGAACGGGGAGGAGAAAGGATAAGGCTTTTGAAATTGCTCGAAACCGATCGTGTAATTCTGGTGCTGTGTTTAAAGCGTAAATGTAAGTAGCTTCTACTGAGGGGAACTAACTTAAAGGGAGAGAGAGATA] consensusID : consensus_532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TTTTTTTTAACGGTTGAATCCATTTCTTTCTCCAATTTATTTAAATTCGTTTTTTGAATGAGAATCACAACTCAATGTCACTTTGTATGTACAGCTATGGTACTGCAGACTTCTTTTAAATACAGAGTTCCTTGTTTCCCCCCTCAATTCCATCTTCCACTCACGTTGAGCGATTGTTCATCGCACAATCAGTTCTTAATACGCCTTCTTTCTCTCTTTCTCTCTAAGCTAGTTCCCCCTCAGTAGAAGCTACTTACATTTACGCTTTAAA] [+] EMBL AGA280154 [TTTTTTTTAACGGTTGAATCCATTTCTTTCTCCAATTTATTTAAATTCGTTTTTTGAATGAGAATCACAACTCAATGTCACTTTGTATGTACAGCTATGGTACTGCAGACTTCTTTTAAATACAGAGTTCCTTGTTTCCCCCCTCAATTCCATCTTCCACTCACGTTGAGCGATTGTTCATCGCACAATCAGTTCTTAATACGCCTTCTTTCTCTCTTTCTCTCTAAGCTAGTTCCCCCTCAGTAGAAGCTACTTACATTTACGCTTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_532#0 CGACCCACGCGTCCGAAGTTTTCTAATTGGAAAACTGGTGGAAAACGAGCGAAAGAGAAG 60 consensus_532#1 ------------------------------------------------------------ consensus_532#0 GTTGCAGATAGGGATCAGAACAATTTACCGGCAGGTAAGCGAAACACACTTACCCATTTT 120 consensus_532#1 ---------------------TTTTTTTTAACGGTTGAATCCATTTCTTTCTCCAATTT- 38 *** * * * * * * * ** **** consensus_532#0 GAATTTAATACATTTGCGGATAGAAAAACTAAAGCATTTTAACGATACACTA-ATGTTAA 179 consensus_532#1 -ATTTAAATTCGTTTTTTGAATGAGAATC----ACAACTCAATGTCACTTTGTATGTACA 93 * ** *** * *** ** ** ** * ** * ** * ** * **** * consensus_532#0 GCTTTGACATACGTAAAGCAACAGAAAGCGCACAAACA-AAACTACCACAACGAGGCCAA 238 consensus_532#1 GCTATGGTA---------CTGCAGACTTCTTTTAAATACAGAGTTCCTTGTTTCCCCCCT 144 *** ** * * **** * *** * * * * ** ** consensus_532#0 CGAGGCCGTCAAAGTAGGCCATTGCAAATGGAGACGTTTAGCATCGTGTAAATAATGTGG 298 consensus_532#1 CAATTCCATCTT------CCACT-CACGTTGAGCGATTGTTCATCGCACAATCAGTTCTT 197 * * ** ** *** * ** * *** ** ***** ** * * consensus_532#0 TGTGTGCCACACACACATACCAAACCCCCAAAAGGTTGTGTAGGCTTAAAACGATCGTAC 358 consensus_532#1 AATACGCCTTCTTTCTCTCTTTCTCTCTAAGCTAGTTCCCCCTCAGTAGAAGCTACTTAC 257 * *** * * * * *** ** ** * *** consensus_532#0 ACTCTCCTCGTGCTCGTCTGTTGCTCGTAGAATGTCCTGAACCAGATCAAATAGGAAAAA 418 consensus_532#1 ATTTACGCTTTAAA---------------------------------------------- 271 * * * * consensus_532#0 CCGAGAAAAAAGAATACGGTTATCACTAGTGATTTATCTTCTCATTCTTGATGTTTGTGG 478 consensus_532#1 ------------------------------------------------------------ consensus_532#0 TACTCCGGTACGTGAGAACGGGGAGGAGAAAGGATAAGGCTTTTGAAATTGCTCGAAACC 538 consensus_532#1 ------------------------------------------------------------ consensus_532#0 GATCGTGTAATTCTGGTGCTGTGTTTAAAGCGTAAATGTAAGTAGCTTCTACTGAGGGGA 598 consensus_532#1 ------------------------------------------------------------ consensus_532#0 ACTAACTTAAAGGGAGAGAGAGATA 623 consensus_532#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||