These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1149 fasta sequence [TATTCGAAACAACTAGCCAAGCTCTACTTTTACATACATTGACACACAACTATATACACAGTAGCAATATGTGCCCACGGTGGCAGTAGAACACAGCAGCAGCGAAAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAACAAACACACGCACACACATAAAACAAGGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCAAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCCGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGTTAAGGAACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAACCTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAAAACAATTAGCGTATTTAGAAACATTTAGTAAACGTTACGTGTTAAGTAATAATAGAGCGATAGAAGGAAGAATAGAAGAAGGAGAGTTGGATAAGGAGGTGGTAGAATTAGTGAAGTGATTTGAAAAAGAAAATGAAATTTCTCCTCCCCGCTACAGCATTGTAACAACAACAAGCGGCAAAAAACAGGAGAAAGCCTGGCAAACACGATTTTCTACTAAGCGGAATATTTATGCGTAAACAAGAAAAGGCTACAAGCATATAGAACATATACATATATACATACAGGCACACTTAAAACTTACAGTACATATATACAACAACTATGTATGGATATACACAAGACAGAGGACAGCAGCGGGAGACGACAAAAAAGGCGCATCTAGCTCTTGAGTAGTTTGCAGCATTTAAAATAGCGATTAAAGCAAGCAGAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACAT] [+] EMBL BX613630 [TATTCGAAACAACTAGCCAAGCTCTACTTTTACATACATTGACACACAACTATATACACAGTAGCAATATGTGCCCACGGTGGCAGTAGAACACAGCAGCAGCGAAAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAACAAACACACGCACACACATAAAACAAGGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCAAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCCGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGTTAAGGAACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAACCTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAAAACAATTAGCGTATTTAGAAACATTTAGTAAACGTTACGTGTTAAGTAATAATAGAGCGAT ] [+] EMBL BM630887 [ CCGCTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGGTAAGGAACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAAAACAATTAGCGTATTTAGAAACATTTAGTAAACGTTACGTGTTAAGTAATCATAGAGCGATAGAAGGAAGAATAGAAGAAGGAGAGTTGGATAAGGAGGTGGTAGAATTAGTGAAGTGATTTGAAAAAGAAAATGAAATTTCTCCTCCCCGCTACAGCATTGTAACAACAACAAGCGGCAAAAAACAGGAGAAAGCCTGGCAAACACGATTTTCTACTAAGCGGAATATTTATGCGTAAACAAGAAAAGGCTACAAGCATATAGAACATATACATATATACATACAGGCACACTTAAAACTTACAGTACATATATACAACAACTATGTATGGATATACACAAGACAGAGGACAGCAGCGGGAGACGACAAAAAAGGCGCATCTAGCTCTTGAGTAGTTTGCAGCATTTAAAATAGCGATTAAAGCAAGCAGAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACAT] consensusID : consensus_5338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [CAGGCAAGAATCGCCCCGAGGTAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACAAAAAAGCAAACACACGTACACACATAAAACAAAGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCTAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCTGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTTGGTAAGGAACGTGAGTGAACCAGTCACGTAAAACAAAAAATGGANAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTNNCAGTAATGGTAAGCAAAACAATTAGCGTCATCAGAAACATTNAGTAAACGTTNACGAGTTAAGTACATCNATAGAGCGCATAGCACAGGACCGACATCAGANAGAAGCGCANGCAGTNCGGCCATCAACGGCAAGCGTNGGTNACGCAATTCAGGTCGNACAGTCGGAANTCTACGCAAACACCACGCAANCANTCGCACACATTTTCTCCCTACCCCCGCTACCAGCNATTCG] [+] EMBL AL931332 [CAGGCAAGAATCGCCCCGAGGTAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACAAAAAAGCAAACACACGTACACACATAAAACAAAGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCTAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCTGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTTGGTAAGGAACGTGAGTGAACCAGTCACGTAAAACAAAAAATGGANAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTNNCAGTAATGGTAAGCAAAACAATTAGCGTCATCAGAAACATTNAGTAAACGTTNACGAGTTAAGTACATCNATAGAGCGCATAGCACAGGACCGACATCAGANAGAAGCGCANGCAGTNCGGCCATCAACGGCAAGCGTNGGTNACGCAATTCAGGTCGNACAGTCGGAANTCTACGCAAACACCACGCAANCANTCGCACACATTTTCTCCCTACCCCCGCTACCAGCNATTCG] consensusID : consensus_5338#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CCGAAGGGACGCTGCAGTGGTGCCGGTGATCACACGCACACTCACACACACACACACGCCCACCCATACACCTGATGCCTTCTTTAAACGATGATGCTTCTACCGATTTGCCAACTTTTTGAAGACAACAGCTCTCCCGGAGAGGGTGGGGAAGGGCACTGCAAAACTGCATACAACTTAGTAAAACTCACAGTCACTGGTAGTGCATCTGGTAGTGTGAAGGATGCCCCAGGCGGTAATAGTAGAGCTTGGCTAGTTGTTTCGAATACAAGAACACACTCACAAACGTACACAAAGCATCACTCACACATACATAGACACACAACTATATACACAATAGCAATATGTGCCCACGGTGGCAGTAGAACGCAGCAGCAGCGACAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACATTGTAAGCAAACCAT] [+] EMBL BM638084 [CCGAAGGGACGCTGCAGTGGTGCCGGTGATCACACGCACACTCACACACACACACACGCCCACCCATACACCTGATGCCTTCTTTAAACGATGATGCTTCTACCGATTTGCCAACTTTTTGAAGACAACAGCTCTCCCGGAGAGGGTGGGGAAGGGCACTGCAAAACTGCATACAACTTAGTAAAACTCACAGTCACTGGTAGTGCATCTGGTAGTGTGAAGGATGCCCCAGGCGGTAATAGTAGAGCTTGGCTAGTTGTTTCGAATACAAGAACACACTCACAAACGTACACAAAGCATCACTCACACATACATAGACACACAACTATATACACAATAGCAATATGTGCCCACGGTGGCAGTAGAACGCAGCAGCAGCGACAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACATTGTAAGCAAACCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5338#0 TATTCGAAACAACTAGCCAAGCTCTACTTTTACATACATTGACACACAACTATATACACA 60 consensus_5338#1 ------------------------------------------------------------ consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 GTAGCAATATGTGCCCACGGTGGCAGTAGAACACAGCAGCAGCGAAAGGATAATATTATA 120 consensus_5338#1 -----------------------------CAGGCAAGAATCGCCCCGAGGTAATCTTC-- 29 consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 CAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAACAA 180 consensus_5338#1 -------GTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAAC---AAAAAAGCAA 79 consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 ACACACGCACACACATAAAACAAGGCAACAAATTGCAAGAAACAAGTAATGAATAATCGA 240 consensus_5338#1 ACACACGTACACACATAAAACAAAGCAACAAATTGCAAGAAACAAGTAATGAATAATCGA 139 consensus_5338#2 --------------------------------------------------------CCGA 4 *** consensus_5338#0 ATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATA------AATT 294 consensus_5338#1 ATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATATATATAAATT 199 consensus_5338#2 AGGGACGCTGCAGTGGTGCCGGTGATCACACGCACACTCACACACACACA---------- 54 * * * * * * * *** * * * * * * consensus_5338#0 ATACAGCAATGTAATCATCTCATGAATCATCAAAAAAATCATCAAACGCAGTAATTAAAC 354 consensus_5338#1 ATACAGCAATGTAATCATCTCATGAATCATCAAAAAA-TCATCAAACGCAGTAATTAAAC 258 consensus_5338#2 -CACGCCCACCCATACACCTGATGCCTTCTTTAAACGATGAT-GCTTCTACCGATTTG-C 111 ** * * * ** ** *** * * *** * ** * *** * consensus_5338#0 TAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCAAAGGGGCGCCCCAGCTCCTTGGC 414 consensus_5338#1 TAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCTAAGGGGCGCCCCAGCTCCTTGGC 318 consensus_5338#2 CAACTTTTTGAAGACAACAGCTCTCCCGGAGAGGGTGGGGAAGGGCACTGCAAAACTGCA 171 * * * * *** * * ** ** * * * * ** * ** consensus_5338#0 GGAGACTAAGATCGACTCCGCGCCTCCTGGCCGGCGGGAATGGGGCGCCCAATTTTACAC 474 consensus_5338#1 GGAGACTAAGATCGACTCCGCGCCTCCTGGCTGGCGGGAATGGGGCGCCCAATTTTACAC 378 consensus_5338#2 TACAACTTAG-TAAAACTCACAGTCACTGG-TAGTGCATCTGGTAGTGTGAAGGATGCCC 229 *** ** * * * * **** * * *** ** * * * consensus_5338#0 CACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGTTAAGGA 534 consensus_5338#1 CACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTTGGTAAGGA 438 consensus_5338#2 CAGGCGGT----AATAGTAGAGCTTGGCTAGTTGTTTCGAATACAAGAACACACTCACAA 285 ** ** ** * ** * * * * * *** * * * * * consensus_5338#0 ACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAA-GGAAGCAAAACCCC--TGGCAA 591 consensus_5338#1 ACGTGAGTGAACCAGTCACGTAAAACAAAAAATGGANAGGAAGCAAAACCCC--TGGCAA 496 consensus_5338#2 ACGTACACAAAGCA-TCAC-TCACACATACATAGACACACAACTATATACACAATAGCAA 343 **** ** ** **** * * *** * * * ** * * * * * **** consensus_5338#0 ACAGCAAAACAAAAAACCGAAACCTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAA 651 consensus_5338#1 ACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTNNCAGTAATGGTAAGCAA 556 consensus_5338#2 TATGTGCCCACGGTGGCAGTAGAACGCAGC-AGCAGCGACAGGATAATATTATACAGCAA 402 * * * * * * * ** * *** * ** * ***** consensus_5338#0 AACAATTAGCGTATTTAGAAA-CATTTAGTAAACGTTA-CGTGTTAAGTAA--TAATAGA 707 consensus_5338#1 AACAATTAGCGTCATCAGAAA-CATTNAGTAAACGTTNACGAGTTAAGTACATCNATAGA 615 consensus_5338#2 AGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAA----AACAAA 458 * * * * * * * * * * ** *** **** * * * * consensus_5338#0 GCGATAGAAGGAAGAATAGAAGAAGGAGAGTTGGATAAGGAGGTGGTAGAATTAGTGAAG 767 consensus_5338#1 GCG-CATAGCACAGGACCGACATCAGANAGAAGCGCANGCAGTNCG-GCCATCAACGGCA 673 consensus_5338#2 ACAAAACACAGAAAGACACACA-CACACAAAGAAATGTTTAATT---GTTTCCTATAAAA 514 * * * * * * * * * consensus_5338#0 TGATTTGAAAAAGAAAATGAAATTTCTCCTCCCCGCTACAGCATTGTAACAACAACAAGC 827 consensus_5338#1 AGCGTNGGTNACGCAATTCAGGT-----CGNACAGTCGGAANTCTACGCAAACACCACGC 728 consensus_5338#2 CACATTG--TAAGCAAACCAT--------------------------------------- 533 * * * * ** * consensus_5338#0 GGCAAAAAACAGGAGAAAGCCTGGCAAACACGATTTTCTACTAAGCGGAATATTTATGCG 887 consensus_5338#1 AANCANTCGCAC-ACATTTTCTCCCTACCCCCGCTACCAGCNATTCG------------- 774 consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 TAAACAAGAAAAGGCTACAAGCATATAGAACATATACATATATACATACAGGCACACTTA 947 consensus_5338#1 ------------------------------------------------------------ consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 AAACTTACAGTACATATATACAACAACTATGTATGGATATACACAAGACAGAGGACAGCA 1007 consensus_5338#1 ------------------------------------------------------------ consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 GCGGGAGACGACAAAAAAGGCGCATCTAGCTCTTGAGTAGTTTGCAGCATTTAAAATAGC 1067 consensus_5338#1 ------------------------------------------------------------ consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 GATTAAAGCAAGCAGAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTT 1127 consensus_5338#1 ------------------------------------------------------------ consensus_5338#2 ------------------------------------------------------------ consensus_5338#0 AATTGTTTCCTATAAAACACAT 1149 consensus_5338#1 ---------------------- consensus_5338#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||