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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 941 fasta sequence
[AATGTTTGTGTAAGCAGCTAGGCCATAGGTTAGCGCACGATGTAAAATGAACACTTAGATAAGGAAAGGTAACTAGTACACTAAATTCAATGTTTGGGACGTAAGTAGAATGATAGGATTTTTTAAATGTAAACTGAATTACCAATTACACTCTCCCAATAAGCAAACAAGATCAGTTCTGGCTGCTTGGACTTACTGGTGACAAGCAGTAAACGTACAACAGGTGCAAGCGTGTGCTGGAAACAACACACAAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCACACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAAAGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCT-AAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTTAGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCAGCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAAGCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTACTACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGGGAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACGTAAATGTTGCACAGTAGTGTGTTGGGGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGACGT]
[+] EMBL BX611365 [AATGTTTGTGTAAGCAGCTAGGCCATAGGTTAGCGCACGATGTAAAATGAACACTTAGATAAGGAAAGGTAACTAGTACACTAAATTCAATGTTTGGGACGTAAGTAGAATGATAGGATTTTTTAAATGTAAACTGAATTACCAATTACACTCTCCCAATAAGCAAACAAGATCAGTTCTGGCTGCTTGGACTTACTGGTGACAAGCAGTAAACGTACAACAGGTGCAAGCGTGTGCTGGAAACAACACACAAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCACACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAAAGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCT AAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGC ]
[+] EMBL BX612707 [ AAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCACACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAAAGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCT AAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTTAGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCAGCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAAGCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTACTACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGGGAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACGTAAATGTTGCACAGTAGTGTGTTGGGGACAATGAAATCGATTACAG ]
[+] EMBL AL931208 [ tcgcccGAGGANAAATTGTACTAGCTGT AGCTAAAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTTAGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCAGCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAAGCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTACTACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGGGAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACGTAAATGTTGCACAGTAGTGTGTTGGGGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGACGT]
consensusID : consensus_5332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CCGGCGATGCGCGTGGGAGACGCCGGAGGTGACAACATGACAGCCAAAGTGTGCCAGCAGCAAGAGCAGAAGCAAGAAATAATTATGATCCAACCTGGGAATGGGATTAGTTTATCGAAGCGAAGCAAAGAAGGGAACGGCACTCGCTAGACGCAGGGCGGTATAAAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTATTACTACTACTACTCCTACTACTACAACTACTACTACTGTTAGAACTGGTGTGATTTTGTCAGTCGCATAAGTAGGGAAAGCGCCAGCGAGAGCCGTTGAAAGCCTACGAAAAAAGCAAATGATGCAAACAGTAGTGTGTTGGAGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGGCGTAGAGTTGTGTGTAAGCCGTGGCAGGAGGAAAATTATTTTTATTTACTGTTCTGTCTTGTGGCACGTAAGTTGCGCGGAAGCAATTGATAGATCTTCAACTAAATAAAAGAATGAATCCATTTTTCAATGT]
[+] EMBL BM588938 [CCGGCGATGCGCGTGGGAGACGCCGGAGGTGACAACATGACAGCCAAAGTGTGCCAGCAGCAAGAGCAGAAGCAAGAAATAATTATGATCCAACCTGGGAATGGGATTAGTTTATCGAAGCGAAGCAAAGAAGGGAACGGCACTCGCTAGACGCAGGGCGGTATAAAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTATTACTACTACTACTCCTACTACTACAACTACTACTACTGTTAGAACTGGTGTGATTTTGTCAGTCGCATAAGTAGGGAAAGCGCCAGCGAGAGCCGTTGAAAGCCTACGAAAAAAGCAAATGATGCAAACAGTAGTGTGTTGGAGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGGCGTAGAGTTGTGTGTAAGCCGTGGCAGGAGGAAAATTATTTTTATTTACTGTTCTGTCTTGTGGCACGTAAGTTGCGCGGAAGCAATTGATAGATCTTCAACTAAATAAAAGAATGAATCCATTTTTCAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5332#0 AATGTTTGTGTAAGCAGCTAGGCCATAGGTTAGCGCACGATGTAAAATGAACACTTAGAT 60
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 AAGGAAAGGTAACTAGTACACTAAATTCAATGTTTGGGACGTAAGTAGAATGATAGGATT 120
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 TTTTAAATGTAAACTGAATTACCAATTACACTCTCCCAATAAGCAAACAAGATCAGTTCT 180
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 GGCTGCTTGGACTTACTGGTGACAAGCAGTAAACGTACAACAGGTGCAAGCGTGTGCTGG 240
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 AAACAACACACAAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCA 300
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 CACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAA 360
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 AGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCTAAATTATG 420
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 TCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTC 480
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 CCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTT 540
consensus_5332#1 ------------------------------------------------------------
consensus_5332#0 AGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCA 600
consensus_5332#1 -CCGGCGATGCGCGTGGGAGACGCCGGAGGTGACAACATGACAGCCAAAGTGTGCCAGCA 59
********************** *** *** *************************
consensus_5332#0 GCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAA 660
consensus_5332#1 GCAAGAGCAGAAGCAAGAAATAATTATGATCCAACCTGGGAATGGGATTAGTTTATCGAA 119
*** ***************** ******************************* *****
consensus_5332#0 GCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAG 720
consensus_5332#1 GCGAAGCAAAGAAGGGAACGGCACTCGCTAGACGCAGGGCGGTATAAAGTGTCACAAGAG 179
********* *** ******************************** *************
consensus_5332#0 TCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTAC 780
consensus_5332#1 TCTTATTCGTAAGAGGTACAAAACTACTACTATTATTATTACTACTACTACTCCTACTAC 239
************************************** *********************
consensus_5332#0 TACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGG 840
consensus_5332#1 TACAAC------TACTACTACTGTTAGAACTGGTGTGATTTTGTCAGTCGCATAAGTAGG 293
****** *************************** ** *****************
consensus_5332#0 GAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACG-------TAAATGTTGCA--CAGTAGT 891
consensus_5332#1 GAAAGCGCCAGCGAGAGCCGTTGAAAGCCTACGAAAAAAGCAAATGATGCAAACAGTAGT 353
************* *** *************** ***** **** *******
consensus_5332#0 GTGTTGGGGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGACGT---------- 941
consensus_5332#1 GTGTTGGAGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGGCGTAGAGTTGTGT 413
******* ************************************** ***
consensus_5332#0 ------------------------------------------------------------
consensus_5332#1 GTAAGCCGTGGCAGGAGGAAAATTATTTTTATTTACTGTTCTGTCTTGTGGCACGTAAGT 473
consensus_5332#0 ------------------------------------------------------------
consensus_5332#1 TGCGCGGAAGCAATTGATAGATCTTCAACTAAATAAAAGAATGAATCCATTTTTCAATGT 533
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||