These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [GCAGATNGCCGAGGNNATGTTGTGCGAGACATCACTGCTGTCGCTGATCTCGGGTGGACAGCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTGCCAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCAACGTTACTGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGGCACAGTGGTCAAGATCCCGCGTAGAAGTTGTCTAACCACGTGGTTTCCCTCCGGCGGTCAGCCGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGATCACGGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACTGACCAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCCTCCTGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCGGTTATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATCAGC] [+] EMBL AL931475 [GCAGATNGCCGAGGNNATGTTGTGCGAGACATCACTGCTGTCGCTGATCTCGGGTGGACAGCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTGCCAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCAACGTTACTGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGGCACAGTGGTCAAGATCCCGCGTAGAAGTTGTCTAACCACGTGGTTTCCCTCCGGCGGTCAGCCGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGATCACGGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACTGACCAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCCTCCTGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCGGTTATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATCAGC] consensusID : consensus_5343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 671 fasta sequence [CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACAGATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCGACCATCAGAGCTTTCACATCGCCAATCTCACGTACCCGTTGCGCGCTGGCACAGTGGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAATCGAAGTCAACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGATCAGGAATTTCCGTGATCCATGGACGGGATCGGTAGTGCCGGGCGCGAGTACCACGACCCAGCCGGAAGTACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCCTCCTGCCAGGCGATTCGTACCGGGG] [+] EMBL BM611908 [CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACAGATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCGACCATCAGAGCTTTCACATCGCCAATCTCACGTACCCGTTGCGCGCTGGCACAGTGGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAATCGAAGTCAACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGATCAGGAATTTCCGTGATCCATGGACGGGATCGGTAGTGCCGGGCGCGAGTACCACGACCCAGCCGGAAGTACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCCTCCTGCCAGGCGATTCGTACCGGGG] [+] EMBL BX604446 [ ATCAGACAGGAGCTAACAGCACACAGAAGAAGCAAAT AACAGATCAGTCAGTCAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCGTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTACCGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTACGATCCGTTACGTCCAGATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAGCACCATCGACCATCAGAGCTTTCACATCGCCAATCTAACGTACCCGTTGCGCGCTGGCACAGTGGTCAAGATCCCGCTAGAAGTGTCCTACACCACCGGTTCCCCTCCGGCGGTCAGCCGAATCGAAGTCAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTG ] [+] EMBL BX606522 [ AGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACAGATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGACAGCCGCTGGCGCTCTCGCCACCTACATACGCGTGGGGCAAAGTGCAGAAGTGCGCCTGCCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5343#0 ---------------------------------------------------------GCA 3 consensus_5343#1 CCGTGATCTTCGATCAGACAGGAGCTAGGAGCACACAGAAGAAGCAAATAAAAAAAAACA 60 ** consensus_5343#0 GATNGCCGAG---GNNATGTTGTGCGAGACATCACTGCTGTCGCTGATC-TCGGGTGGAC 59 consensus_5343#1 GATCAGTCAGTGAAAGATGTTGCGCGAGACATCACTGCTGTCGCTGATCCTCGGGTGGAC 120 *** ** ****** ************************** ********** consensus_5343#0 AGCCGCTGGCGCTCTCGGCCACCTACATACGGCGTNGGGCAAAGTGCAGAAGTGCGCCTG 119 consensus_5343#1 AGCCGCTGGCGCTCTCG-CCACCTACATACG-CGTGGGGCAAAGTGCAGAAGTGCGCCTG 178 ***************** ************* *** ************************ consensus_5343#0 CCAACACCACAAGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTAC 179 consensus_5343#1 CCAACGCCACAGGCGACCAGCTGCAGTGATCTGTTTACGATCGATCACGAAGATGCGTAC 238 ***** ***** ************************************************ consensus_5343#0 CGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCC-AACGTTACTGATCCGTTACGTCCA 238 consensus_5343#1 CGGAAGCAGTACGAGGGTACGCTGGTGCTGCGGCCCAACGTTAC-GATCCGTTACGTCCA 297 *********************************** ******** *************** consensus_5343#0 GATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAG 298 consensus_5343#1 GATGGTGGTGCAGTTCGATCGTCAAGTGGAGCAACTCACGAATTACTTTGGAAGAATCAG 357 ************************************************************ consensus_5343#0 CACCATCTGACCATCAGAGCTTTCACATCTGCCAATCTAACTGTACCCGTTACGCGCAGG 358 consensus_5343#1 CACCATC-GACCATCAGAGCTTTCACATC-GCCAATCTCAC-GTACCCGTTGCGCGCTGG 414 ******* ********************* ******** ** ********* ***** ** consensus_5343#0 CACAGTGGTCAAGATCCCGCGTAGAAGTTGTCTA-ACCACGTGGTTTCCCTCCGGCGGTC 417 consensus_5343#1 CACAGTGGTCAAGATCCCGC-TAGAAGTGTCCTACACCAC-CGGTTCCCCTCCGGCGGTC 472 ******************** ******* *** ***** **** ************* consensus_5343#0 AGCCGTATCGAAGTCTAACGGCGTTACGATCTGTCCAGTGGGCAATTTAAGACCTTTGAT 477 consensus_5343#1 AGCCGAATCGAAGTC-AACGGCGTTACGATCTGTCCTGTGGGCAATTTAAGACCTTTGAT 531 ***** ********* ******************** *********************** consensus_5343#0 CACGGAATTTCCGTGATCCATGGACGGGATCGGTAGTTGCCTGGGCTGCTGAGTACCACT 537 consensus_5343#1 CA-GGAATTTCCGTGATCCATGGACGGGATCGGTAGTG--CCGGGC--GCGAGTACCACG 586 ** ********************************** * **** ********* consensus_5343#0 GACCAGCCGGAAGTACACTCGAAAAATGGAACCACATGAACCGGCCATCAGTTCAACTCC 597 consensus_5343#1 ACCCAGCCGGAAGTACACTCGAAAAATGGAACCACAGAACCGGCCCATCAGTTCAACTCC 646 ********************************** * * * **************** consensus_5343#0 TCCTGGCAGNGCGATTCGTACCTGGGTGTTGATCGTGTCGTCGGGCCTGCATGGGACGCG 657 consensus_5343#1 TCCTGCCAGG-CGATTCGTACCGGGG---------------------------------- 671 ***** *** *********** *** consensus_5343#0 GTTATGAATCTCGTGGCCGAANAACGGTCGATCGGGCGTTGATAGAGGTCGTGTTCGATC 717 consensus_5343#1 ------------------------------------------------------------ consensus_5343#0 AGC 720 consensus_5343#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||