cluster # 5379

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Anopheles gambiae
cluster # 5379 cluster # 5379 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5379#0 length = 732 sequences # 1

consensus_5379#1 length = 705 sequences # 3

consensusID : consensus_5379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [GAATNGCCCGAGGNTTATTGTACAGAGCACCGGCATGACGACGATGGACACGCAGGGCATGGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGACCCCGAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAAACGGGAGGAAACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCCTAATGCGGACGCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATGATGATCGCGGCCNCGACGGTGGA]

[+] EMBL AL932343             [GAATNGCCCGAGGNTTATTGTACAGAGCACCGGCATGACGACGATGGACACGCAGGGCATGGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGACCCCGAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAAACGGGAGGAAACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCCTAATGCGGACGCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATGATGATCGCGGCCNCGACGGTGGA]




>consensus_5379#0
GAATNGCCCGAGGNTTATTGTACAGAGCACCGGCATGACGACGATGGACACGCAGGGCAT
GGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCT
GGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGC
CGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGA
GCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTA
CGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGA
GCAGGGCGATCTGCGGACGAGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGT
CGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAA
TATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGACCCC
GAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAAACGGGAGGAA
ACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCCTAATGCGGAC
GCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATGATGATCGCGGC
CNCGACGGTGGA

consensusID : consensus_5379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 705
fasta sequence

                              [CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCG-ATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTAC-GGACCCCGAATTGATACAACCTACAGCG-GGAGTGGATGGAGCGGCGACGATCGAAACGGAGG-AAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAAGCGTGGCACACTTCCTCCTAATGCGGACGAAATGCATCCATCGAT]

[+] EMBL BM608087             [CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCG ATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTAC GGACCCCGAATTGATACAACCTACAGCG GGAGTGGATGGAGCGGCGACGATCGAAACGGAGG AAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAAGCGTGGCACACTTCCTCCTAATGCGGACGAAATGCATCCATCGAT]
[+] EMBL BM611194             [                         ccgGTTCAGAGCACCGGCATGGCGACGATGGATACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCGAATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGGACCCCGAATTGATACAACCTACAGCGTGGAGTGGATGGAGCGGCGACGATCGAAACGGAGGAAAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCC                                                   ]
[+] EMBL BM597547             [                               ccGAGCGCCGGCATGACGACGATGGACACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTAGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTGTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCG ATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTAC GGACCCCGAATTGATACAACCTACAGCG GGAGTGGATGGAGCGGCGACGATCGAAACGGAGG AAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAAGCGTAGCACACTTCCTCCTAATGCGGAC                 ]




>consensus_5379#1
CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATAC
GCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGG
CAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCA
CAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAA
TGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCT
TGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTC
GAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCA
CGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAA
ACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCC
TACGGACCCCGAATTGATACAACCTACAGCGGGAGTGGATGGAGCGGCGACGATCGAAAC
GGAGGAAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAA
GCGTGGCACACTTCCTCCTAATGCGGACGAAATGCATCCATCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5379#0      ------GAATNGC-CCGAGGNT--TATTGTACAGAGCACCGGCATGACGACGATGGACAC 51
consensus_5379#1      CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATAC 60
                             *** *    **   *  ****** *************** ********** **

consensus_5379#0      GCAGGGCATGGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGG 111
consensus_5379#1      GCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGG 120
                      ******************** ***************************************

consensus_5379#0      CAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCA 171
consensus_5379#1      CAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCA 180
                      ************************************************************

consensus_5379#0      CAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAA 231
consensus_5379#1      CAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAA 240
                      ************************************************ ***********

consensus_5379#0      TGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCT 291
consensus_5379#1      TGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCT 300
                      ************************************************************

consensus_5379#0      TGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTC 351
consensus_5379#1      TGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTC 360
                      ************************************************************

consensus_5379#0      GAACGTTGAGCAGGGCGATCTGCGGACGAG-CTGGACGAACTGTACTGGGACACGCTGCA 410
consensus_5379#1      GAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCA 420
                      ****************************** *****************************

consensus_5379#0      CGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAA 470
consensus_5379#1      CGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAA 480
                      ************************************************************

consensus_5379#0      ACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCC 530
consensus_5379#1      ACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCC 540
                      ********** *********** *************************************

consensus_5379#0      TACGGACCCCGAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAA 590
consensus_5379#1      TACGGACCCCGAATTGATACAACC-TACAGCGGGAGTGG-ATGGAGCGGCGACGATCGAA 598
                      ************************ ************** ************ *******

consensus_5379#0      ACGGGAGGAAACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCC 650
consensus_5379#1      ACGG-AGGAAACTGGATCGGTATGTAGCGAAAA-GCCCTCGGTATGTAGCGAAAAGCCCA 656
                      **** **************************** ****       ***** *    * * 

consensus_5379#0      TAATGCG-GACGCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATG 709
consensus_5379#1      TAAAGCGTGGCACACTTCCTCCTAATGCGGAC-GAAATGCATCCATCGAT---------- 705
                      *** *** * * **  * *  * *  **  ** *  * ****    *             

consensus_5379#0      ATGATCGCGGCCNCGACGGTGGA 732
consensus_5379#1      -----------------------