These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACACACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTTGCTTCGTTAAATTATAATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACATACACACTCACAACGTGTTGGGATTAGCAGTCGAAATAGGCAAACATACACTAACAAACAAAAAAAACACACACACACACAAAGAACTCAAATAACAACG] [+] EMBL BM608861 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACACACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTTGCTTCGTTAAATTATAATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACATACACACTCACAACGTGTTGGGATTAGCAGTCGAAATAGGCAAACATACACTAACAAACAAAAAAAACACACACACACACAAAGAACTCAAATAACAACG] consensusID : consensus_5354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTGAAAAGCGGCACTAGTGTGTGTGCGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAACTAGGAAAAGGGAGAAGAGGATTAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTGGGCGTGTATGTGTGTGTGTATCATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAACCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTTAGTTTAGTGAATTTAAACGATTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTATGCTTCGTTAAAGTTATAATGCACATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAACGGGGATAAAAACAATCGTTTGAGATTACTGTCCCGAATGGCGGAGTCCTGCTTGTGAACACTTGCCATATCCTTGTCTGATCGTANNGGCTCAAAAGAGGACACGAAACGAGAAGCACGACACACGATACACGCTT] [+] EMBL BX469676 [ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTGAAAAGCGGCACTAGTGTGTGTGCGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAACTAGGAAAAGGGAGAAGAGGATTAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTGGGCGTGTATGTGTGTGTGTATCATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAACCCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGTTTAGTTTAGTGAATTTAAACGATTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAATATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGGGTGGGCTTTATGCTTCGTTAAAGTTATAATGCACATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAACGGGGATAAAAACAATCGTTTGAGATTACTGTCCCGAATGGCGGAGTCCTGCTTGTGAACACTTGCCATATCCTTGTCTGATCGTANNGGCTCAAAAGAGGACACGAAACGAGAAGCACGACACACGATACACGCTT] consensusID : consensus_5354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGTACGAGCCGCAAGGGAAACTCTGTGTGTGCATCATAATAATAATATCCGCAGCTACGGGATCGCGTTTTGCCGCGGGTGATGATGGAAAAATTGTTAACCCAGCCTCCTCAGCAAACAGTGGCAAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTACCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACACACACACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACACACAACATGTTGGAGTAGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACACACACACACAAAGAACTCAAATAACAACGATACCACAAAGTTGTGTAACCCGCAATGTGTGCTCTGTGTGTGT] [+] EMBL BM647070 [CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGTACGAGCCGCAAGGGAAACTCTGTGTGTGCATCATAATAATAATATCCGCAGCTACGGGATCGCGTTTTGCCGCGGGTGATGATGGAAAAATTGTTAACCCAGCCTCCTCAGCAAACAGTGGCAAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGATTACTGTACCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCATATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACACACACACACATACACGCTTAACACGCATCCAATTCCATCCTCGATGTGTTATTTGTAACCGGGAAAGGTCGCGTTATGGAACTTCTTCTTTAAAGCTTTTGAGTGAGATTGACAGTTGTACAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACACACAACATGTTGGAGTAGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACACACACACACAAAGAACTCAAATAACAACGATACCACAAAGTTGTGTAACCCGCAATGTGTGCTCTGTGTGTGT] consensusID : consensus_5354#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GATCGCCCGAGGGCTTNTGCTTCGCTTATATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGAGTCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGGGAACAACTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCAATTACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT] [+] EMBL AL931775 [GATCGCCCGAGGGCTTNTGCTTCGCTTATATGCAAATTGAGCGAAAACGTAAGGGTTTACTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGAGTCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGGGAACAACTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCAATTACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5354#1 ------------------------------------------------------------ consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCAAATGGGGAAACTGCTGGCACATTAACTAA 60 consensus_5354#2 ------------------------------------------------------------ consensus_5354#1 ----------------------ATCGGNCACGAGGNNTAGTCGAGAGCCATTCGCTTTTG 38 consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 GACGAACTTGACGAATCACGAACGCTGTTCAGTTTAGTGAATTTAAACGATTCTTGACAC 120 consensus_5354#2 ----------------------------CCGCCCACGCGTCCGAAAAAAGGTCGCGTTGT 32 consensus_5354#1 AAAAGCGGCACTAGTGTGTGTGCGTGTGAGTGTACAGAGAGGTGCTTCGGGAGATAGGAA 98 consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 ACACACAACAAAAAACGGTTCCTTTTTTAATATGACTGACCAAGGATCAGCAGCAGTGTT 180 consensus_5354#2 ACGAGCCGCAAGGGAAACTCTGTGTGTGCATCATAATAAT--AATATCCGCAGCTACG-- 88 consensus_5354#1 CTAGGAAAAGGGAGAAGAGGATTAGCGACGCGCCAGATGAATGGGTTGGGTCCGTGTGTG 158 consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 TGGTGCGCAACCATAATTTAGCTA-GGATG-GGTGGGCTTTTGCTTC-GTTAAATTATAA 237 consensus_5354#2 -GGATCGCGTTTTGCCGCGGGTGA-TGATG-GAAAAATTGTTAACCCAGCCTCCTCAGCA 145 consensus_5354#1 GGCGTGTATGTGTGTGTGTATCATCTTTGTGTCCGCTGCTTTTAGAAAGACTGGAGGAAC 218 consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 TGCAA-ATTGAGCGAAAACGTAA-----GGGTTTACTG--TGGGGAAAAAGGGGATAAAA 289 consensus_5354#2 AACAGTGGCAAGCGAAAACGTAA-----GGGTTTACTG--TGGGGAAAAAGGGGATAAAA 198 consensus_5354#1 CCAAATGGGGAAACTGCTGGCACATTAACTAAGACGAACTTGACGAATCACGAACGCTGT 278 consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 ACAATGTTTGAGATTACTG---TCCCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCAT 346 consensus_5354#2 ACAATGTTTGAGATTACTG---TACCGAATGGAGGAGTCCTGCTTGTGAACACTTGCCAT 255 consensus_5354#1 TTAGTTTAGTGAATTTAAACGATTCTTGACACACACAACAAAAAACGGTTCCTTTTGTAA 338 consensus_5354#3 ------------------------------------------------------------ consensus_5354#0 ATCCTTCTTATCGTTGGCTCAAAAGAGGACACAAACAAACACACACACATACACATACAC 406 consensus_5354#2 ATCCTTCTTATCGTTGGCTCAAAAAAGGACACAAACAAACACACACACACACACATACAC 315 consensus_5354#1 TATGACTGACCAAGGATCAGCAGCAGTGTTTGGTGCGCAACCATAATTTAGCTAGGATGG 398 consensus_5354#3 -------------------------------------------------------GATCG 5 consensus_5354#0 ----GCTTAACACGCATCCAATTCCATCCTCGATGTGTTATT----TGTAACCGGGAAAG 458 consensus_5354#2 ----GCTTAACACGCATCCAATTCCATCCTCGATGTGTTATT----TGTAACCGGGAAAG 367 ** * consensus_5354#1 GT--GGGCTTTATGCTTCGTTAAAGTTATAATGCACATTGAGCGAAAACGTAAGGGTTTA 456 consensus_5354#3 CCCGAGGGCTTNTGCTTCGCT-----TATA-TGCAAATTGAGCGAAAACGTAAGGGTTTA 59 consensus_5354#0 GTCGCGTTATGGAACTTCTTC-----TTTAAAGCTT-TTGAGTGAGATTG-ACAGTTGTA 511 consensus_5354#2 GTCGCGTTATGGAACTTCTTC-----TTTAAAGCTT-TTGAGTGAGATTG-ACAGTTGTA 420 * * **** * ** ** ***** ** * * * * * ** consensus_5354#1 CTGTGGGGAAAACGGGGATAAAAACAATCGTTTGAGATTACTGT---CCCGAATGGCGGA 513 consensus_5354#3 CTGTGGGGAAAAAGGGGATAAAAACAATGTTTGAGGATTACTGTGATCCGAGATGGAGGA 119 consensus_5354#0 CAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACATA----CACACTCACAAC 567 consensus_5354#2 CAGTACAGAAGAAAAAAAAACAAACAACAAACCCAAAACACACA----CACA------AC 470 * ** *** * * * ****** * ** * consensus_5354#1 GTCCTGCT-TGTGAACACTTGCCATATCCTTGTCTGATCGTANNGGC--TCAAAAGAGGA 570 consensus_5354#3 GTCCTGCTATGTGAACACTTGCCATATCCTTCTTTATCGGTTGGCGTCATAACAACAGGG 179 consensus_5354#0 GTGTTGGG--ATTAGCAGTCGAAATAGGCAAACATACACTAACAAACAAAAAAAA-CACA 624 consensus_5354#2 ATGTTGGA--GT-AGCAGTCGATATAGGCAAACATACACTCACAAACAAAAAAAAACACA 527 * ** * * ** * * *** * * * ** consensus_5354#1 CACGAA-ACGAGAAGCACGACACACGATACACGCTT------------------------ 605 consensus_5354#3 GAACAA-CTAAAANACGCTATANAAACNAAACGAAACNAAACAACACAACCAACCAACCA 238 consensus_5354#0 CACACACACAAAGAACTCAAATAACAACG------------------------------- 653 consensus_5354#2 CACACACACAAAGAACTCAAATAACAACG-ATACCACAAAGTTGTGTAACCCGCAATGTG 586 * * * * * * * consensus_5354#1 -------------------------------------- consensus_5354#3 ATTACCNAACGGCCCTTAAGACAACGGCAATTCCAAAT 276 consensus_5354#0 -------------------------------------- consensus_5354#2 TGCTCTGTGTGTGT------------------------ 600 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||