These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence [GAATCCCCCGAGGTGTAATAACATGTACTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTAGAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCGCGCCGTGGAGCCCTTGCTGGACGCCGAAAAAAGCTACAAGAAGAGGTTTTCAAAAATTTTGGAACCACTTAGCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGCTGAACAGCATGGGATACAAAACCGTTATACAGGTTCCCGGTTCTGAACAGACGCTCAAGAACAGTAACGCAAATATAATGGACTATTTGCGGCGCATCGTGCCACGCATGTTCCAAAACACCTTGTCCCTTCTATCTCGACAAATCATCCAACAGTTCTTGAATGAGCTGGTGTGGCGTGAGCTGTATGGCAACAGCCCCGGCACAACATTCGATAACATAGTAAAACACTTATCTGAGGAAGCGAAAATTGAAACAAAGGAAAGTTTGACTACTCGCCTTCATAAGGCCGCCGCAGATCCCTTCAAGCAGTGGGAAATTGTATCCGATATGCCAGCGTTGGGCAAAGTTCCTGGTAAACGAGGCCGAAAACCCAAGGATCAATCGTTGTAGAGTTTGAAGAGAGGTAGAGGGACAAATTTTTGTACGCCATTTTTCAAACCCGCGCGCTCGCCCGCCTTTCTCTTCTAGATATGCTAGTTTTAGTTCGTAACGAAGTAATTGAATTACCACGTAATGTTATGTTCTGCAGAACCAACCATAGGAGT] [+] EMBL AL932285 [GAATCCCCCGAGGTGTAATAACATGTACTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTAGAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCGCGCCGTGGAGCCCTTGCTGGACGCCGAAAAAAGCTACAAGAAGAGGTTTTCAAAAATTTTGGAACCACTTAGCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGCTGAACAGCATGGGATACAAAACC ] [+] EMBL BX626146 [ GGGAACTACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTAGAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCGCGCCGTGGAGCCCTTGCTGGACGCCGAAAAAAGCTACAAGAAAAGGTTTTCAAAAATTTTGGAACCACTTAGCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGCTGAACAGCATGGGATACAAAACCGTTATACAGGTTCCCGGTTCTGAACAGACGCTCAAGAACAGTAACGCAAATATAATGGACTATTTGCGGCGCATCGTGCCACGCATGTTCCAAAACACCTTGTCCCTTCTATCTCGACAAATCATCCAACAGTTCTTGAATGAGCTGGTGTGGCGTGAGCTGTATGGCAACAGCCCCGGCACAACATTCGATAACATAGTAAAACACTTATCTGAGGAAGCGAAAATTGAAACAAAGGAAAGTTTGACTACTCGCCTTCATAAGGCCGCCGCAGATCCCTTCAAGCAGTGGGAAATTGTATCCGATATGCCAGCGTTGGGCAAAGTTCCTGGTAAACGAGGCCGAAAACCCAAGGATCAATCGTTGTAGAGTTTGAAGAGAGGTAGAGGGACAAATTTTTGTACGCCATTTTTCAAACCCGCGCGCTCGCCCGCCTTTCTCTTCTAGATATGCTAGTTTTAGTTCGTAACGAAGTAATTGAATTACCACGTAATGTTATGTTCTGCAGAACCAACCATAGGAGT] consensusID : consensus_5377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence [CCGAAAACGACGCCCGTGCCCGCGAAAAAAACGAGAGAAGAAAAGGTCAAAACTCCGGATCCGAAGATCAAATCGCCGAAAACCCCTGGTTTAACACCAAAGGTCGCCGCTATTTCTGTACGACCCACCGAATTCAACTCCATCGGAGGGTTGCAAGTCGGCGCGGAAAAGGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCGTGGTCGATCTTACGAAAGATGATTCGGGCAAACCGACGGCCGATTCGCGAGAAATATCTTTCAGCAAGATTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGCGTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTCGTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAACAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGCAAATTCCCGTACTCGGGTGGCTACTTTTGGATCAGTGATTGTTGTCCGACTAGGTTCACGTCTGTGTTCCATGGTTCGCTATTCGAGGGTTCACCACATCCTCCGTCAGTAATATTGAAGCTGATCTACCACTGGGCCTGCCAAACGAACGTATCCAACGTGGTGAACTGGGTGAAGGTCGATAACATGTACCTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACNCAGGATGGGCAGCAGCGTCA] [+] EMBL BM603150 [CCGAAAACGACGCCCGTGCCCGCGAAAAAAACGAGAGAAGAAAAGGTCAAAACTCCGGATCCGAAGATCAAATCGCCGAAAACCCCTGGTTTAACACCAAAGGTCGCCGCTATTTCTGTACGACCCACCGAATTCAACTCCATCGGAGGGTTGCAAGTCGGCGCGGAAAAGGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCGTGGTCGATCTTACGAAAGATGATTCGGGCAAACCGACGGCCGATTCGCGAGAAATATCTTTCAGCAAGATTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGCGTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTCGTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAACAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGCAAATTCCCGTACTCGGGTGGCTACTTTTGGATCAGTGATTGTTGTCCGACTAGGTTCACGTCTGTGTTCCATGGTTCGCTATTCGAGGGTTCACC ] [+] EMBL BX620007 [ GGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCGTGGTCGATCTTACGAAAGATGATTCGGGCAAACCGACGGCCGATTCGCGAGAAATATCTTTCAGCAAGGTTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGCGTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTCGTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAACAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGCAAATTCCCGTACTCGGGTGGCTACTTTTGGATCAGTGATTGTTGTCCGACTAGGTTCACGTCTGTGTTCCACGGTTCGCTTTTCGAGGGTTCACCACATCCTCCGTCAGTAATATTGAAGCTGATCTACCACTGGGCCTGCCAAACGAACGTATCCAACGTGGTGAACTGGGTGAAGGTCGATAACATGTACCTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACNCAGGATGGGCAGCAGCGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5377#0 GAATCCCCCGAGGTGTAATAACATGTACTTAAGGGTCTGTACACATTGTTACGGTCCGTT 60 consensus_5377#1 ------------------------------------------------------------ consensus_5377#0 TGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAAATCGATCGAG 120 consensus_5377#1 ---------------------CCGAAAACGACGCCCGTGCCCGCGAAAAAAACGAGAGAA 39 * * * * * ** * ****** *** ** consensus_5377#0 ATCGGAGTAATTTCATTGGGAACAACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTA 180 consensus_5377#1 GAAAAGGTCAAAACTCCGGATCCGA--AGATCAAATCGCCGAAAACCCCTGGTTTAACAC 97 ** * * ** * * * ** * * * * * *** ** consensus_5377#0 GAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCG-CGCCGTGGAGCC 239 consensus_5377#1 CAAAGGTCGC---CGCTATTTCTG-----TACGACCCACCGAATTCAACTCCATCGGAGG 149 * ** * **** ** * ** * * ** *** * ** * * consensus_5377#0 CTTGCTGGACGCCGAAAAAAGCTACAAGAAGAGGTTT-TCAAAAATTTTGGAACCACTTA 298 consensus_5377#1 GTTGCAAGTCGGCGCGGAAAAGGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCG-TGG 208 **** * ** ** *** **** *** * * * * * ** * consensus_5377#0 GCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGC 358 consensus_5377#1 TCGATCTTACGAAAGATGATTCGGGCAAACCGAC-GGCCGATTCGCGAGAAATATCTTTC 267 **** * * *** * ** * *** * ** ** * ** * consensus_5377#0 TGAACAGCATGGGATACAAAAC-CGTTATACAGGTTCCCGGTTCTGAACAGACGCTCAAG 417 consensus_5377#1 AGCAAGATTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGC 327 * * ** ** ** * * ** ** * ** * ** * consensus_5377#0 AACAGTAACGCAAATATAATGGACTATTTGCGGCGCATCGTG----CCACGCATGTTCCA 473 consensus_5377#1 GTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTC 387 * ** * *** *** * * ** * * **** * consensus_5377#0 AAACACCTTGTCCCTTCTATCTCG--ACAAATCATCCAACAGTTCTTGAATGAGCTGGTG 531 consensus_5377#1 GTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAA 447 **** ** ** * ** * * ** ** *** ** * ** ** consensus_5377#0 TG---GCGTGAGCTGTATGGCAACAGCCCC----GGCACAACATTCGAT--AACATAGTA 582 consensus_5377#1 CAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGC 507 * ** * * ** * *** ** ** *** * *** consensus_5377#0 AAACACTTAT-CTGAGGAAGCGAAAATTGAAACAAAGGAAAGTTTGACTACTCGCCTTCA 641 consensus_5377#1 AAATTCCCGTACTCGGGTGGCTACTTTTGGATCA--GTGATTGTTGTCCGACTAGGTTCA 565 *** * * ** ** ** * *** * ** * * *** * **** consensus_5377#0 TAAGGCCGCCGCAGATCCCTTCAAGCAGTGGGAAATTGTATCCGATATGCCAGCGTTGGG 701 consensus_5377#1 CGTCTGTGTTCCATGGTTCGCTATTCGAGGGTTCACCACATCC--TCCGTCAGTAATATT 623 * ** * * * ** * **** * * *** * consensus_5377#0 CAAAGTTCCTGGTAAACGAGGCCGAAAACCCAAGG-ATCAATCGTTGTAGAGTT--TGAA 758 consensus_5377#1 GAAGCTGATCTACCACTGGGCCTGCCAAACGAACGTATCCAACGTGGTGAACTGGGTGAA 683 ** * * * * * * ** * ** * *** * *** ** * * **** consensus_5377#0 GAGAGGTAG-AGGGAC---AAATTTTTGTACGCCATTTTTCAAACCCGCGCGCTCGCCCG 814 consensus_5377#1 GGTCGATAACATGTACCTTAAGGGTCTGTACAC-ATTGTTACGGTCCGTTTGCACATTGG 742 * * ** * * ** ** * ***** * *** ** *** ** * * consensus_5377#0 CCTTTCTCTTCTAGATATGCTAGTTTTAGTTCGTAACGAAGTAATTGAATTACCACGTAA 874 consensus_5377#1 CATTAT--GTAGACATATGAAGCTTCTCGGCGGTCCCAAA--AATCGATCGAGATCGGAG 798 * ** * * ***** ** * * ** * ** *** ** * ** * consensus_5377#0 TG-TTATGTTCTGCAGAACCAACCATAGGAGT----------- 905 consensus_5377#1 TAATTTCATTGGGAACAACTACNCAGGATGGGCAGCAGCGTCA 841 * ** ** * * *** * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||