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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1193 fasta sequence
[GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGGAGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGCCATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTGTCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG]
[+] EMBL AL931944 [GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGGAGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGCCATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTGTCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAAC ]
[+] EMBL CNS08J6K [ TGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTTTGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGG GCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG]
[+] EMBL CNS08ZU4 [ cgTTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAA ]
consensusID : consensus_5359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATGAACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGATACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGCGGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCCGGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC]
[+] EMBL BM617270 [CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATGAACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGATACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGCGGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCCGGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5359#0 GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAA 60
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 CAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGG 120
consensus_5359#1 -------------------------------------------------------CCGGG 5
** **
consensus_5359#0 AGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGC 180
consensus_5359#1 CGTTTATCTGAGCATCCTTCCAGTT---GCTGGACCCG-------AAACCAATCGCACAA 55
* *** * * * ** * **** * ****** * * *
consensus_5359#0 CATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTG 240
consensus_5359#1 AAATGAAC--GCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGG 113
* * * ** * * * ** * * ***** * ** * ** ** *** *
consensus_5359#0 TCGAAATGGAAATGTGCATCCCATTTCCGG--GGGCGGAAAAGGTAGATGGGATGGGTAA 298
consensus_5359#1 T-GGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCG 172
* * * * ***** * ** * ***** * * *
consensus_5359#0 G-CGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCG 357
consensus_5359#1 GACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGG--GGACA 230
* ** *** * * ** ** ** * * * * ** * * * *
consensus_5359#0 CAAGAACGTGCCACAGCTGTGGGCAGT-CTTGCCGAAAGGCGCCACTGATCGCTTGCGAT 416
consensus_5359#1 CAATAACG----ATACGTGCGATTCGTGCAAGGAGGGCGGCGC-ACTGCTCTGCTGCGAC 285
*** **** * * ** * ** * * * ***** **** ** *****
consensus_5359#0 TACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACG 476
consensus_5359#1 CGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATA 345
*** ******* ** **** ******** ** *** * *
consensus_5359#0 ACG-ATGTGGA-TGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAAC--TGGTCAC 532
consensus_5359#1 CCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGAC 405
** * * * * ** * * * **** ** * * * * * *** * ** **
consensus_5359#0 CTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCA 592
consensus_5359#1 GCGTGGGGTACGGGCGGAAAGC-TACGGGTGCGCGATCG---CAGC--CTGTCCCACAAA 459
** * * ** ** ***** ** * **** **** * * *
consensus_5359#0 CGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTT 652
consensus_5359#1 AGCTTCACCTCGAGC--AGCTCCGGCGGTAAGCAT-TCGCACGAT------------GGT 504
* * * * * * *** *** *** **** * * *
consensus_5359#0 GAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCAC-CGTCGATCGAGTATCACT 711
consensus_5359#1 GACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATT 564
** ** * ***** *** * ** * * ** ** * * *** * *
consensus_5359#0 ACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGA 771
consensus_5359#1 ----GCGATGAGTTCAGCTGCTTCGCTGGC------------------------------ 590
** * * * ****** * * **
consensus_5359#0 ACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTAC 831
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 AGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAA 891
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 ACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAAC 951
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 GGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAA 1011
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 GATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGA 1071
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 TGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAA 1131
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 CATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCC 1191
consensus_5359#1 ------------------------------------------------------------
consensus_5359#0 GG 1193
consensus_5359#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||