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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1212 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGCACACGGCCGAGCAGGATCGGAAAAATCTCACCGCAAACACAGTGCACCGACGGTTACCGTTTCCCCCACTCACCCGTTCCTCCCTGCGCTCTATACGCCGCGTGACACGTGGAGAGCAAGAAGCGTCGTCGTCGTCGCCTACTGTTTGGTTCTATTTATTGCGGACGGGGTTCATCAGATTTTAACGACCAAAATTAGTGGTTTGTAGTGGGACAAGATCACATCAACGAAGCGTGAAGACCCCCCGTTATTATAGCCAGTGCGACAGCGTGATAAAAGTGCATCCAGTGTATGTGTGTGCAATGCAGCGCACAGCGAGTGTGGCCGGGACATTGCATAACGGATAAAAAATAGGTGCCTCTGCCACCCAAAATCCACTCCACCCAGGCCGAACGTGGCTGTTGTGGCCCTTTTCCCCGGGAAACACGTGGAGAGCAAGCCGGGCCTACAATTTAACGACCCGCTTACACACCTGCAAAAACGTGCTCGGCCGGCAGCTCGGCTCGGGAGCAAATCGATCATACTACAAAATGCATTTCCGCACACTGTCGTACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCTACCGTCTGTCGAATGTGGCAAGATACTGTTCCTCGTCCCATTCCCAGCACCATCCCACTGGCTGTGGATAGAGCACTTCGTCAAGGAGCTGCTGTCCCGGGGGCACGAGGTAACGGCGATCACTAACTTCCCTGCGAAGGAAGCGCACCGCAACTACACGGAAATACTGATCGATCCACCGTACGATATACCTTACTACTTTCCCGTGTCGGATATCTACGATTCGAAGTACAACAGTGATCTTAACAACCTGTTCCTCTACTGGAGGGTAGGCATTTCGACGACACAGTACGCGCTGGAGAACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAATTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATTGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCAGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGAGCCGATCTGGTGATACGGCAGCT]
[+] EMBL BM576701 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCACACGGCCGAGCAGGATCGGAAAAATCTCACCGCAAACACAGTGCACCGACGGTTACCGTTTCCCCCACTCACCCGTTCCTCCCTGCGCTCTATACGCCGCGTGACACGTGGAGAGCAAGAAGCGTCGTCGTCGTCGCCTACTGTTTGGTTCTATTTATTGCGGACGGGGTTCATCAGATTTTAACGACCAAAATTAGTGGTTTGTAGTGGGACAAGATCACATCAACGAAGCGTGAAGACCCCCCGTTATTATAGCCAGTGCGACAGCGTGATAAAAGTGCATCCAGTGTATGTGTGTGCAATGCAGCGCACAGCGAGTGTGGCCGGGACATTGCATAACGGATAAAAAATAGGTGCCTCTGCCACCCAAAATCCACTCCACCCAGGCCGAACGTGGCTGTTGTGGCCCTTTTCCCCGGGAAACACGTGGAGAGCAAGCCGGGCCTACAATTTAACGACCCGCTTACACACCTGCAAAAACGTGCTCGGCCGGCAGCTCGGCTCGGGAGCAAATCGATCATACTACAAAATGCATTTCCGCACACTGTCGTACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCTACCGTCTGTCGA ]
[+] EMBL BM637900 [ ccgCGATCATACTACAAAATGCATTTCCGCGCACTGTCGTACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCCAACGTCTGTCGAATGTGGCAAGATACTGTTCCTCGTCCCATTCCCAGCACCATCCCACTGGCTGTGGATAGAGCACTTCGTCAAGGAGCTGCTGTCCCGGGGGCACGAGGTAACGGCGATCACTAACTTCCCTGCGAAGGAAGCGCACCGCAACTACACGGAAATACTGATCGATCCACCGTACGATATACCTTACTACTTTCCCGTGTCGGATATCTACGATTCGAAGTACAACAGTGATCTTAACAACCTGTTCCTCTACTGGAGGGTAGGCATTTCGACGACACAGTACGCGCTGGAGAACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAATTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATTGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCAGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGAGCCGATCTGGTGATACGGCAGCT]
consensusID : consensus_5364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1123 fasta sequence
[GCAAGAATCCCCCGAGGTNGCACGAGGCGACGACACAGTACGCGCTGGAGGACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAGTTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATCGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCGGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGGCCGATCTGGTGATACGGCAGCTTTACTACATCCCCCAGCAGAACAGGCTCGCTCAGATACACTTTGCCAAAATAGAAGGTCCCGAGCTGATGCCTTCGATTCGAGATCTCGAAAAGTCCATCTCTGTGATACTGGTCAACAGTCACCTGTCGACGTCACCCCCGCGACCCACCATCCCCGGCCTGGTGAATGTGGCCGGCGCACACATCAAGCCGGCAAAAGAGCTACCCGACGACATCCGGAAGTTCCTGGACGGTGCCAAAGAGGGCGTCATCTTCTTCAGCCTCGGCTCGTACATGAAGAGCGCCGACATGCCCAAGGACAAGATGAAAGCGTTCCTGGAGGTGTTCCGCAATATCAAGCAGCGCGTACTGTGCAAGTACGAAAACGAGGACGTTGCCCGGCTGCCGAAAAACGTGATGGTGCGCAAGTGGCTAACCCAAAGCGACATCCTAGCCCA-CCGAAGGTGGTACTGTTCATCACGCACGGCGGTATGTTTGGCAGCCAGGAGGGCATCTACCGCGGAGTGCCCATGCTGTACATACCGTTCTACGGGGATCAGCATCGCAATGCGCTCAAGGCGGAGCAGGCAGGCTACGCACTGACGCTCAACTTCCCCGAGGTGAACGTCATCACGCTCGGTTCGCGCATTAACGAGCTGCTCACGAACCCGACGTTCATGAAGCAGGCAAAACGGGCGTCGGAACTGTTCCGGGACAATCTCGTGCCGCCGATGCAGGAAGCGATGCACTGGATCGAGTACGTGATGCGGCACAAGGGCGCAAAGCATCTGAAGACGCGCGCGATC]
[+] EMBL AL932000 [GCAAGAATCCCCCGAGGTNGCACGAGGCGACGACACAGTACGCGCTGGAGGACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAGTTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATCGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCGGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGGCCGATCTGGTGATACGGCAGCTTTACTACATCCCCCAGCAGAACAGGCTCGCTCAGATACACTTTGCCAAAATAGAAGGTCCCGAGCTGATGCCTTCGATTCGAGATCTCGAAAAGTCCATCTCTGTGATACTGGTCAACAGTCACCTGTCGACGTCACCCCCGCGACCCACCATCCCCGGCCTGGTGAATGTGGCCGGCGCACACATCAAGCCGGCAAAAGAGCTACCCGACGACATCCGGAAGTTCCTGGACGGTGCCAAAGAGGGCGTCATCTTCTTCAGCCTCGGCTCGTACATGAAGAGCGCCGACATGCCCAAGGACAAGATGAAAGCGTTCCTGGAGGTGTTCCGCAATATCAAGCAGCGCGTACTGTGCAAGTACGAAAACGAGGACGTTGCCCGGCTGCCGAAAAACGTGATGGTGCGCAAGTGGCTAACCCAAAGCGACATCCTAGCCCA CCGAAGGTGGTACTGT ]
[+] EMBL BX618498 [ ACGAAAACGAGGACGTTGCCCGGCTGCCGAAAAACGTGATGGTGCGCAAGTGGCTACCCCAAAGCGACATCCTAGCCCACCCGAAGGTGGTACTGTTCATCACGCACGGCGGTATGTTTGGCAGCCAGGAGGGCATCTACCGCGGAGTGCCCATGCTGTACATACCGTTCTACGGGGATCAGCATCGCAATGCGCTCAAGGCGGAGCAGGCAGGCTACGCACTGACGCTCAACTTCCCCGAGGTGAACGTCATCACGCTCGGTTCGCGCATTAACGAGCTGCTCACGAACCCGACGTTCATGAAGCAGGCAAAACGGGCGTCGGAACTGTTCCGGGACAATCTCGTGCCGCCGATGCAGGAAGCGATGCACTGGATCGAGTACGTGATGCGGCACAAGGGCGCAAAGCATCTGAAGACGCGCGCGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5364#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGCACACGGCCGAGCAGGATCGGAAAAATCTC 60
consensus_5364#1 --------------------------GCAAGAATCCCCCGAGGTNGCACGAGGCGACGAC 34
** * * ***** * ** * *
consensus_5364#0 ACCGCAAACACAGTGCACCGACGGT---TACCGTTTCCCCCACTCACCCGTTCCTCCCTG 117
consensus_5364#1 ACAGTACGCGCTGGAGGACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTT 94
** * * * * * *** * * * *** * * ** * * **
consensus_5364#0 CGCTCTATACGCCGCGTGACACGTGGAGAGCAAGAAGCGTCGTCGTCGTCGCCTACTGTT 177
consensus_5364#1 TGATGTGATCATCTCGGAGCAGTTCTA--TCAGGAAGCGT--TCCTCAT-GTTTGCCCAC 149
* * * * * ** ** * * ** ******* ** ** * * * *
consensus_5364#0 TGGTTCTATTTATTGCGGACGGGGTTCATCAGATTTTAACGACCAAAATTAGTGGTTT-- 235
consensus_5364#1 AAGTACCGGGCGCCGATCGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAA 209
** * * * * ** ** ** * **** * * *
consensus_5364#0 GTAGTGGGACAAGATCACATCAACGAAGCGTGAAGACCCCCCGTTATTATAGCCAGTGCG 295
consensus_5364#1 GCGATGGGACTCG-TTACACCGTGGTCATTTGTTCCTCACCCGGTACTGCTGCT-GTCCG 267
* ****** * * *** * * ** * **** ** * ** ** **
consensus_5364#0 ACAGCGTGATAAAAGTGCATCCAGTG-TATGTGTGTGCAATGCAGCGCACAGCGAGTGTG 354
consensus_5364#1 ACGATATGACATTC-TCCGAGCGGTGCTACAACTTTCTGATCTCAC---TGGCCGATCTG 323
** *** * * * * *** ** * * ** * ** * **
consensus_5364#0 GCCGGGACATTGCATAACGGATAAAAAATAGGTGCCTCTGCCACCCAAAATCCACTCCAC 414
consensus_5364#1 GTGATACGGCAGCTTTACT-ACATCCCCCAGCAGAACAGGCTCGCTCAGATACACTTTGC 382
* ** * ** * * ** * ** * * ** **** *
consensus_5364#0 CCAGGCCGAACGTGGCTGTTGTGGCCCTTTTCCCCGGGAAACACGTGGAGAGCAAGCCGG 474
consensus_5364#1 CAAAATAGAAGGTC-CCGAGCTGATGCCTTCGATTCGAGATCTCGAAAAGTCCATCTCTG 441
* * *** ** * * ** * ** * * * ** ** ** * *
consensus_5364#0 GCCTACAATTTAACG---ACCCGCTTAC---ACACCTGCAAA--AACGTGCTCGGCCGGC 526
consensus_5364#1 TGATACTGGTCAACAGTCACCTGTCGACGTCACCCCCGCGACCCACCATCCCCGGCCTGG 501
*** * *** *** * ** ** ** ** * * * * * ***** *
consensus_5364#0 --AGCTCGGCTCGGGAGCAAATCGATCATACTACAAAA-TGCATTTCCGCACACTGTCGT 583
consensus_5364#1 TGAATGTGGCCGGCGCACACATCAAGCCGGCAAAAGAGCTACCCGACGACATCCGGAAGT 561
* *** * * ** *** * * * * * * * * * ** * * **
consensus_5364#0 ACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCTACCGTCTGTCGAATGTGGCA 643
consensus_5364#1 TCCTGGACGGTGCCAAAGAGGGCGTCATCTTCTTCAGCCT--CGGC--TCGTACATGAAG 617
* * **** * * * * * * ** * ** ** * *** * **
consensus_5364#0 AGATACTGTTCCTCGTCCCATTCCCAGCACCATCCCACTGGCTGTGGATAGAGCACTTCG 703
consensus_5364#1 AG----CGCCGACATGCCCAAGGACAAGATGAAAGCGTTC-CTGGAGGTGTTCCGCAATA 672
** * **** ** * * * * *** * * * *
consensus_5364#0 TCAAGGAGCTGCTGTCCCGGGGGCACGAGGTAACGGCGATCACTAACTTCCCTGCGAAGG 763
consensus_5364#1 TCAAGCAGCGCGTACTGTGCAAGTACGAA--AACGAGGAC-----GTTGCCCGGCTGCCG 725
***** *** * * * **** **** ** * *** ** *
consensus_5364#0 AAGCGCACCGCAACTACACGGAAATACTGATCGATCCACCGTACGATATACCTTACTACT 823
consensus_5364#1 AAA---AACGTGATGGTGCGCAAG---TGGCTAACCCAAAG--CGACATCC-----TAGC 772
** * ** * ** ** ** * *** * *** ** * **
consensus_5364#0 TTCCCGTGTCGGATATCTACGATTCGAAGTACAACAGTGATCTTAACAACCTGTTCCTCT 883
consensus_5364#1 CCACCGAAGGTGGTACTGTTCATC--ACGCACGGCGGTATGTTTGGCAGCCAGGAGGGCA 830
*** * ** ** * * ** * ** ** ** ** * *
consensus_5364#0 ACTGGAGGGTAGGCATTTCGACGACACAGTACGCGCTGGAGAACGAGAATGTGCA--GCA 941
consensus_5364#1 TCTACCGCGGAG------TGCCCATGCTGTACATACCGTTCTACGGGGATCAGCATCGCA 884
** * * ** * * * * **** * * *** * ** *** ***
consensus_5364#0 GTTCA-TCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAATTCTATCAGG 1000
consensus_5364#1 ATGCGCTCAAGGCGGAGCAGGCAGGCTACGCACTGACGCTCA------ACTTCCCCGAGG 938
* * ** ** *** * * * ** * *** ** * *** ***
consensus_5364#0 AAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATTGTGACGCTCTGCACCCTTG 1060
consensus_5364#1 TGAACGTCATCACGCTCGGTT--------CGCGCATTAAC-GAGCTGCTCACGAACCCGA 989
** *** * * * ** ** * * * **** * **
consensus_5364#0 GGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTC 1120
consensus_5364#1 CGTTCATGAAGCAGGCAAAACGGGCGTCGGAACT-GTTCCGGGACAATCTCGTGCCGCCG 1048
* ** ** * * *** ** *** *** * ** ** *
consensus_5364#0 ACCCAGTAC----TGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTT 1176
consensus_5364#1 ATGCAGGAAGCGATGCACTGGATCGAGTACGTGATGCGGCACAAG-GGCGCAAAGCATCT 1107
* *** * *** * *** * *** * ** ** ** * * *
consensus_5364#0 CTGATCTCACTGAGCCGATCTGGTGATACGGCAGCT 1212
consensus_5364#1 GAAGACGCGCGCGATC-------------------- 1123
* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||