cluster # 5344

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Anopheles gambiae
cluster # 5344 cluster # 5344 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5344#0 length = 783 sequences # 2

consensus_5344#1 length = 543 sequences # 1
consensus_5344#2 length = 506 sequences # 1

consensusID : consensus_5344#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 783
fasta sequence

                              [CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCACTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTTAAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGTGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGTTTCAGAGAGGAAACTAAAATAAATAAAAGTATGTAATAGATATTTTTATTTATGTGTAATGGAAGATGAAATTATGAAAAATAAAA]

[+] EMBL BX616535             [CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCACTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTTAAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGTGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAG                                                                                                                                                                                                                                                                         ]
[+] EMBL BX608190             [                                                                                               AAGCGTAATGACAACTGCTTCATCACTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTTAAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGTTTCAGAGAGGAAACTAAAATAAATAAAAGTATGTAATAGATATTTTTATTTATGTGTAATGGAAGATGAAATTATGAAAAATAAAA]




>consensus_5344#0
CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACT
CAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCA
CTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTT
AAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACT
TTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAG
GAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCA
AACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGAT
TAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGTGGCAGCGACGGGCAGC
GTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTC
CAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTG
GTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATT
GTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGTTTCAGAGAGGAAACTAAAATAAA
TAAAAGTATGTAATAGATATTTTTATTTATGTGTAATGGAAGATGAAATTATGAAAAATA
AAA

consensusID : consensus_5344#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTTTAAGGGGGGGGGGCATTAATAGCAAAGTAGCACGACAGAGGTTTTAATAAAACTTTACCAACATTTTCCACTNTCCGCTCTGAGTCCCTTTTAATTGCTGCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGATTC]

[-] EMBL AL931547             [TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTTTAAGGGGGGGGGGCATTAATAGCAAAGTAGCACGACAGAGGTTTTAATAAAACTTTACCAACATTTTCCACTNTCCGCTCTGAGTCCCTTTTAATTGCTGCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGATTC]




>consensus_5344#1
TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTTTAAGGGGGGGGGGCATTAATAGCA
AAGTAGCACGACAGAGGTTTTAATAAAACTTTACCAACATTTTCCACTNTCCGCTCTGAG
TCCCTTTTAATTGCTGCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACG
TGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCA
GCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAA
CGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAG
CACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTT
TGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGC
GCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGA
TTC

consensusID : consensus_5344#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CGAGGCAAGAATCGGCACGNAGGTGCATACAACATAACTCACCATGATGTTTTGCAAACCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCACTATCTGAGTTATNTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCCCTTAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTCTGTGAACAATCAGTTGTTAATAAAACTTTACCAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTGTGCACAGGGACAGCAACATGGCCAAGAATCAATCAACTTAAGAATCGANAAGCCAAATCGTAAACAATTCAGCGCAGATTCAGNAACTGCGCTACTAAAACNNAGTGGCTAAACCAATGGCGTTGAATGTTA]

[+] EMBL BX467200             [CGAGGCAAGAATCGGCACGNAGGTGCATACAACATAACTCACCATGATGTTTTGCAAACCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCACTATCTGAGTTATNTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCCCTTAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTCTGTGAACAATCAGTTGTTAATAAAACTTTACCAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTGTGCACAGGGACAGCAACATGGCCAAGAATCAATCAACTTAAGAATCGANAAGCCAAATCGTAAACAATTCAGCGCAGATTCAGNAACTGCGCTACTAAAACNNAGTGGCTAAACCAATGGCGTTGAATGTTA]




>consensus_5344#2
CGAGGCAAGAATCGGCACGNAGGTGCATACAACATAACTCACCATGATGTTTTGCAAACC
AATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCA
AGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCACT
ATCTGAGTTATNTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCCCT
TAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTCTGTGAACAATCAGTTGTTAATAA
AACTTTACCAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCAAACATGCG
TTGAGGAGCATTTGTGCACAGGGACAGCAACATGGCCAAGAATCAATCAACTTAAGAATC
GANAAGCCAAATCGTAAACAATTCAGCGCAGATTCAGNAACTGCGCTACTAAAACNNAGT
GGCTAAACCAATGGCGTTGAATGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5344#0      CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACT 60
consensus_5344#1      ------------------------------------------------------------
consensus_5344#2      ------------------------------------------------------------
                                                                                  

consensus_5344#0      CAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCA 120
consensus_5344#1      ------------------------------------------------------------
consensus_5344#2      ------------------------------------------------------------
                                                                                  

consensus_5344#0      CTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTT 180
consensus_5344#1      ------------------------TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTT 36
consensus_5344#2      ------------------------------------------------------------
                                                                                  

consensus_5344#0      AAAAGAGGACA--AGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAA 238
consensus_5344#1      TAAGGGGGGGG--GGCA------TTAATAGCAAAGTAGCACGACAGAGGTTTTAATAAAA 88
consensus_5344#2      CGAGGCAAGAATCGGCACGNAGGTGCATA-CAACATAACTCACCATGATGTTTTGCAAAC 59
                        * *         * *      *  * *  **          **     * *   *** 

consensus_5344#0      CTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCA----AAATTC---T-CATTCAAAC 290
consensus_5344#1      CTTTACCAACATTTTCCACTNTCCGCTCTGAGTCCCTTTTAATTGC---TGCATTCAAAC 145
consensus_5344#2      CAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTC 119
                      *  **  ** *      *   **** *  **         **       * *** **  *

consensus_5344#0      ATGCGTTGAGGA-------GCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCA- 342
consensus_5344#1      ATGCGTTGAGGA-------GCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCA- 197
consensus_5344#2      AAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCAC 179
                      * *   ***  *       *** ***     **  ***    ** ***    *  **** 

consensus_5344#0      -ACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATT-CAGCAATGCGCTACTAAA 400
consensus_5344#1      -ACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCAGCAATGCGCTACTAAA 256
consensus_5344#2      TATCTGAGTTATNTGTTAAAACCTCTGTCGT--GCTACTTTGCTTTAATGCCCCCCC--- 234
                       *  * *  *        **** *      *  ** *  *  *   ***** *  *    

consensus_5344#0      CCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAG 460
consensus_5344#1      CCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAG 316
consensus_5344#2      CCCCCTTAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTC-TGTGAACAATCAGTTG 293
                      **      *** *   * *  **   * * * *        *   *  ***  ***** *

consensus_5344#0      TTGTGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCA 520
consensus_5344#1      TTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCA 376
consensus_5344#2      TTAATAAAACTTTAC-CAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCA 352
                      **     * *      ** * *  *  *   *         *  *  *  *  *    **

consensus_5344#0      AGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCA-GTTTGAGCTTTCATCAGT 579
consensus_5344#1      AGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCA-GTTTGAGCTTTCATCAGT 435
consensus_5344#2      AACATGCGTTGAGGAGCATTTGTGCACAGGGACA-GCAACATGGCCAAGAATCAATCAAC 411
                      * **     *   ***  *      * **  **  *** ** *    **  *  ****  

consensus_5344#0      GATGAGACCGTTCGGT-GGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCT 638
consensus_5344#1      GATGAGACCGTTCGGT-GGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCT 494
consensus_5344#2      TTAAGAATCGANAAGCCAAATCGTAA-ACAATTCAGCGCAGATTCAGNAACTGCGCTACT 470
                            * **    *     * ***  *   *     *  *  *  * *     *** **

consensus_5344#0      CCGGCAGT-TGAAAGATTCAATTGTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGT 697
consensus_5344#1      CCGGCAGT-TGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGATTC---------- 543
consensus_5344#2      AAAACNNAGTGGCTAAACCAATGGCGTTGAATGTTA------------------------ 506
                          *    **    *  **** *  ***   *                           

consensus_5344#0      TTCAGAGAGGAAACTAAAATAAATAAAAGTATGTAATAGATATTTTTATTTATGTGTAAT 757
consensus_5344#1      ------------------------------------------------------------
consensus_5344#2      ------------------------------------------------------------
                                                                                  

consensus_5344#0      GGAAGATGAAATTATGAAAAATAAAA 783
consensus_5344#1      --------------------------
consensus_5344#2      --------------------------