cluster # 5331

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Anopheles gambiae
cluster # 5331 cluster # 5331 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5331#0 length = 753 sequences # 3

consensus_5331#1 length = 520 sequences # 1

consensusID : consensus_5331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 753
fasta sequence

                              [CGGTAAAGAAAGCGATCGTTCGCACTCTATTATCGAACAGTTAGTCGTCGTTTGTTAGACATGTTTATAGATATATTCTAATGGCGTAATAATCCACATATATTCTAATGTTCGCCTACAGCACGTCCGTTTGATAGACACTACGGGGTTTCGGTTTTGGTGGAACAGTTCGAAGTTGAGTGTGCAACTCCATAAGCAAGTCCGGTTTTTTACCGGCAATCCGTTCGAATCGCTTCATCGCAATAGGTAGCAGAACTTCCGCCATGTAGGTTTTGTTTTTCGCCACAAAGTTCATGTCTGCATTCAGCGAGTTGGGCGGTTTGATGGAATGTTGCGAAAGGAACAGCTCGCGAATGAGCATCTCAGAATCGCGCTGCAGCGAATCGTACTTCGCTAGATAGGCACAGC-TTTCTGTGGTTTGCAGCAGATGGCGACAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACGTGTCGCCCGTCACGTACGCCCGGAAGTCGATGCCCAGCACATCGAATTCTTTAAGCAGCGTGCGGAGACCGGTTTTCGTTTGCAGATTGTATGGTTGCCATGGGTCCTCGGTACGACCGATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTTGGCCTAGCGTGCTACGCAACAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCACGCAGCTTCAAGCAAGGCTCGCGCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGCGCGG]

[+] EMBL BX611733             [CGGTAAAGAAAGCGATCGTTCGCACTCTATTATCGAACAGTTAGTCGTCGTTTGTTAGACATGTTTATAGATATATTCTAATGGCGTAATAATCCACATATATTCTAATGTTCGCCTACAGCACGTCCGTTTGATAGACACTACGGGGTTTCGGTTTTGGTGGAACAGTTCGAAGTTGAGTGTGCAACTCCATAAGCAAGTCCGGTTTTTTACCGGCAATCCGTTCGAATCGCTTCATCGCAATAGGTAGCAGAACTTCCGCCATGTAGGTTTTGTTTTTCGCCACAAAGTTCATGTCTGCATTCAGCGAGTTGGGCGGTTTGATGGAATGTTGCGAAAGGAACAGCTCGCGAATGAGCATCTCAGAATCGCGCTGCAGCGAATCGTACTTCGCTAGATAGGCACAGCTTTTCTGTGGTTTGCAGCAGATGGCGACAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACGTGTCGCCCGTCACGTACGCCCGGAAGTCGATGCCCAGCACATCGAATTCTTTAAGCAGC                                                                                                                                                                                                                               ]
[-] EMBL BX611734             [ GGTAAAGAAAGCGATCGTTCGCACTCTATTATCGAACAGTTAGTCGTCGTTTGTTAGACATGTTTATAGATATATTCTAATGGCGTAATAATCCACATATATTCTAATGTTCGCCTACAGCACGTCCGTTTGATAGACACTACGGGGTTTCGGTTTTGGTGGAACAGTTCGAAGTTGAGTGTGCAACTCCATAAGCAAGTCCGGTTTTTTACCGGCAATCCGTTCGAATCGCTTCATCGCAATAGGTAGCAGAACTTCCGCCATGTAGGTTTTGTTTTTCGCCACAAAGTTCATGTCTGCATTCAGCGAGTTGGGCGGTTTGATGGAATGTTGCGAAAGGAACAGCTCGCGAATGAGCATCTCAGAATCGCGCTGCAGCGAATCGTACTTCGCTAGATAGGCACAGC TTTCTGTGGTTTGCAGCAGATGGCGACAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACGTGTCGCCCGTCACGTACGCCCGGAAGTCGATGCCCAGCACATCGAATTCTTTAAGCAGCG                                                                                                                                                                                                                              ]
[-] EMBL BM604473             [                                                                                                                                                                                                                                                                                                                             GGTTTGATGGAATGTTGCGAAAGGAACAGCTCGCGAATGAGCATCTCAGAATCGCGCTGCAGCGAATCGTACTTCGCTAGATAGGCACAGC TTTCTGTGGTTTGCAGCAGATGGCGACAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACGTGTCGCCCGTCACGTACGCCCGGAAGTCGATGCCCAGCACATCGAATTCTTTTAGCAGCGTGCGGAGACCGGTTTTCGTTTGCAGATTGTATGGTTGCCATGGGTCCTCGGTACGACCGATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTTGGCCTAGCGTGCTACGCAACAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCACGCAGCTTCAAGCAAGGCTCGCGCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGCGCGG]




>consensus_5331#0
CGGTAAAGAAAGCGATCGTTCGCACTCTATTATCGAACAGTTAGTCGTCGTTTGTTAGAC
ATGTTTATAGATATATTCTAATGGCGTAATAATCCACATATATTCTAATGTTCGCCTACA
GCACGTCCGTTTGATAGACACTACGGGGTTTCGGTTTTGGTGGAACAGTTCGAAGTTGAG
TGTGCAACTCCATAAGCAAGTCCGGTTTTTTACCGGCAATCCGTTCGAATCGCTTCATCG
CAATAGGTAGCAGAACTTCCGCCATGTAGGTTTTGTTTTTCGCCACAAAGTTCATGTCTG
CATTCAGCGAGTTGGGCGGTTTGATGGAATGTTGCGAAAGGAACAGCTCGCGAATGAGCA
TCTCAGAATCGCGCTGCAGCGAATCGTACTTCGCTAGATAGGCACAGCTTTCTGTGGTTT
GCAGCAGATGGCGACAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACGTGTCGCCCG
TCACGTACGCCCGGAAGTCGATGCCCAGCACATCGAATTCTTTAAGCAGCGTGCGGAGAC
CGGTTTTCGTTTGCAGATTGTATGGTTGCCATGGGTCCTCGGTACGACCGATCGAATCGA
CCAGTCGGTAACGAGCTTCATCTAGCAGTTGGCCTAGCGTGCTACGCAACAGACCCTCCA
TGTGGTAGGACAGGTCGAGTCCTATTTCACGCAGCTTCAAGCAAGGCTCGCGCACACCTT
CTACCACCTTCGCCACCATCTCGAGCTGCGCGG

consensusID : consensus_5331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [TGTTGATGGAATGTTTGGCGAAAGGAACAGCTCGCGAATGAGCATGCTCAGAATCGCGCCATGGCAGGCGGAATCGGTACTTCAGCTAGAATAGGCACAGCTGTTCATGTGGTTTCGCAAGCAAGATGGCGACAAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACAGTGTCGCCCGTCAACAGTACGGCCCGGAAGTCGATGCACCAGCACAATCGAATTCTTTTAGCAGCAGTGCAGGAGACCAGGTTCTTCAGTTTGCAAGATTGTATGTTGCCATGGGTCCTCAGGTACGACCGATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTTGGCCTAGCGTGCTACGCAACAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCACGCAGCTTCAAGCAAGGCTCGCAGCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGCGTGTCCTTCGTAAGATAGTGCTTAATGAGCTGTGAGGCAAAGACCTCGGGCGATTCTGG]

[-] EMBL AL931177             [TGTTGATGGAATGTTTGGCGAAAGGAACAGCTCGCGAATGAGCATGCTCAGAATCGCGCCATGGCAGGCGGAATCGGTACTTCAGCTAGAATAGGCACAGCTGTTCATGTGGTTTCGCAAGCAAGATGGCGACAAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACAGTGTCGCCCGTCAACAGTACGGCCCGGAAGTCGATGCACCAGCACAATCGAATTCTTTTAGCAGCAGTGCAGGAGACCAGGTTCTTCAGTTTGCAAGATTGTATGTTGCCATGGGTCCTCAGGTACGACCGATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTTGGCCTAGCGTGCTACGCAACAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCACGCAGCTTCAAGCAAGGCTCGCAGCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGCGTGTCCTTCGTAAGATAGTGCTTAATGAGCTGTGAGGCAAAGACCTCGGGCGATTCTGG]




>consensus_5331#1
TGTTGATGGAATGTTTGGCGAAAGGAACAGCTCGCGAATGAGCATGCTCAGAATCGCGCC
ATGGCAGGCGGAATCGGTACTTCAGCTAGAATAGGCACAGCTGTTCATGTGGTTTCGCAA
GCAAGATGGCGACAAGAAACTAACCGTCGCCTGTGTTAGATTAATCCACAGTGTCGCCCG
TCAACAGTACGGCCCGGAAGTCGATGCACCAGCACAATCGAATTCTTTTAGCAGCAGTGC
AGGAGACCAGGTTCTTCAGTTTGCAAGATTGTATGTTGCCATGGGTCCTCAGGTACGACC
GATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTTGGCCTAGCGTGCTACGCAA
CAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCACGCAGCTTCAAGCAAGGCTC
GCAGCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGCGTGTCCTTCGTAAGATAGT
GCTTAATGAGCTGTGAGGCAAAGACCTCGGGCGATTCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5331#0      CGGTAAAGAAAGCGATCGTTCGCACTCTATTATCGAACAGTTAGTCGTCGTTTGTTAGAC 60
consensus_5331#1      ------------------------------------------------------------
                                                                                  

consensus_5331#0      ATGTTTATAGATATATTCTAATGGCGTAATAATCCACATATATTCTAATGTTCGCCTACA 120
consensus_5331#1      ------------------------------------------------------------
                                                                                  

consensus_5331#0      GCACGTCCGTTTGATAGACACTACGGGGTTTCGGTTTTGGTGGAACAGTTCGAAGTTGAG 180
consensus_5331#1      ------------------------------------------------------------
                                                                                  

consensus_5331#0      TGTGCAACTCCATAAGCAAGTCCGGTTTTTTACCGGCAATCCGTTCGAATCGCTTCATCG 240
consensus_5331#1      ------------------------------------------------------------
                                                                                  

consensus_5331#0      CAATAGGTAGCAGAACTTCCGCCATGTAGGTTTTGTTTTTCGCCACAAAGTTCATGTCTG 300
consensus_5331#1      ------------------------------------------------------------
                                                                                  

consensus_5331#0      CATTCAGCGAGTTGGGCGGTTTGATGGAATGTT--GCGAAAGGAACAGCTCGCGAATGAG 358
consensus_5331#1      ------------------TGTTGATGGAATGTTTGGCGAAAGGAACAGCTCGCGAATGAG 42
                                          *************  *************************

consensus_5331#0      CAT-CTCAGAATCGCGCTGCAGC-----GAATCG-TACTTC-GCTAGA-TAGGCACAGCT 409
consensus_5331#1      CATGCTCAGAATCGCGCCATGGCAGGCGGAATCGGTACTTCAGCTAGAATAGGCACAGCT 102
                      *** *************    **     ****** ****** ****** ***********

consensus_5331#0      TTC--TGTGGTTT-GCAGC--AGATGGCGACA-GAAACTAACCGTCGCCTGTGTTAGATT 463
consensus_5331#1      GTTCATGTGGTTTCGCAAGCAAGATGGCGACAAGAAACTAACCGTCGCCTGTGTTAGATT 162
                       *   ******** ***    *********** ***************************

consensus_5331#0      AATCCAC-GTGTCGCCCGTCAC--GTACG-CCCGGAAGTCGATGC-CCAGCACA-TCGAA 517
consensus_5331#1      AATCCACAGTGTCGCCCGTCAACAGTACGGCCCGGAAGTCGATGCACCAGCACAATCGAA 222
                      ******* *************   ***** *************** ******** *****

consensus_5331#0      TTCTTTAAGCAGC-GTGC-GGAGACCGGTTTTC---GTTTGCA-GATTGTATGGTTGCCA 571
consensus_5331#1      TTCTTTTAGCAGCAGTGCAGGAGACCAGGTTCTTCAGTTTGCAAGATTGTATG-TTGCCA 281
                      ****** ****** **** ******* * **     ******* ********* ******

consensus_5331#0      TGGGTCCTC-GGTACGACCGATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTT 630
consensus_5331#1      TGGGTCCTCAGGTACGACCGATCGAATCGACCAGTCGGTAACGAGCTTCATCTAGCAGTT 341
                      ********* **************************************************

consensus_5331#0      GGCCTAGCGTGCTACGCAACAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCAC 690
consensus_5331#1      GGCCTAGCGTGCTACGCAACAGACCCTCCATGTGGTAGGACAGGTCGAGTCCTATTTCAC 401
                      ************************************************************

consensus_5331#0      GCAGCTTCAAGCAAGGCTCGC-GCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGC 749
consensus_5331#1      GCAGCTTCAAGCAAGGCTCGCAGCACACCTTCTACCACCTTCGCCACCATCTCGAGCTGC 461
                      ********************* **************************************

consensus_5331#0      GCGG------------------------------------------------------- 753
consensus_5331#1      GTGTCCTTCGTAAGATAGTGCTTAATGAGCTGTGAGGCAAAGACCTCGGGCGATTCTGG 520
                      * *