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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1037 fasta sequence
[AGAATCGCCCGAGNTGAATCCTGATCGGTCATAGGGCCTTTGGACGACCCTGAGGCATCGACATCTACAATGCATTCTCGAGATGCAGGGCGGCGTCGATGTTCCTATACTTCAAAAATTGCCTANAAGCTCAGCTCAGAATCATCGGAGCAACTCTAGACGAACTAGGGATACTTCCTTTCAAACAATGCGTCTCGAGAATATATCCCAACACTATAACCTTTAAACAAATTCTGAGTCCCAGAGGACTTTGAGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCGGTCCAGGACCTCTAGACGACAGCGGGCCCAAAGCAATTTCTGACAATTCCTTGTCAGGGGATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCTAGAAATGGAGTTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTGTACATGGAGTACTANACCTCAAAGACCACCAGGA-CCTAA-CGTCCGGAAAACTTTGGGCGTGAATCGTACTTTCTGNACAGCGTATATTGCGTATACGGCTTGCAGAATTTTTATTTAAAAACAAACACGA-CACTCCCAAAGTTCGCGTTACTGGGTTCTGTTTATATCAATATGTATATATTTC-TTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTTAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACAAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTCACCCCGCCCCGGGTCTATTTATAGAGAACGAATAGAACGAAAAAAGCACACACACACACAGCATACACACAATCTCCAG]
[+] EMBL AL931225 [AGAATCGCCCGAGNTGAATCCTGATCGGTCATAGGGCCTTTGGACGACCCTGAGGCATCGACATCTACAATGCATTCTCGAGATGCAGGGCGGCGTCGATGTTCCTATACTTCAAAAATTGCCTANAAGCTCAGCTCAGAATCATCGGAGCAACTCTAGACGAACTAGGGATACTTCCTTTCAAACAATGCGTCTCGAGAATATATCCCAACACTATAACCTTTAAACAAATTCTGAGTCCCAGAGGACTTTGAGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCGGTCCAGGACCTCTAGACGACAGCGGGCCCAAAGCAATTTCTGACAATTCCTTGTCAGGGGATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCTAGAAATGGAGTTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTGTACATGGAGTACTANACCTCAAAGACCACCAGGA CCTAA CGTCCGGAAAACTTTGGGCGTGAATCGTACTTTCTGNACAGCGTATATTGCGTATACGGCTTGCAGAATTTTTATTTAAAAACAAACACGA CACTCCCAAAGTTCGCGTTACTGGGTTCTGGGTATATCCACATGTATATATTTCTTTTACAGGATCTC ]
[+] EMBL BX609613 [ AGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCGGTCCAGGACCTCTAGACGACAGCGGG CCAAAGCAATTTCTGACAATTCCTTGTCA GGGATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCTAGAAATGGA TTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTGTACATGGAGTACTACACCTCAAAGACCACCAGGACCCTAACCGTCCGGAAAACTTTGGGCGTGAATCGTACTTTCTGTACAGC TATATTGC TATACGGCTTGCAGAATTTTTATTTAAAAA AAACACGACCACT CCAAAGTTCGC TTACT GCTTCTGTTTATATCAATATGTATATATTTC TTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTTAGTAATGTTTTTTTTTTTTTA ]
[-] EMBL BX610941 [ TGTTTATATCAATATGTATATATTTC TTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACAAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTCACCCCGCCCCGGGTCTATTTATAGAGAACGAATAGAACGAAAAAAGCACACACACACACAGCATACACACAATCTCCAG]
consensusID : consensus_5333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[TTCTGTTTATATCAATATGTATATATTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACGAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTTTGTTTGTTTGTTTGTTTGTGTTTTGTCCCAATCCTTCGTTCTCCACTTCCATTTGTCAATTCATGTCACTCGCTCTCTCTCGCTTTCTGTCTCTATTTTGTTTTTTTTTGTTCTTCCCTTTCTCGCTCTTCGCGAATGTGTGTCTGTGTGTGTTTGTGTGTTTTGTAACAATTGATTGATTTTGCTGTTGCAGTTGTTATGTTGTTTTTTTTTTACGTTTATATTCGTCGATTTTAATTCGATTTATTACAT]
[-] EMBL BX608226 [TTCTGTTTATATCAATATGTATATATTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACGAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTTTGTTTGTTTGTTTGTTTGTGTTTTGTCCCAATCCTTCGTTCTCCACTTCCATTTGTCAATTCATGTCACTCGCTCTCTCTCGCTTTCTGTCTCTATTTTGTTTTTTTTTGTTCTTCCCTTTCTCGCTCTTCGCGAATGTGTGTCTGTGTGTGTTTGTGTGTTTTGTAACAATTGATTGATTTTGCTGTTGCAGTTGTTATGTTGTTTTTTTTTTACGTTTATATTCGTCGATTTTAATTCGATTTATTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5333#0 AGAATCGCCCGAGNTGAATCCTGATCGGTCATAGGGCCTTTGGACGACCCTGAGGCATCG 60
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 ACATCTACAATGCATTCTCGAGATGCAGGGCGGCGTCGATGTTCCTATACTTCAAAAATT 120
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 GCCTANAAGCTCAGCTCAGAATCATCGGAGCAACTCTAGACGAACTAGGGATACTTCCTT 180
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 TCAAACAATGCGTCTCGAGAATATATCCCAACACTATAACCTTTAAACAAATTCTGAGTC 240
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 CCAGAGGACTTTGAGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCG 300
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 GTCCAGGACCTCTAGACGACAGCGGGCCCAAAGCAATTTCTGACAATTCCTTGTCAGGGG 360
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 ATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCT 420
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 AGAAATGGAGTTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTG 480
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 TACATGGAGTACTANACCTCAAAGACCACCAGGACCTAACGTCCGGAAAACTTTGGGCGT 540
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 GAATCGTACTTTCTGNACAGCGTATATTGCGTATACGGCTTGCAGAATTTTTATTTAAAA 600
consensus_5333#1 ------------------------------------------------------------
consensus_5333#0 ACAAACACGACACTCCCAAAGTTCGCGTTACTGGGTTCTGTTTATATCAATATGTATATA 660
consensus_5333#1 -----------------------------------TTCTGTTTATATCAATATGTATATA 25
*************************
consensus_5333#0 TTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAA 720
consensus_5333#1 TTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAA 85
************************************************************
consensus_5333#0 ACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAG 780
consensus_5333#1 ACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAG 145
************************************************************
consensus_5333#0 AATACACATTTTAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTT 840
consensus_5333#1 AATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTT 205
*********** ************************************************
consensus_5333#0 GATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACAA 900
consensus_5333#1 GATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACGA 265
********************************************************** *
consensus_5333#0 GAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTCAC 960
consensus_5333#1 GAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTTTG 325
*********************************************************
consensus_5333#0 CCCGCCC---CGGGTCTATTTATAGAGAACGAATAGAACGAAAAAAGCACACACACACAC 1017
consensus_5333#1 TTTGTTTGTTTGTTTGTGTTTTGTCCCAATCCTTCGTTCTCCACTTCCATTTGTCAATTC 385
* * * * *** ** * * * * ** * *
consensus_5333#0 AGCATACACACAATCTCCAG---------------------------------------- 1037
consensus_5333#1 ATGTCACTCGCTCTCTCTCGCTTTCTGTCTCTATTTTGTTTTTTTTTGTTCTTCCCTTTC 445
* ** * * **** *
consensus_5333#0 ------------------------------------------------------------
consensus_5333#1 TCGCTCTTCGCGAATGTGTGTCTGTGTGTGTTTGTGTGTTTTGTAACAATTGATTGATTT 505
consensus_5333#0 ------------------------------------------------------------
consensus_5333#1 TGCTGTTGCAGTTGTTATGTTGTTTTTTTTTTACGTTTATATTCGTCGATTTTAATTCGA 565
consensus_5333#0 ----------
consensus_5333#1 TTTATTACAT 575
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||