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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 873 fasta sequence
[CCGCGGACGCGTGGGCAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACTAGTCAGCAGAATAATAATTTTAGTGTTAACATTGGAAAGCTCCGGGTGGTAAAGGGCGACGGTCCTTAGGCAAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAGTGGGTGTTATGGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCACCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGGACCATTATTAATTATGTACTTGTATATGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCTTATTCGAACGGTGACCGGACGTTGATATCCCTTTTGCACTTCCATTTTGGAGGCGATTGAAACACTTACGATTGGAAGAGGTATTTTAGAACAATCTTCAGACAAACAGGGGAATTGGT-T-TTTTTGTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAAACAAATCCATAACAATCCCACAGTCGTAGCCGCGGCCCACGGGAATGGAATGGGAGACATGTGAATCGTCCTTTAAACGTAATGATGGTCGTATAACGTTTCTTCAATGTGTCATCAATGAATGTGTGTATGTGTGTTTGTGTGTGTGTCGGTGGCCCTTGTATGATTCGATGTCGTCTAGCGTGTTGTGTGCATGTATGTGCATGTATGTCTGTTAGGTTTTTTGGGGTTACTTTTTTGAGCAAATCAATCAGAATAAA]
[+] EMBL BM620365 [CCGCGGACGCGTGGGCAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACTAGTCAGCAGAATAATAATTTTAGTGTTAACATTGGAAAGCTCCGGGTGGTAAAGGGCGACGGTCCTTAGGCAAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAGTGGGTGTTATGGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCACCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGGACCATTATTAATTATGTACTTGTATATGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCTTATTCGAACGGTGACCGGACGTTGATATCCCTTTTGCACTTCCATTTTGGAGGCGATTGAAACACTTACGATTGGAAGAGGTATTTTAGAACAATCTTCAGACAAACAGGGGAATTGGT T TTTTTGTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAAACAAATCCATAACAATCCCACAGTCGTAGCCGCGGCCCACGGGAATGGAATGGGAGACATGTGAATCGTCCTTTAA ]
[+] EMBL BX610234 [ AGTGGGTGTTATGGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCATCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGGACCATTATTAATTATGTACTTGTATATGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCTTATGCGAACGGTGACCGGACGTTGATATCCCTTTTGCACTTCCATTTTGGAAGCGATTGGAACACTAACGATTGGAAGTGGTATTTTAGAACAATCTTCAGACAAACAGGGGAATTGGTGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAAACAAATCCATAACAATCCCACAGTCGTAGCCGCGGCCCACGGGAATGGAATTGGAGACATGTGAATCGTCCTTTAAACGTAATGATGGTCGTATAACGTTTCTTCAATGTGTCATCAATGAATGTGTGTATGTGTGTTTGTGTGTGTGTCGGTGGCCCTTGTATGATTCGATGTCGTCTAGCGTGTTGTGTGCATGTATGTGCATGTATGTCTGTTAGGTTTTTTGGGGTTACTTTTTTGAGCAAATCAATCAGAATAAA]
consensusID : consensus_5347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[AGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACTAGTCAGCAGAATAATAATTTTAGTGTTAACATTGGAAAGCTCCGGGTGGTAAAGGGCGACGGTCCTTAGGCAAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAGTGGGTGTTATGGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCATCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGGACCATTATTAATTATGTACTTGTATATGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCTTATGCGAACGGTGACCGGACGTTGATATCCCTTTTGCACTTCCATTTTGGAAGCGATTGGAACACTAACGATTGGAAGTGGTATTTTAGAACAATCTTCAGACAAACAGGGGAATTGGTGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGT]
[+] EMBL BX604771 [AGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACTAGTCAGCAGAATAATAATTTTAGTGTTAACATTGGAAAGCTCCGGGTGGTAAAGGGCGACGGTCCTTAGGCAAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAGTGGGTGTTATGGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCATCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGGACCATTATTAATTATGTACTTGTATATGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCTTATGCGAACGGTGACCGGACGTTGATATCCCTTTTGCACTTCCATTTTGGAAGCGATTGGAACACTAACGATTGGAAGTGGTATTTTAGAACAATCTTCAGACAAACAGGGGAATTGGTGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGT]
consensusID : consensus_5347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[GAATNNGCCCGAGGTTGTCTTAGTGCAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAGTGNGGTGTTATGTGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCATCCGACGTTCGTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGNGACCATTATTAATTATGTACTTGTATATTGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCGTTATGCGAACGGTGACCGGACGTTGATATCCCTTTTTGCACTTCCATTTTTGGAAGCGATTTGGAACACTAACGATTTGGAAGTGGTATTTTAGAACAATCTTCAGACAAACAGGGGAACTTGGTGGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAAACAAATCCATAACAATCCCACAGGT]
[+] EMBL AL931662 [GAATNNGCCCGAGGTTGTCTTAGTGCAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAGTGNGGTGTTATGTGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGCATTGCATCCGACGTTCGTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTCTATGNGACCATTATTAATTATGTACTTGTATATTGAGAACAAACAATCCTTTGTTATAGTTGTTCTGCGTTATGCGAACGGTGACCGGACGTTGATATCCCTTTTTGCACTTCCATTTTTGGAAGCGATTTGGAACACTAACGATTTGGAAGTGGTATTTTAGAACAATCTTCAGACAAACAGGGGAACTTGGTGGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCCCAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAAACAAATCCATAACAATCCCACAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5347#0 ---------------------------------CCGCGGACGCGTGGGCAGGAAGTAAGA 27
consensus_5347#2 ------------------------------------------------------------
consensus_5347#1 AGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAG 60
consensus_5347#0 TAACAAACTAAAGGAAACAAACAAACAAAAAAAGAAGCAAACAAGGAACCATAACTTCAG 87
consensus_5347#2 ------------------------------------------------------------
consensus_5347#1 ATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAG 120
consensus_5347#0 CACTAGTCAGCAGAATAATAATTTTAGTGTTAACATTGGAAAGCTCCGGGTGGTAAAGGG 147
consensus_5347#2 ---------------------------------------------------GAATNNGCC 9
consensus_5347#1 CACTAGTCAGCAGAATAATAATTTTAGTGTTAACATTGGAAAGCTCCGGGTGGTAAAGGG 180
* *
consensus_5347#0 CGACGGT-CCTTAGGCAAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAG 206
consensus_5347#2 CGAGGTTGTCTTAGTGCAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAG 69
consensus_5347#1 CGACGGT-CCTTAGGCAAAGAGCTGTTGGAAAAGAAAAGGCACACACACTCACACGCAAG 239
*** * * ***** *******************************************
consensus_5347#0 TGGG-TGTTATG-GGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGC 264
consensus_5347#2 TGNGGTGTTATGTGGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGC 129
consensus_5347#1 TGGG-TGTTATG-GGCAAACGACCCAAAAATCGTGAAACGTAACGCAGAAAACCAATGGC 297
** * ******* ***********************************************
consensus_5347#0 ATTGCACCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTC 324
consensus_5347#2 ATTGCATCCGACGTTCGTT-GCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTC 188
consensus_5347#1 ATTGCATCCGACGTTCGTTTGCTAGGGGAATGGCCCCGGTGTTAGGAGTATTACTCGTTC 357
****** ************ ****************************************
consensus_5347#0 TATGG-ACCATTATTAATTATGTACTTGTATAT-GAGAACAAACAATCCTTTGTTATAGT 382
consensus_5347#2 TATGNGACCATTATTAATTATGTACTTGTATATTGAGAACAAACAATCCTTTGTTATAGT 248
consensus_5347#1 TATGG-ACCATTATTAATTATGTACTTGTATAT-GAGAACAAACAATCCTTTGTTATAGT 415
**** *************************** **************************
consensus_5347#0 TGTTCTGC-TTATTCGAACGGTGACCGGACGTTGATATCCCTTTT-GCACTTCCATTTT- 439
consensus_5347#2 TGTTCTGCGTTATGCGAACGGTGACCGGACGTTGATATCCCTTTTTGCACTTCCATTTTT 308
consensus_5347#1 TGTTCTGC-TTATGCGAACGGTGACCGGACGTTGATATCCCTTTT-GCACTTCCATTTT- 472
******** **** ******************************* *************
consensus_5347#0 GGAGGCGATT-GAAACACTTACGATT-GGAAGAGGTATTTTAGAACAATCTTCAGACAAA 497
consensus_5347#2 GGAAGCGATTTGGAACACTAACGATTTGGAAGTGGTATTTTAGAACAATCTTCAGACAAA 368
consensus_5347#1 GGAAGCGATT-GGAACACTAACGATT-GGAAGTGGTATTTTAGAACAATCTTCAGACAAA 530
*** ****** * ****** ****** ***** ***************************
consensus_5347#0 CAGGGGAATT----GGTTTTTTTGTCATTAACGATTCACTCGCACGCTCAATCAAATCCC 553
consensus_5347#2 CAGGGGAACTTGGTGGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCC 428
consensus_5347#1 CAGGGGAATTGG--TGTGTTTTTTTCATTAACGATTCACTCGCACGCTCAATCAAATCCC 588
******** * ** ***** ************************************
consensus_5347#0 CAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAA 613
consensus_5347#2 CAACCCTTTATATTGTTAGTGAAGGTAGTAATTTATTGCAAACAACAAGAAAAAAAGTAA 488
consensus_5347#1 CAACCCTTTATATTGTTAGTGAAGGT---------------------------------- 614
**************************
consensus_5347#0 ACAAATCCATAACAATCCCACAGTCGTAGCCGCGGCCCACGGGAATGGAATGGGAGACAT 673
consensus_5347#2 ACAAATCCATAACAATCCCACAGGT----------------------------------- 513
consensus_5347#1 ------------------------------------------------------------
consensus_5347#0 GTGAATCGTCCTTTAAACGTAATGATGGTCGTATAACGTTTCTTCAATGTGTCATCAATG 733
consensus_5347#2 ------------------------------------------------------------
consensus_5347#1 ------------------------------------------------------------
consensus_5347#0 AATGTGTGTATGTGTGTTTGTGTGTGTGTCGGTGGCCCTTGTATGATTCGATGTCGTCTA 793
consensus_5347#2 ------------------------------------------------------------
consensus_5347#1 ------------------------------------------------------------
consensus_5347#0 GCGTGTTGTGTGCATGTATGTGCATGTATGTCTGTTAGGTTTTTTGGGGTTACTTTTTTG 853
consensus_5347#2 ------------------------------------------------------------
consensus_5347#1 ------------------------------------------------------------
consensus_5347#0 AGCAAATCAATCAGAATAAA 873
consensus_5347#2 --------------------
consensus_5347#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||